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Evaluation of 10 plant barcodes in Bryophyta (Mosses)

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Journal of Systematics and Evolution 2010年第1期48卷 36-46页

作者： 1,2 Yan LIU 3 Hai-Fei YAN 4 Tong CAO 3 Xue-Jun GE 1(Institute of Applied Ecology, chinese academy of sciences, Shenyang 110016, china) 2(graduate university of the chinese academy of sciences, beijing 10004., china) 3(Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South china Botanical Garden, chinese academy of sciences, Guangzhou 510650, china) 4(College of Life & Environment sciences, Shanghai Normal university, Shanghai 200234, china) (Institute of Applied Ecology Chinese Academy of Sciences Shenyang 110016 China) (graduate university of the chinese academy of sciences Beijing 100049 China) (Key Laboratory of Plant Resources Conservation and Sustainable Utilization South China Botanical Garden Chinese Academy of Sciences Guangzhou 510650 China) (College of Life & Environment sciences Shanghai Normal University Shanghai 200234 China)

DNA barcoding is a molecular tool that uses a standardized DNA region to identify *** preliminary study reported here is the first attempt to specifically focus on universality and attributes of candidate barcodes across a wide systematic range of *** tested eight previously proposed plant barcoding regions(atpF-atpH, ITS2, matK, psbK-psbI, rbcL, rpoB, rpoC1, and trnH-psbA) and two popular phylogenetic markers(rps4 and trnL-trnF of cpDNA) in 49 moss species and 9 liverwort species, representing half of the orders in moss *** ITS2, rbcL, rpoC1, rps4, trnH-psbA and trnL-trnF regions showed good universality, and therefore the efficacy of these loci as DNA barcodes was further evaluated in 36 mosses and 2 liverworts, each of which included two to three individuals per *** five loci, ***, rpoC1, rps4, trnH-psbA and trnL-trnF, were easy to amplify and sequence and showed significant inter-specific genetic variability, making them potentially useful DNA barcodes for *** best performing single loci were the rbcL and rpoC1 coding *** loci showed equivalent performance and combinations of them did not greatly increase their discrimination *** addition, phylogenies generated from each of the separate regions and multi-locus combinations by using best-fit and Kimura 2-parameter models were compared, but no significant difference was found.

关键词： Bryophyta DNA barcoding rbcL rpoC1 rps4 trnH-psbA trnL-trnF.

An efficient chiral synthesis of (R)-N-[3-acetyl-4-(2-hydroxy-3-isopropylamino-propoxy)phenyl]-butanamide with high enantioselectivity

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Science china Chemistry 2009年第8期52卷 1216-1219页

作者： WANG NaiXing1,2 & TANG XinLiang1,3 1 Technical Institute of Physics and Chemistry,chinese academy of sciences,beijing 100080,china 2 College of Chemistry and Chemical Engineering,graduate university of chinese academy of sciences,beijing 10004.,china 3 School of Chemical Engineering and Environment,beijing Institute of Technology,beijing 100081,china Technical Institute of Physics and Chemistry Chinese Academy of Sciences Beijing China College of Chemistry and Chemical Engineering Graduate University of Chinese Academy of Sciences Beijing China School of Chemical Engineering and Environment Beijing Institute of Technology Beijing China

R-Enantiomer of the β-receptor antagonist N-[3-acetyl-4-(2-hydroxy-3-isopropylamino-propoxy)phenyl] butanamide with high enantioselectivity was synthesized from cheap starting materials and enantiopure chiral reagent through an efficient,convenient and practical synthetic *** product was detected by 1H NMR,13C NMR,and MS,and the enatiomeric excess was determined by chiral HPLC analysis using a chiracel AD-H column.

关键词： chiral synthesis enantioselectivity enatiomeric excess chiral HPLC analysis

A puzzle of the radio-quiet quasar PG 1407+265:Are optical and X-ray emissions produced from a relativistic jet?

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Science china(Physics,Mechanics & Astronomy) 2011年第1期54卷 183-186页

作者： CHEN Liang 1,2,3 & BAI JinMing 1,2 1 National Astronomical Observatories/Yunnan Observatory,chinese academy of sciences,Kunming 650011,china 2 Key Laboratory for the Structure and Evolution of Celestial Objects,chinese academy of sciences,Kunming 650011,china 3 graduate university of chinese academy of sciences,beijing 10004.,china National Astronomical Observatories/Yunnan Observatory Chinese Academy of Sciences Kunming China Key Laboratory for the Structure and Evolution of Celestial Objects Chinese Academy of Sciences Kunming China graduate university of chinese academy of sciences Beijing China

PG 1407+265 is a radio quiet quasar that has a relativistic *** this report,we show some peculiar properties of its optical and X-ray emissions,which indicate possible non-thermal origins produced from the *** use a simple synchrotron + synchrotron self Compton (SSC) model to fit the emissions with different ratios of energy densities between the magnetic field and electrons (η≡U B/U e),which predicts a different γ-ray *** First LAT AGN Catalog (1LAC) did not include PG 1407+265,which indicates an upper limit of γ-ray *** upper limit constrains the ratio to be unreasonably large (η≥10 4-5).This inversely indicates that the optical and X-ray emissions may not be produced from the beaming *** discuss the physical implications of these results.

关键词： active galactic nuclei jet non-thermal emission PG 1407+265

Periodicity of Retzius lines in fossil Pongo from South china

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chinese Science Bulletin 2012年第7期57卷 790-794页

作者： HU Rong1,2,3, ZHAO LingXia1,2 & WU XinZhi2 1 Key Laboratory of Evolutionary Systematics of Vertebrates, Institute of Vertebrate Paleontology and Paleoanthropology, chinese academy of sciences, beijing 10004., china 2 Laboratory of Human Evolution, Institute of Vertebrate Paleontology and Paleoanthropology, chinese academy of sciences, beijing 10004., china 3 graduate university of chinese academy of sciences, beijing 10004., china Key Laboratory of Evolutionary Systematics of Vertebrates Institute of Vertebrate Paleontology and Paleoanthropology Chinese Academy of Sciences Beijing China Laboratory of Human Evolution Institute of Vertebrate Paleontology and Paleoanthropology Chinese Academy of Sciences Beijing China graduate university of chinese academy of sciences Beijing China

Periodicity of Retzius lines is a key factor in dental development. In this study, we examined the periodicity of Retzius lines in fossil Pongo from South china using polarized light microscope observation of dental ground sections. The periodicities all of the 15 teeth were 9 d. Comparisons of periodicity were made with extant primates, fossil apes and hominins. Periodicity of fossil Pongo from South china was relatively long but fell within the variation of extant Pongo, Gorilla and modern human, and longer than periodicity of Pan and other extant primates. Fossil Pongo from South china was similar to Lufengpithecus and Sivapithecus, shorter than Gigantopithecus and longer than European and African fossil apes and most early hominins in periodicity. Generally, the periodicities of Asian large-body fossil apes were longer than the periodicities of European and African large-body fossil apes in Miocene. Difference among species and trend of evolution in periodicity were analyzed and discussed. We found that periodicity might gradually increase from Proconsul in early Miocene to several fossil apes in Miocene and then Gigantopithecus in Pleistocene. In addition, this study made correlate analysis between periodicity and body mass respectively in males and females of six extant apes and five fossil apes, and found that periodicity positively correlated with body mass.

关键词：周期性变化中国南方大猩猩化石灵长类动物早中新世类人猿显微镜观察

Terrestrial transect study on driving mechanism of vegetation changes

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Science china Earth sciences 2008年第7期51卷 984-991页

作者： ZHANG YuJin1,2 & ZHOU GuangSheng1 1 State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, chinese academy of sciences, beijing 100093, china 2 graduate university of chinese academy of sciences, beijing 10004., china State Key Laboratory of Vegetation and Environmental Change Institute of Botany Chinese Academy of Sciences Beijing China graduate university of chinese academy of sciences Beijing China

In terms of chinese climate-vegetation model based on the classification of plant functional types, to- gether with climatic data from 1951 to 1980 and two future climatic scenarios (SRES-A2 and SRES-B2) in china from the highest and the lowest emission scenarios of greenhouse gases, the distribution patterns of vegetation types and their changes along the Northeast china Transect (NECT) and the North-South Transect of Eastern china (NSTEC) were simulated in order to understand the driving mechanisms of vegetation changes under climatic change. The results indicated that the vegetation distribution patterns would change significantly under future climate, and the major factors driving the vegetation changes were water and heat. However, the responses of various vegetation types to the changes in water and heat factors were obviously different. The vegetation changes were more sensi- tive to heat factors than to water factors. Thus, in the future climate warming will significantly affect vegetation distribution patterns.

关键词： driving mechanism vegetation terrestrial transect climatic change plant functional types

A new class of symmetric periodic solutions of the spatial elliptic restricted three-body problem

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Science china(Physics,Mechanics & Astronomy) 2009年第9期52卷 1404-1413页

作者： XU XingBo1,2 & FU YanNing1 1 Purple Mountain Observatory, chinese academy of sciences, Nanjing 210008, china 2 graduate university of chinese academy of sciences, beijing 100039, china Purple Mountain Observatory Chinese Academy of Sciences Nanjing China graduate university of chinese academy of sciences Beijing China

We show that there exists a new class of symmetric periodic solutions of the spatial elliptic restricted three-body problem. In such a solution, the infinitesimal body is confined to the vicinity of a primary and moves on a nearly circular orbit. This orbit is almost perpendicular to the orbital plane of the primaries, where the line of symmetry of the orbit lies. The existence is shown by applying a corollary of Arenstorf's fixed point theorem to a periodicity equation system of the problem. And this existence doesn't require any restriction on the mass ratio of the primaries, nor on the eccentricity of their relative elliptic orbit. Potential relevance of this new class of periodic solutions to real celestial body systems and the follow-up studies in this respect are also discussed.

关键词： periodic orbits spatial restricted three-body problem symmetric orbits averaging

Rate of strong consistency of quasi maximum likelihood estimate in generalized linear models

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Science china Mathematics 2004年第6期47卷 882-893页

作者： YUE Li & CHEN Xiru School of Mathematics and Statistics, Wuhan university, Wuhan 430072, china graduate School, chinese academy of sciences, beijing 100039, china School of Mathematics and Statistics Wuhan University Wuhan China graduate School Chinese Academy of Sciences Beijing China

Under the assumption that in the generalized linear model (GLM) the expectation of the response variable has a correct specification and some other smooth conditions, it is shown that with probability one the quasi-likelihood equation for the GLM has a solution when the sample size n is sufficiently large. The rate of this solution tending to the true value is determined. In an important special case, this rate is the same as specified in the LIL for iid partial sums and thus cannot be improved anymore.

关键词： quasi-likelihood function generalized linear models strong consistency

The influence of moderate ENSO on summer rainfall in eastern china and its comparison with strong ENSO

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chinese Science Bulletin 2008年第5期53卷 791-800页

作者： XUE Feng1 & LIU ChangZheng1,2 1 Institute of Atmospheric Physics, chinese academy of sciences, beijing 100029, china 2 graduate university of chinese academy of sciences, beijing 10004., china Institute of Atmospheric Physics Chinese Academy of Sciences Beijing China graduate university of chinese academy of sciences Beijing China

The 6 major ENSO events since 1979 are classified into the strong and moderate ENSO based on in-tensity. The composite analysis is performed to reveal the influence of ENSO on East Asian summer monsoon (EASM) and summer rainfall in eastern china. It is shown that the influence is changed with the seasonal cycle in summer, with a weaker influence in June and a stronger influence in August, in-dicating a long lagged effect of ENSO on EASM. Besides, the circulation and rainfall anomalies caused by the strong ENSO are also stronger with an earlier starting time, while the influence of the moderate ENSO is evident in August. The composite summer rainfall in eastern china for the moderate ENSO exhibits a northern rainfall pattern, which is totally different from the classical ENSO-type rainfall pat-tern. Based on the composite analysis, two moderate ENSO years with a similar intensity (i.e., 1995 and 2003) are compared. The result shows that, the response of EASM to the moderate ENSO during June and July is, to a certain degree, modulated by the circulation systems in mid-high latitudes of Eurasia and in the Southern Hemisphere, thereby inducing a different rainfall distribution in eastern china. In comparison with the strong ENSO in 1983, it is further revealed that, the strong ENSO plays a dominant role in summer rainfall anomalies in eastern china as well as in controlling the influence of the other factors on EASM. The strong ENSO is therefore different with the moderate ENSO.

关键词：中国东部海洋气象学厄尔尼诺现象东亚季风降雨

Overview of HBV whole genome data in public repositories and the chinese HBV reference sequences

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Progress in Natural Science:Materials International 2008年第1期18卷 13-20页

作者： Guanghua Wu a,b, Huiguo Ding c, Changqing Zeng b,* a graduate School of chinese academy of sciences, beijing 10004., china b beijing Institute of Genomics, chinese academy of sciences, beijing 101300, china c beijing Youan Hospital, Capital Medical university, beijing 100069, china graduate School of chinese academy of sciences Beijing 100049 China beijing Institute of Genomics Chinese Academy of Sciences Beijing 101300 China beijing Youan Hospital Capital Medical University Beijing 100069 China

The number of Hepatitis B virus (HBV) whole genomic sequences in public nucleotide databases (GenBank, EMBL, and DDBJ) had reached 866 by January 1, 2007. Coming from 46 countries and regions, these sequences were categorized as eight genotypes (A–H). With the statistical and phylogenetic analysis on all available complete genomic data of HBV, we here present an overview of HBV sequences in public databases. From all registered 229 HBV genomes in chinese regions as well as 59 sequencing data from our research group, we report the establishment of reference sequences of HBV strains prevailing in china. These analyses provide clues for the effects of HBV genotypes in host clinical progressions, geographic distribution of the infection, and the viral evolutionary history. Moreover, the viral sequence reference would be helpful in the identiffcation of various HBV mutations. Based on the analysis of various public databases, we suggest that the chinese HBV database with the clinical information should be constructed.

关键词： Public databases HBV genomic sequences Genotype Subtype chinese reference sequences