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Two mutations in the truncated Rep gene RBR domain delayed the Wheat dwarf virus infection in transgenic barley plants

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Journal of Integrative Agriculture 2018年第11期17卷 2492-2500页

作者： Pavel Cejnar Ludmila Ohnoutkova Jan Ripl Tomas Vlcko Jiban Kumar Kundu Division of Crop Protection and Plant Health Crop Research Institute Prague 16106 Czech Republic Department of Chemical Biology and Genetics Centre of the Region Hana for Biotechnological and Agricultural Research Palack~/ University Olomouc 78371 Czech Republic

Wheat dwarf virus （WDV）, an important cereal pathogen, is closely related to Maize streak virus （MSV）, a model virus of the Mastrevirus genus. Based on its similarity to known MSV resistance strategies, a truncated part of the WDV replication- associated （RepA） gene （WDVRepA215） and the WDV RepA gene with a mutated retinoblastoma-related protein （RBR） interaction domain （WDVRepA215RBRre^t） were cloned into the plPKb002 expression vector and transformed into immature embryos of spring barley cv. Golden Promise plants through Agrobacterium-mediated transformation. A detailed study of T1-generation plants infected by leafhoppers （Psammotettix alienus） fed on infection sources of variable strength was performed over a 5-week period encompassing the initial stages of virus infection. A DNA WDV TaqMan qPCR assay normalized using the DNA puroindoline-b SYBR Green qPCR assay for samples on a per week basis revealed an approximately 2-week delay in WDVRepA215RBR^mut plants to WDVRepA215 plants before significant increases in the WDV viral levels occurred. Both WDVRepA215 and WDVRepA215RBR^mut plants showed similar levels of transgenic transcripts over the screened period; however, the transgenic plants also showed increased numbers of infected plants compared to the control plants.

关键词： Wheat dwarf virus (WDV) truncated Rep gene RBR domain qPCR screening

High-resolution genome-wide association study of a large Czech collection of sweet cherry (Prunus avium L.) on fruit maturity and quality traits

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Horticulture Research 2023年第1期10卷 113-127页

作者： Kateřina Holušová JanaČmejlová Pavol Suran RadekČmejla JiříSedlák Lubor Zelený Jan Bartoš centre of the Region Hanáfor biotechnological and Agricultural Research Institute of Experimental Botany of the Czech Academy of Sciencesšlechtitelu 31Olomouc77900Czech Republic Research and Breeding Institute of Pomology Holovousy Ltd. Holovousy 129Holovousy50801Czech Republic

In sweet cherry(Prunus avium L.),quantitative trait loci have been identified for fruit maturity,colour,firmness,and size to develop markers for marker-assisted ***,resolution is usually too low in those analyses to directly target candidate genes,and some associations are *** contrast,genome-wide association studies are performed on broad collections of accessions,and assemblies of reference sequences from Tieton and Satonishiki cultivars enable identification of single nucleotide polymorphisms after whole-genome sequencing,providing high marker *** hundred and thirty-five sweet cherry accessions were sequenced and phenotyped for harvest time and fruit colour,firmness,and ***-wide association studies were used to identify single nucleotide polymorphisms associated with each trait,which were verified in breeding material consisting of 64 additional accessions.A total of 1767106 single nucleotide polymorphisms were *** that density,significant single nucleotide polymorphisms could be linked to co-inherited haplotype blocks(median size∼10 kb).Thus,markers were tightly associated with respective phenotypes,and individual allelic combinations of particular single nucleotide polymorphisms provided links to distinct *** addition,yellow-fruit accessions were sequenced,and a∼90-kb-deletion on chromosome 3 that included five MYB10 transcription factors was associated with the ***,the study confirmed numerous quantitative trait loci from bi-parental populations using high-diversity accession populations,identified novel associations,and genome-wide association studies reduced the size of trait-associated loci from megabases to kilobases and to a few candidate genes per ***,a framework is provided to develop molecular markers and evaluate and characterize genes underlying important agronomic traits.

关键词： fir breeding maturity

Structure and Activity of Strigolactones： New Plant Hormones with a Rich Future

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Molecular Plant 2013年第1期6卷 38-62页

作者： Binne Zwanenburg Tomás Pospísil Radboud University Nijmegen Institute for Molecules and Materials Cluster of Organic Chemistry Heyendaalseweg 135 6525AJ Nijmegen TheNetherlands Palacky University Faculty of Science Centre of the Region Haná for Biotechnological and Agricultural Research Department of Growth Regulators~lechtiteICJ 11 CZ-783 71 Olomouc Czech Republic

Strigolactones （SLs） constitute a new class of plant hormones which are active as germination stimulants for seeds of parasitic weeds of Striga, Orobanche, and Pelipanchi spp, in hyphal branching of arbuscular mycorrhizal （AM） fungi and as inhibitors of shoot branching. In this review, the focus is on molecular features of these SLs. The occurrence of SLs in root exudates of host plants is described. The naming protocol for SL according to the International Union of Pure and Applied Chemistry （IUPAC） rules and the ＇at a glance＇ method is explained. The total synthesis of some natural SLs is described with details for all eight stereoisomers of strigol. The problems encountered with assign- ing the correct structure of natural SLs are analyzed for orobanchol, alectrol, and solanacol. The structure-activity relationship of SLs as germination stimulants leads to the identification of the bioactiphore of SLs. Together with a tentative mechanism for the mode of action, a model has been derived that can be used to design and prepare active SL analogs. This working model has been used for the preparation of a series of new SL analogs such as Nijmegen-1, and analogs derived from simple ketones, keto enols, and saccharine. The serendipitous finding of SL mimics which are derived from the D-ring in SLs （appropriately substituted butenolides） is reported. For SL mimics, a mode of action is proposed as well. Recent new results support this proposal. The stability of SLs and SL analogs towards hydrolysis is described and some details of the mechanism of hydrolysis are discussed as well. The attempted isolation of the protein receptor for germination and the current status concerning the biosynthesis of natural SLs are briefly discussed. Some non-SLs as germinating agents are mentioned. The structure-activity relationship for SLs in hyphal branching of AM fungi and in repression of shoot branching is also analyzed. For each of the principle functions, a working model for the desi

关键词： germination stimulant hyphal branching AM fungi inhibition shoot branching plant hormones strigolac-tones structure-activity relationship.

Development of oligonucleotide probes for FISH karyotyping in Haynaldia villosa,a wild relative of common wheat

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The Crop Journal 2020年第4期8卷 676-681页

作者： Jia Lei Jiawen Zhou Haojie Sun Wentao Wan Jin Xiao Chunxia Yuan Miroslava Karafiátová Jaroslav Dolezel Haiyan Wang Xiue Wang State Key Laboratory of Crop Genetics and Germplasm Enhancement Cytogenetics InstituteNanjing Agricultural University/JCIC-MCPNanjing 210095JiangsuChina Institute of Experimental Botany Czech Academy of SciencesCentre of the Region Hana for Biotechnological and Agricultural ResearchŠlechtitelů3177900 OlomoucCzech Republic

Haynaldia villosa is a wild relative of wheat and a valuable gene resource for wheat *** to the limited number of probes available for fluorescence in situ hybridization(FISH),the resolution at which the karyotype of *** can be characterized is poor,hampering accurate characterization of small segmental alien *** designed ten oligonucleotide probes using tandem repeats in DNA sequences derived from the short arm of *** chromosome 6 V(6 VS).FISH with seven of them resulted in clear signals on *** *** these,we constructed FISH karyotypes for *** using oligo-6 VS-1 and oligo-6 VS-35 oligonucleotides and characterized the distribution of the two probes in five different *** *** new FISH probes can efficiently characterize *** introgressions into wheat.

关键词： Chromosome identification Haynaldia villosa Oligonucleotide probes Tandem DNA repeats

Endogenous Hypoxia in Lateral Root Primordia Controls Root Architecture by Antagonizing Auxin Signaling in Arabidopsis

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Molecular Plant 2019年第4期12卷 538-551页

作者： Vinay Shukla Lara Lombardi Sergio lacopino Ales Pencik Ondrej Novak Pierdomenico Perata Beatrice Giuntoli Francesco Licausi Unstitute of Life Sciences Scuola Superiore Sant'Anna Pisa Italy Biology Department University of Pisa Pisa Italy Laboratory of Growth Regulators Centre of the Region Hana for Biotechnological and Agricultural Research Institute of Experimental Botany CAS & Faculty of Science. Palacky University Slechtitelu 27 78371 Olomouc Czech Republic

As non-photosynthesizing organs, roots are dependent on diffusion of oxygen from the external environment and, in some in stances, from the shoot for their aerobic metabolism . Establishment of hypoxic niches in the developing tissues of plants has been postulated as a consequence of insufficient diffusion of oxygen to satisfy the demands throughout development. Here, we report that such niches are established at specific stages of lateral root primordia development in Arabidopsis thaliana grown under aerobic conditions. Using gain- and loss-of-function mutants, we show that ERF-Ⅶ transcription factors, which mediate hypoxic responses, control root architecture by acting in cells with a high level of auxin signaling. ERF-Ⅶs repress the expression of the auxin-induced genes LBD16, LBD18, and PUCHI, which are essential for lateral root development, by binding to their promoters. Our results support a model in which the establishment of hypoxic n iches in the developing lateral root primordia con tributes to the shutting down of key auxin-induced genes and regulates the production of lateral roots.

关键词： Arabidopsis auxin ERF-VII, hypoxia lateral root root development

Neurodegenerative diseases as proteinopathies-driven immune disorders

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Neural Regeneration Research 2020年第5期15卷 850-856页

作者： Fausta Ciccocioppo Giuseppina Bologna Eva Ercolino Laura Pierdomenico Pasquale Simeone Paola Lanuti Damiana Pieragostino Piero Del Boccio Marco Marchisio Sebastiano Miscia Department of Medicine and Aging Science University “G. d’Annunzio” of Chieti-PescaraChietiItaly centre on Aging Sciences and Translational Medicine (Ce.S.I-MeT) University “G. d’Annunzio” of Chieti-PescaraChietiItaly Department of Medical Oral and Biotechnological SciencesUniversity “G. d’Annunzio” of Chieti-PescaraChietiItaly

In the pathophysiology of neurodegenerative disorders,the role of misfolded protein deposition leading to neurodegeneration has been primarily *** the last decade,however,it has been proposed a parallel involvement of innate immune activation,chronic inflammation and adaptive immunity in the neurodegeneration mechanisms triggered by *** insights in the neurodegenerative field strongly suggest a role for the immune system in the pathophysiology of neurodegenerative ***,the hypothesis underlining the modulation of the innate and the adaptive immune system in the events linked to brain deposition of misfolded proteins could open new perspectives in the setting of specific immunotherapeutic strategies for the treatment of neurodegenerative ***,we have reviewed the pathogenic hypothesis in neurodegenerative pathologies,underling the links between the deposition of misfolded protein mechanisms and the immune activation.

关键词： adaptive immunity choroid plexus immunotherapy innate immunity neurodegenerative diseases neuroinflammation proteinopathies

Ash-and-Slag Wastes of Energy Sector as Raw Material for Production of Rare-Earth Metals and Alumina

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Journal of Environmental Science and Engineering(A) 2012年第5期1卷 704-713页

作者： Irina Blayda Larisa Slysarenko Tatiana Vasyleva Zinesh Abisheva biotechnological centre I.L Mechnikov Odessa National University Odessa 65082 Ukraine Center of Earth Sciences Metallurgy and Beneficiation Almaty 050010 Kazakhstan

The results to develop a complex technology of co-extraction of germanium and gallium from the ash-and-slag wastes of coal combustion in Ukraine were presented. Based on the study of phase changes occurring in initial raw materials as a result of its processing, it was proposed to carry out a preliminary enrichment of the raw materials in order to produce secondary sublimates. Their further processing involves a combination of leaching soluble material with distillation of germanium in the form of tetrachloride. The resulting acidic solutions are trended to the gallium extraction. Optimum conditions of carrying out of processes are *** chemical and phase composition of the resulting dump products and solutions have been defined. On the basis of it ways of their processing for the purpose of reception of alumina and building materials are recommended.

关键词： Gallium germanium alumina fly ash leaching restorative burning.

YODA-HSP90 Module Regulates Phosphorylation-Dependent Inactivation of SPEECHLESS to Control Stomatal Development under Acute Heat Stress in Arabidopsis

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Molecular Plant 2020年第4期13卷 612-633页

作者： Despina Samakovli Tereza Ticha Tereza Vavrdova Miroslav Ovecka Ivan Luptovciak Veronika Zapletalova Anna Kucharova Pavel Krenek Yuliya Krasylenko Theoni Margaritopoulou Loukia Roka Dimitra Milioni George Komis Polydefkis Hatzopoulos Jozef Samaj centre of the Region Hana for biotechnological and Agricultural Research Faculty of SciencePalacky University OlomoucSlechtitelu 27Olomouc 78371Czech Republic Molecular Biology Laboratory Agricultural University of Athenslera Odos 75Athens 11855Greece Present address:Laboratory of Mycology Department of PhytopathologyBenaki Phytopathological Institute8st.Delta str.GR-14561 KifissiaAtticaGreece

Stomatal ontogenesis,patterning,and function are hallmarks of environmental plant adaptation,especially to conditions limiting plant growth,such as elevated temperatures and reduced water *** specification and distribution of a stomatal cell lineage and its terminal differentiation into guard cells require a master regulatory protein phosphorylation cascade involving the YODA mitogen-activated protein kinase kinase *** signaling results in the activation of MITOGEN-ACTIVATED PROTEIN KINASEs(MPK3 and MPK6),which regulate transcription factors,including SPEECHLESS(SPCH).Here,we report that acute heat stress affects the phosphorylation and deactivation of SPCH and modulates stomatal *** using complem entary molecular,genetic,biochemical,and cell biology approaches,we provide solid evidence that HEAT SHOCK PROTEINS 90(HSP90s)play a crucial role in transducing heat-stress response through the YODA *** studies revealed that YODA and HSP90.1 are epistatic,and they likely function linearly in the same developmental pathway regulating stomata ***90s interact with YODA,affectits cellular polarization,and modulate the phosphorylation of downstream targets,such as MPK6 and SPCH,under both normal and heat-stress ***,HSP90-mediated specification and differentiation of the stomatal cell lineage couples stomatal development to environmental cues,providing an adaptive heat stress response mechanism in plants.

关键词： stomata HSP90 MAPK heat stress Arabidopsis

Genome-wide identification and expression analysis of NtbHLH gene family in tobacco(Nicotiana tabacum)and the role of NtbHLH86 in drought adaptation

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Plant Diversity 2021年第6期43卷 510-522页

作者： Ge Bai Da-Hai Yang Peijian Chao Heng Yao MingLiang Fei Yihan Zhang Xuejun Chen Bingguang Xiao Feng Li Zhen-Yu Wang Jun Yang He Xie Tobacco Breeding and Biotechnology Research Center Yunnan Academy of Tobacco Agricultural SciencesKunmingYunnanChina Key Laboratory of Tobacco biotechnological Breeding KunmingYunnanChina National Tobacco Genetic Engineering Research Center KunmingYunnanChina National Tobacco Gene Research centre Zhengzhou Tobacco Research InstituteZhengzhouHenanChina Institute ofBioengineering Guangdong Academy of SciencesGuangzhouGuangdong510316China

The bHLH transcription factors play pivotal roles in plant growth and development,production of secondary metabolites and responses to various environmental *** the bHLH genes have been well studied in model plant species,a comprehensive investigation of the bHLH genes is required for tobacco with newly obtained high-quality *** the present study,a total of 309 NtbHLH genes were identified and can be divided into 23 *** conserved amino acids which are essential for their function were predicted for the NtbHLH ***,the NtbHLH genes were conserved during evolution through analyzing the gene structures and conserved motifs.A total of 265 NtbHLH genes were localized in the 24 tobacco chromosomes while the remained 44 NtbHLH genes were mapped to the scaffolds due to the complexity of tobacco ***,transcripts of NtbHLH genes were obviously tissue-specific expressed from the gene-chip data from 23 tobacco tissues,and expressions of 20 random selected NtbHLH genes were further confirmed by quantitative real-time PCR,indicating their potential functions in the plant growth and ***,overexpressed NtbHLH86 gene confers improve drought tolerance in tobacco indicating that it might be involved in the regulation of drought ***,our findings here provide a valuable information on the characterization of NtbHLH genes and further investigation of their functions in tobacco.

关键词： bHLH gene family Development Genome-wide analysis Characterization