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The multi-kingdom microbiome catalog of the chicken gastrointestinal tract

Biosafety and Health 2024年第2期6卷 101-115页

作者： Yanan Wang Mengqi Qu Yuhai Bi william j.liu Sufang Ma Bo Wan Yongfei Hu Baoli Zhu Gaiping Zhang George F.Gao International joint Research Center of National Animal Immunology College of Veterinary MedicineHenan Agricultural UniversityZhengzhou 450046China CAS Key Laboratory of Pathogen Microbiology and Immunology Institute of MicrobiologyChinese Academy of Sciences(CAS)Beijing 100101China Longhu Laboratory Zhengzhou 450046China University of Chinese Academy of Sciences Beijing 100049China NHC Key Laboratory of Biosafety National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijing 102206China State Key Laboratory of Animal Nutrition and Feeding College of Animal Science and TechnologyChina Agricultural UniversityBeijing 100193China

Chicken is an important food animal worldwide and plays an important role in human life by providing meat and *** recent significant advances in gut microbiome studies,a comprehensive study of chicken gut bacterial,archaeal,and viral genomes remains *** this study,we constructed a chicken multi-kingdom microbiome catalog(CMKMC),including 18,201 bacterial,225 archaeal,and 33,411 viral genomes,and annotated over 6,076,006 protein-coding genes by integrating 135 chicken gut metagenomes and publicly available metagenome-assembled genomes(MAGs)from ten *** found that 812 and 240 MAGs in our dataset were putative novel species and genera,respectively,far beyond what was previously *** newly unclassified MAGs were predominant in Phyla Firmicutes_A(n=263),followed by Firmicutes(n=126),Bacteroidota(n=121),and Proteobacteria(n=87).Most of the classified species-level viral oper-ational taxonomic units belong to ***,63.24%of chicken gut viromes are predicted to infect two or more hosts,including complete circular ***,we found that diverse auxiliary metabolic genes and antibiotic resistance genes were carried by ***,our CMKMC provides the largest integrated MAGs and viral genomes from the chicken gut to date,functional insights into the chicken gastrointestinal tract microbiota,and paves the way for microbial interventions for better chicken health and productivity.

关键词： Chicken Microbiome Metagenome assembled genomes Archaeome Virome Antibiotic resistance gene

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A Tale of Two Cities:From Influenza HxNy to SARS-CoV-z

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China CDC weekly 2021年第49期3卷 1052-1056页

作者： william j.liu Shelan liu Chinese National Influenza Center(CNIC) National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijingChina Department of Infectious Diseases Zhejiang Provincial Center for Disease Control and PreventionHangzhouZhejiangChina Key Laboratory of Vaccine Prevention and Control of Infectious Disease of Zhejiang ProvinceHangzhouZhejiangChina.

THE COMMON FEATURES OF VIRUSES WITH PANDEMIC POTENTIAL In the past hundred years,human population expansion and globalization have changed the pattern of human-nature interactions and accelerated the emergence and spread of novel infectious diseases(1).Humans have experienced a long list of microbial threats to health,of which,70%are believed to be from animal reservoirs(2),such as severe acute respiratory syndrome coronavirus(SARS-CoV).

关键词： acute diseases respiratory

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It’s not just science: challenges for public health intervention in Ebola epidemics in the Democratic Republic of Congo

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Science China(Life Sciences) 2020年第7期63卷 1079-1081页

作者： Pengyan Wang william j.liu School of Laboratory Medicine and Life Sciences Wenzhou Medical UniversityWenzhou 325035China NHC Key Laboratory of Biosafety National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijing 102206China

The Democratic Republic of Congo (DRC) is suffering from the world’s second largest and most prolonged Ebola virus disease (EVD) epidemic on record (Figure 1). The current prevalence of EVD in the DRC makes this the 10th (and largest) EVD epidemic in the DRC since the first discovery of the Zaire Ebola virus in 1976 (Ilunga Kalenga, 2019).Globally, it is the second worst outbreak in the history of Ebola epidemics.

关键词： It’s not just science challenges for public health intervention in Ebola epidemics in the Democratic Republic of Congo

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The triphibious warfare against viruses

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Science China(Life Sciences) 2017年第12期60卷 1295-1298页

作者： william j.liu Di liu Key Laboratory of Medical Virology and Viral Diseases Ministry of Health of People's Republic of China National Institute for Viral Disease Control and Prevention Chinese Center for Disease Control and Prevention CAS Key Laboratory for Pathogenic Microbiology and Immunology Institute of Microbiology Chinese Academy of Sciences Computational Virology Group CAS Key Laboratory of Special Pathogens and Biosafety Wuhan Institute of Virology Chinese Academy of Sciences

Despite the long journey undertaken by mankind to confront the diseases caused by viruses,people were unaware of the existence of viruses until the closing years of the 19th century,when the Russian biologist Dmitri Ivanovsky demonstrated that tobacco plants could be infected by a toxin smaller than bacteria,followed by which the Dutch microbiologist Martinus Beijerinck termed the toxin as a contagium vivum fluidum （soluble living germ） and re-introduced the word ＂virus＂（derived from the Latin word ＂virus＂ meaning poison; the modern meaning is an ＂agent that causes infectious disease＂ that was first recorded in 1728）.

关键词： The triphibious warfare viruses

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Human T-cell immunity against the emerging and re-emerging viruses

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Science China(Life Sciences) 2017年第12期60卷 1307-1316页

作者： Min Zhao Hangjie Zhang Kefang liu George F.Gao william j.liu Research Network of lmmunity and Health(RN1H) Beijing Institutes of Life ScienceChinese Academy of SciencesBeijing 100101China Key Laboratory of Medical Virology and Viral Diseases Ministry of Health of People's Republic of ChinaNational Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijing 102206China CAS Key Laboratory of Pathogenic Microbiology and Immunology Institute of MicrobiologyChinese Academy of SciencesBeijing 100101China

Over the past decade, we have seen an alarming number of high-profile outbreaks of newly emerging and re-emerging *** outbreaks of avian influenza viruses, Middle East respiratory syndrome coronaviruses, Zika virus and Ebola virus present great threats to global health. Considering the pivotal role of host T-cell immunity in the alleviation of symptoms and the clearance of viruses in patients, there are three issues to be primarily concerned about T-cell immunity when a new virus emerges: first, does the population possess pre-existing T-cells against the new virus through previous infections of genetically relevant viruses; second, does a proper immune response arise in the patients to provide protection through an immunopathogenic effect; lastly, how long can the virus-specific immune memory persist. Herein, we summarize the current updates on the characteristics of human T-cell immunological responses against recently emerged or re-emerged viruses, and emphasize the necessity for timely investigation on the T-cell features of these viral diseases, which may provide beneficial recommendations for clinical diagnosis and vaccine development.

关键词： emerging viruses avian influenza H7N9 MERS-CoV Zika Ebola human immunity T-cell cross-reactivity

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On the Centenary of the Spanish Flu: Being Prepared for the Next Pandemic

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Virologica Sinica 2018年第6期33卷 463-466页

作者： william j.liu Yuhai Bi Dayan Wang George F.Gao Chinese National Influenza Center (CNIC) National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and Prevention (China CDC)Beijing 102206China CAS Key Laboratory of Pathogenic Microbiology and Immunology Institute of MicrobiologyCenter for Influenza Research and Early-Warning (CASCIRE)Chinese Academy of SciencesBeijing 100101China

Influenza is one of the oldest infectious diseases affecting humans. Every influenza pandemic in history has ended with disastrous outcomes regarding public health and the social economy. This year marks the 100th anniversary of the Spanish flu (H1N1) outbreak of 1918, which is recognized as the most lethal natural event in recent history.

关键词： Being Prepared for the Next Pandemic On the Centenary of the Spanish Flu

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China in action: national strategies to combat against emerging infectious diseases

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Science China(Life Sciences) 2017年第12期60卷 1383-1385页

作者： Min Han jinhui Gu George F.Gao william j.liu CAS Key Laboratory of Pathogenic Microbiology and Immunology Institute of Microbiology Chinese Academy of Sciences Division of Major Special Projects Department of Health Science Technology and Education at China's National Health and Family Planning Commission National Institute for Viral Disease Control and Prevention Chinese Center for Disease Control and Prevention

During the 2013–2016 Ebola epidemic in West Africa,there was a special team as part of an international effort working in *** was the Chinese aid team deployed to West Africa as a multidisciplinary group composed of ... 详细信息

关键词： China in action national strategies combat against emerging infectious diseases

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Let’s Get Vaccinated for Both Flu and COVID-19:On the World Flu Day 2021

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China CDC weekly 2021年第44期3卷 915-917页

作者： George F.Gao william j.liu Chinese Center for Disease Control and Prevention BeijingChina.

This year marks the fourth World Flu Day on November *** 2018,on the occasion of centenary of the 1918 flu pandemic,the first World Flu Day was formally initiated and developed by leading influenza specialists in China and all over the world at a symposium in Shenzhen,China,with the theme to“Commemorate the Centenary of the 1918–19 Influenza Pandemic”(1).Scientists and representatives from different international associations and organizations.

关键词： formally initiated World

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Powassan virus:A tick borne flavivirus infecting humans

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Biosafety and Health 2022年第1期4卷 30-37页

作者： Xu Yang George F.Gao william j.liu CAS Key Laboratory of Pathogen Microbiology and Immunology Institute of MicrobiologyChinese Academy of Sciences(CAS)Beijing 100101China State Key Laboratory of Natural and Biomimetic Drugs Department of Chemical BiologySchool of Pharmaceutical SciencesPeking UniversityBeijing 100191China NHC Key Laboratory of Biosafety National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and Prevention(China CDC)Beijing 102206China

Infection of humans by Powassan virus(POWV)occurs rarely but is potentially life‐*** isolated in Ontario,Canada in 1958,the presence of POWV has been confirmed in three countries:Canada,the USA,and *** a limited number of human cases has been reported thus far,the infection rate has shown signs of increasing during the 21^(st) ***,POWV and a genetically close variant,deer tick virus(DTV),are the only member of the tick‐borne flaviviruses known to be endemic in North America and maintain in respective tick‐host *** this review,we briefly summarize current knowledge involving the epidemiology and etiology,pathogenesis and immunity,molecular evolution,and protein functions of POWV,aiming to increase our understanding of the virus and unlock the potential to control this lethal *** data may also provide tools to minimize the future threat of other emerging and re‐emerging viruses.

关键词： Powassan virus(POWV) Deer tick virus(DTV) Tick‐borne flavivirus(TBFV) Tick Zoonotic disease Encephalitis

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Avian influenza A(H7N9)virus:from low pathogenic to highly pathogenic

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Frontiers of Medicine 2021年第4期15卷 507-527页

作者： william j.liu Haixia Xiao Lianpan Dai Di liu jianjun Chen Xiaopeng Qi Yuhai Bi Yi Shi George F.Gao Yingxia liu Shenzhen Key Laboratory of Pathogen and Immunity Shenzhen Third People’s HospitalShenzhen518114China National Institute for Viral Disease Control and Prevention Chinese Center for Disease Control and PreventionBeijing102206China Laboratory of Protein Engineering and Vaccines Tianjin Institute of Industrial BiotechnologyChinese Academy of Sciences(CAS)Tianjin300308China CAS Key Laboratory of Pathogenic Microbiology and Immunology Institute of MicrobiologyChinese Academy of SciencesBeijing100101China CAS Key Laboratory of Special Pathogens and Biosafety Chinese Academy of SciencesWuhan430071China National Virus Resource Center Chinese Academy of SciencesWuhan430071China University of Chinese Academy Sciences Beijing100049China Center for Influenza Research and Early Warning Chinese Academy of SciencesBeijing100101China Chinese Center for Disease Control and Prevention Beijing102206China

OriginalTranslation The avian influenza A(H7N9)virus is a zoonotic virus that is closely associated with live poultry *** has caused infections in humans in China since *** waves of the H7N9 influenza epidemic occurred in China between March 2013 and September 2017.H7N9 with low-pathogenicity dominated in the first four waves,whereas highly pathogenic H7N9 influenza emerged in poultry and spread to humans during the fifth wave,causing wide *** and officials from China and other countries responded quickly,controlled the epidemic well thus far,and characterized the virus by using new technologies and surveillance tools that were made possible by their preparedness ***,we review the characteristics of the H7N9 viruses that were identified while controlling the spread of the *** was summarized and discussed from the perspectives of molecular epidemiology,clinical features,virulence and pathogenesis,receptor binding,T-cell responses,monoclonal antibody development,vaccine development,and disease *** data provide tools for minimizing the future threat of H7N9 and other emerging and re-emerging viruses,such as SARS-CoV-2.

关键词： H7N9 HPAIV clinical features epidemiology hemagglutinin immunity pathogenesis vaccine

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