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Proteome-wide alterations in an industrial clavulanic acid producing strain of Streptomyces clavuligerus

Synthetic and Systems Biotechnology 2017年第1期2卷 39-48页

作者： EserÜnsaldı Aslıhan Kurt-Kızıldogan birgit Voigt Dorte Becher Gülay Ozcengiz Department of Biological Sciences Middle East Technical University06800AnkaraTurkey Department of Agricultural Biotechnology Ondokuz Mayıs University55139SamsunTurkey Institute of Microbiology Ernst-Moritz-Arndt-University of GreifswaldD-17487GreifswaldGermany

The usefulness of genetic/metabolic engineering for further improvement of industrial strains is subject of discussion because of the general lack of knowledge on genetic alterations introduced by iterative cycles of random mutagenesis in such *** industrial clavulanic acid(CA)-overproducer Streptomyces clavuligerus DEPA was assessed to understand proteome-wide changes that have occurred in a local industrial CA overproducer developed through succesive mutagenesis *** proteins that could be identified corresponded to 33 distinct ORfs for underrepresented ones and 60 ORfs for overrepresented *** CA biosynthetic enzymes were overrepresented in *** DEPA;carboxyethylarginine synthase(Ceas2),clavaldehyde dehydrogenase(Car)and carboxyethyl-arginine betalactam-synthase(Bls2)whereas the enzymes of two other secondary metabolites were underrepresented along with two important global regulators[two-component system(TCS)response regulator(SCLAV_2102)and TetR-family transcriptional regulator(SCLAV_3146)]that might be related with CA production and/or differentiation.g-butyrolactone biosynthetic protein AvaA2 was 2.6 fold underrepresented in *** *** levels of two glycolytic enzymes,2,3-bisphosphoglycerate-dependent phosphoglycerate mutase and phosophoglycerate kinase were found decreased while those of dihydrolipoyl dehydrogenase(E3)and isocitrate dehydrogenase,with two isoforms were found as significantly increased.A decrease of amino acid metabolism,methionine biosynthesis in particular,as well as S-adenosylmethionine synthetase appeared as one of the prominent mechanisms of success of *** DEPA strain as a prolific producer of *** levels of two enzymes of shikimate pathway that leads to the production of aromatic amino acids and aromatic secondary metabolites were also *** of the overrepresented stress proteins in *** DEPA included polynucleotide phosphorylase/polyadenylase(PNPase),ATP

关键词： Clavulanic acid Streptomyces clavuligerus Industrial strain Proteomics 2DE MALDI-TOf/MS

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Intracellular transport of hepatitis B virus

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World Journal of Gastroenterology 2007年第1期13卷 39-47页

作者： Michael Kann André Schmitz birgit Rabe CNRS-REGER(UMR 5097) Université Bor-deaux 2146 rue Léo SaignatF-33076 Bordeaux CedexFrance Institute of Medical Virology Fran-kfurter Str.107D-35392 GiessenGermany

for genome mulUplication hepadnaviruses use the transcriptional machinery of the cell that is found within the nucleus. Thus the viral genome has to be transported through the cytoplasm and nuclear pore. The intracytosolic translocation is facilitated by the viral capsid that surrounds the genome and that interacts with cellular microtubules. The subsequent passage through the nuclear pore complexes （NPC） is mediated by the nuclear transport receptors importin α andβ. Importin α binds to the C-terminus of the capsid protein that comprises a nuclear localization signal （NLS）. The exposure of the NLS is regulated and depends upon genome maturation and/or phosphorylation of the capsid protein. As for other karyophilic cargos using this pathway importin α interacts with importin β that facilitates docking of the import complex to the NPC and the passage through the pore. Being a unique strategy, the import of the viral capsid is incomplete in that it becomes arrested inside the nuclear basket, which is a cage-like structure on the karyoplasmic face of the NPC. Presumably only this compartment provides the factors that are required for capsid disassembly and genome release that is restricted to those capsids comprising a mature viral DNA genome.

关键词： Hepatitis B virus Capsid Intracellular transport Microtubules Nuclear pore Importin Nuclear localization signal Nuclear basket

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Chinese Characters No Double Dutch

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China Today 2009年第12期58卷 56-57页

作者： birgit fISCHER

SO cute! Your handwriting is the equivalent of babytalk," was the reception I got when I proudly showed my Chinese friends the Chinese characters I had painstakingly brushed. At that time, I had just started life as a... 详细信息

关键词：汉字语言学习教研室中文

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Osteoclast-like giant cell tumors of the pancreas and liver

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World Journal of Gastroenterology 2006年第48期12卷 7878-7883页

作者： Juergen Bauditz birgit Rudolph Wolfram Wermke fourth Department of Medicine Charité University Hospital Berlin Ger-many Institute of Pathology Charité University Hospital Berlin Germany

Osteoclast-like giant cell tumors （OGCT） are rare abdominal tumors, which mainly occur in the pancreas. The neoplasms are composed of two distinct cell populations and frequently show an inhomogenous appearance with cystic structures. However, due to the rarity of these tumors, only very limited clinical data are available. Imaging features and sonographic appearance have hardly been characterized. Here we report on two cases of osteoclast-like giant cell tumors, one located within the pancreas, the other within the liver, in which OGCTs are extremely rare. Both patients were investigated by contrast sonography, which demonstrated a complex, partly cystic and strongly vascularized tumor within the head of the pancreas in the first patient and a large, hypervascularized neoplasm with calcifications within the liver in the second patient. The liver OGCT responded well to a combination of carboplatin, etoposide and paclitaxel. With a combination of surgical resection, radiofrequency ablation and chemotherapy, the patient＇s survival is currently more than 15 too, making him the longest survivor with an OGCT of the liver to date.

关键词： Osteoclast-like giant cell tumor Liver cancer Pancreatic cancer Contrast sonography

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Usability Experiments to Evaluate UML/SysML-Based Model Driven Software Engineering Notations for Logic Control in Manufacturing Automation

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Journal of Software Engineering and Applications 2014年第11期7卷 943-973页

作者： birgit Vogel-Heuser Institute of Automation and Information Systems Technische Universitat München Munich Germany

Many industrial companies and researchers are looking for more efficient model driven engineering approaches (MDE) in software engineering of manufacturing automation systems (MS) especially for logic control programming, but are uncertain about the applicability and effort needed to implement those approaches in comparison to classical Programmable Logic Controller?(PLC) programming with IEC 61131-3. The paper summarizes results of usability experiments evaluating UML and SysML as software engineering notations for a MDE applied in the domain of manufacturing systems. Modeling MS needs to cover the domain specific characteristics,?i.e.?hybrid process, real time requirements and communication requirements. In addition the paper presents factors, constraint and practical experience for the development of further usability experiments. The paper gives examples of notational expressiveness and weaknesses of UML and SysML. The appendix delivers detailed master models, representing the correct best suited model, and evaluation schemes of the experiment, which is helpful if setting up own empirical experiments.

关键词： Manufacturing Automation Software Programming Environment Software Engineering User Interface Human factors

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Specifying the role of BAK1-interacting receptor-like kinase 3 in brassinosteroid signaling

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Journal of Integrative Plant Biology 2020年第4期62卷 456-469页

作者： Ruth Groβeholz Anna feldman-Salit friederike Wanke Sarina Schulze Nina Glockner birgit Kemmerling Klaus Harter Ursula Kummer Centre for Organismal Studies/Bio Quant Heidelberg University69120 HeidelbergGermany Center for Plant Molecular Biology(ZMBP) University Tübingen72076 TubingenGermany

Brassinosteroids(BR) are involved in the control of several developmental processes ranging from root elongation to senescence and adaptation to environmental cues. Thus, BR perception and signaling have to be precisely regulated. One regulator is BRI1-associated kinase 1(BAK1)-interacting receptor-like kinase 3(BIR3). In the absence of BR, BIR3 forms complexes with BR insensitive 1(BRI1) and ***, the biophysical and energetic requirements for complex formation in the absence of the ligand have yet to be determined. Using computational modeling, we simulated the potential complexes between the cytoplasmic domains of BAK1, BRI1 and BIR3. Our calculations and experimental data confirm the interaction of BIR3 Rewith BAK1 and BRI1, with the BAK1 BIR3 interaction clearly favored. furthermore, we demonstrate that BIR3 and BRI1 share the same interaction site with BAK1. This suggests a competition between BIR3 and BRI1 for binding to BAK1, which results in preferential binding of BIR3 to BAK1 in the absence of the ligand thereby preventing the active participation of BAK1 in BR signaling. Our model also suggests that BAK1 and BRI1 can interact even while BAK1 is in complex with BIR3 at an additional binding site of BAK1 that does not allow active BR signaling.

关键词： BAK1 interaction interacting

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Current developments in pediatric liver transplantation

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World Journal of Hepatology 2015年第11期7卷 1509-1520页

作者： Christina Hackl Hans J Schlitt Martin Loss birgit Knoppke Michael Melter Department of Surgery University Hospital Regensburg KUNO-Children’s University Hospital Regensburg

In 1953, the pioneer of human orthotopic liver transplantation(LT), Thomas E Starzl, was the first to attempt an orthotopic liver transplant into a 3 years old patient suffering from biliary atresia. Thus, the first LT in humans was attempted in a disease, which, up until today, remains the main indication for pediatric LT(p LT). During the last sixty years, refinements in diagnostics and surgical technique, the introduction of new immunosuppressive medications and improvements in perioperative pediatric care have established LT as routine procedure for childhood acute and chronic liver failure as well as inherited liver diseases. In contrast to adult recipients, p LT differs greatly in indications for LT, allocation practice, surgical technique, immunosuppression and postoperative life-long aftercare. Many aspects are focus of ongoing preclinical and clinical research. The present review gives an overview of current developments and the clinical outcome of p LT, with a focus on alternatives to full-size deceased-donor organ transplantation.

关键词： Pediatric liver transplantation Deceasedorgan donation Living donor liver transplantation Splitliver transplantation Biliary atresia

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The Conditions for Se-Enzymes, NO, cGMP and LDL to be formed and How They are Connected with Each Other

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Journal of Chemistry and Chemical Engineering 2014年第3期8卷 278-285页

作者： birgit Elisabeth Swenson Chalmers Technical University Molnda143136 Sweden

Transportation of energy and substances is fundamental for the conditions of life. The energy from metabolised food is yielded at the reduction of oxygen by the assistance of Se-enzymes. Activated Se-enzymes contain an electron conducting Se-link with elemental Se bounded to Se-cys （Se-cystein） that prevents electron transferring （autoxidable） agents, as arginine, from oxidations. NO is formed from e.g. arginine during the passive state of a Se-enzyme. With NO, instead of O2, bounded to a hem group, destroying oxidations are avoided. This is the role of NO. A nerve signal is activated by the GTP （guanosine triphosphate）-induced triggered transformation of cGMP （cyclic guanosine monophosphate） into GMP, closing the sodium channels. When GTP is consumed, the opposite reaction takes place. The direct influence of the GMP/cGMP quote on a nerve signal makes GMP/cGMP equal to EDHf （endothelium-derived hyperpolarizing factor）. Part of the energy from food is stored and transported in the form of acetyl groups, building up many important molecules of which LDL （low density lipoprotein） is one, containing cholesteryl esters. These are brought in to the cell, decomposed to acetyl groups generating hydrogen, H, making LDL to an essential substance. High levels are connected to impaired energy yielding reactions, perhaps related to low levels of some substances, especially to one or both forms of Se. The necessity of a Se-link and NO induced protection against oxidations by reducible oxygen can no longer be neglected.

关键词： Se-enzymes Se-toxicity formation of NO formation of cGMP EDHf cholesteryl esters from LDI. .

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Injections of Substances Inducing Apoptosis to Cancer Cells but Stimulation of Normal Cells May Prevent Cancer

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Journal of Chemistry and Chemical Engineering 2011年第5期5卷 393-403页

作者： birgit Elisabeth Swenson Tegelformsgatan 4 Moelnda143136 Sweden

Selenium（Se） compounds have prevented and Se-deficiency has induced the initiation of cancer. Se（0）-forming compounds and hydroxy-xanthones have killed cancer ceils but shown beneficial effects to normal cells. They may together be effective in the treatment of cancer. Many enzymes which contain selenocysteine （Secys） can catalyze reactions with reducible oxygen （O2~ 02 or H202）. Experiments strongly support that Se-enzymes are activated by Se（0）, from e.g. selenite, selenodiglutathione, binding to Se（-II） in Secys, forming an electron conducting Se-link to reducible oxygen as a protection against oxidations. Cancer cells, which are energy supported only from fermentation, are not dependent on Se which is why they are more sensitive to toxic effects of Se than normal cells. The energy from fermentation is insufficient for normal cell functions. High doses of Se（0）-containing compounds are toxic in that they form links with thiols （R-S-Se） reducing their reaction rate. The reaction of an SH-enzyme, necessary in fermentation, is impaired. Mangostins （hydroxy-xanthones） induce apoptosis in human cancer ceils but stimulate respiration. The OH-groups are responsible for the effects and the reduction of NADP＋ into NADPH. fermentation is inhibited as NADP＋ is necessary for the process. Cancer may be treated by injections of Se（0）-forming compounds and hydroxy-xanthones into cancer cells in doses causing apoptosis. However, in diluted form, when meting normal cells, the substances promote the yield of energy by stimulating the electron transference to reducible oxygen. Se（0）-activated Se-links and hydrogen from hydroxy-xanthones hopefully prevent the initiation of cancer.

关键词： Cancer prevention Se-enzymes Se-link selenite nicotine hydroxy-xanthones.

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The World Stress Map

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Episodes 2007年第3期30卷 197-201页

作者： Heidbach, Oliver fuchs, Karl Müller, birgit Wenzel, friedemann Reinecker, John Tingay, Mark Sperner, Blanka Geophysical Institute Karslruhe University 76187 Karlsruhe Hertzstr. 16 Germany Heidelberg Academy of Sciences and Humanities 69117 Heidelberg Karlst. 4 Germany Institute of Geosciences University of Tübingen 72076 Tübingen Sigwartstrasse 10 Germany School of Earth and Environmental Sciences University of Adelaide Adelaide SA 5005 DP313 Mawson Building Australia Geological Institute TU Bergakademie Freiberg 09599 Freiberg Bernhard-von-Cotta-Str. 2 Germany

Knowledge of the stress field in the Earth＇s crust is a key issue for the understanding of geodynamic processes, seismic hazard assessment, and stability of underground openings such as waste disposals, tunnels, mines or wells, and reservoir management. The World Stress Map project is a collaborative project of academia, industry and governmental organizations that aims to understand the states and sources of tectonic stresses in the Earth＇s crust. We present the World Stress Map at 1：46,000,000 scale as a result of more than two decades of international collaboration. The map reveals that the first-order pattern of stress is of plate-wide scale, indi- cating that plate boundary forces are the major control of the stress orientations and the tectonic regime.

关键词：世界应力地图合作计划政府组织构造

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