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The multi-kingdom microbiome catalog of the chicken gastrointestinal tract

The multi-kingdom microbiome catalog of the chicken gastrointestinal tract

作     者:Yanan Wang Mengqi Qu Yuhai Bi William J.Liu Sufang Ma Bo Wan Yongfei Hu Baoli Zhu Gaiping Zhang George F.Gao 

作者机构:International Joint Research Center of National Animal ImmunologyCollege of Veterinary MedicineHenan Agricultural UniversityZhengzhou 450046China CAS Key Laboratory of Pathogen Microbiology and ImmunologyInstitute of MicrobiologyChinese Academy of Sciences(CAS)Beijing 100101China Longhu LaboratoryZhengzhou 450046China University of Chinese Academy of SciencesBeijing 100049China NHC Key Laboratory of BiosafetyNational Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijing 102206China State Key Laboratory of Animal Nutrition and FeedingCollege of Animal Science and TechnologyChina Agricultural UniversityBeijing 100193China 

出 版 物:《Biosafety and Health》 (生物安全与健康(英文))

年 卷 期:2024年第6卷第2期

页      面:101-115页

核心收录:

学科分类:0710[理学-生物学] 1007[医学-药学(可授医学、理学学位)] 100705[医学-微生物与生化药学] 07[理学] 071005[理学-微生物学] 10[医学] 

基  金:supported in part by grants from the National Key Research and Development Program of China(2023YFC2307101,2020YFA0509202) the Young TopNotch Talents Foundation of Henan Agricultural University(30501278) the major Scientific and Technological Project of Henan Province(221100110600) the Major Program of the National Natural Science Foundation of China(81991534) CAS Southeast Asia Biodiversity Research Institute(151C53KYSB20210023) the Self-supporting Program of Guangzhou Laboratory(SRPG22-001) the National Science and Technology Infrastructure of China(National Pathogen Resource Center-NPRC-32) supported by the Youth Innovation Promotion Association of CAS(Y2021034) 

主  题:Chicken Microbiome Metagenome assembled genomes Archaeome Virome Antibiotic resistance gene 

摘      要:Chicken is an important food animal worldwide and plays an important role in human life by providing meat and *** recent significant advances in gut microbiome studies,a comprehensive study of chicken gut bacterial,archaeal,and viral genomes remains *** this study,we constructed a chicken multi-kingdom microbiome catalog(CMKMC),including 18,201 bacterial,225 archaeal,and 33,411 viral genomes,and annotated over 6,076,006 protein-coding genes by integrating 135 chicken gut metagenomes and publicly available metagenome-assembled genomes(MAGs)from ten *** found that 812 and 240 MAGs in our dataset were putative novel species and genera,respectively,far beyond what was previously *** newly unclassified MAGs were predominant in Phyla Firmicutes_A(n=263),followed by Firmicutes(n=126),Bacteroidota(n=121),and Proteobacteria(n=87).Most of the classified species-level viral oper-ational taxonomic units belong to ***,63.24%of chicken gut viromes are predicted to infect two or more hosts,including complete circular ***,we found that diverse auxiliary metabolic genes and antibiotic resistance genes were carried by ***,our CMKMC provides the largest integrated MAGs and viral genomes from the chicken gut to date,functional insights into the chicken gastrointestinal tract microbiota,and paves the way for microbial interventions for better chicken health and productivity.

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