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Vermicompost:In situ retardant of antibiotic resistome accumulation in cropland soils

Journal of Environmental Sciences 2024年第7期141卷 277-286页

作者： Meirui Mu Fengxia Yang Bingjun Han Guisheng Tian Keqiang Zhang Agro-Environmental Protection Institute Ministry of Agriculture and Rural AffairsTianjin 300191China Key Laboratory of Low-carbon Green agriculture in North China Ministry of Agriculture and Rural Affairs P.R.ChinaBeijing 10083China Wuxue City agriculture and rural Bureau Wuhan 435400China

The dissemination of antibiotic resistance genes(ARGs)in soil has become a global environmental *** is gaining prominence in agricultural practices as a soil amendment to improve soil ***,its impact on soil ARGs remains unclear when it occurs in *** comprehensively explored the evolution and fate of ARGs and their hosts in the field soil profiles under vermicompost application for more than *** application increased several ARG loads in soil environment but decreased the high-risk bla-ARGs(bla_(ampC),bla_(NDM),and bla_(GES-1))by log(0.04-0.43).ARGs in soil amended with vermicompost primarily occurred in topsoil(approximately 1.04-fold of unfertilized soil),but it is worth noting that their levels in the 40-60 cm soil layer were the same or even less than in the unfertilized *** microbial community structure changed in soil profiles after vermicompost *** application altered the microbial community structure in soil profiles,showing that the dominant bacteria(i.e.,Proteobacteria,Actinobacteriota,Firmicutes)were decreased 2.62%-5.48%with the increase of soil depth.A network analysis further revealed that most of ARG dominant host bacteria did not migrate from surface soil to deep *** particular,those host bacteria harboring high-risk bla-ARGs were primarily concentrated in the surface *** study highlights a lower risk of the propagation of ARGs caused by vermicompost application and provides a novel approach to reduce and relieve the dissemination of ARGs derived from animals in agricultural production.

关键词： Vermicompost application Antibiotic resistance genes Vertical migration Soil profile Agricultural soils

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Passivation remediation of weakly alkaline Cd-contaminated soils using combined treatments of biochar and sepiolite

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Ecological Processes 2024年第1期13卷 40-52页

作者： Yuxin Zhang Shan Gao Hongtao Jia Tao Sun Shunan Zheng Shihang Wu Yuebing Sun Key Laboratory of Original AgroEnvironmental Pollution Prevention and Control Ministry of Agriculture and Rural Affairs (MARA)/Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety Agro–Environmental Protection InstituteMARA College of Resources and Environment Sciences Xinjiang Agricultural University rural Energy and Environment Agency Ministry of Agriculture and Rural Affairs

Background Cadmium(Cd) pollution in agricultural soils has become a priority environmental concern globally. A reasonable application of passivators is critical to address the problem. In this study, we examined the remediation effects of rice husk biochar(r BC) and sepiolite(Sep) as single and combined(r BC + Sep) treatments on Cd pollution in a weakly alkaline soil using three maize cultivars(Liyu 16, Zhengdan 958, and Sanbei 218) as test crops. We also explained the mechanisms involved in the remediation *** The pseudo-second-order kinetic equation and Langmuir model could well describe the adsorption process of r BC + Sep for Cd2+. Compared with the control treatment(CK), soil available Cd concentration decreased by 29.51–36.34% under r BC + Sep treatment(p 0.05).Conclusions The application of 0.2% r BC + 0.5% Sep composite passivation material to weakly alkaline Cd-contaminated soil can effectively reduce the Cd concentration of soil and maize.

关键词： Cd Rice husk biochar Sepiolite Passivation restoration Weakly alkaline soil Maize

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Performance test of a half-feed peanut-cleaning picker suitable for clay hill areas in southern China

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International Journal of Agricultural and Biological Engineering 2024年第4期17卷 156-164页

作者： Shenying Wang Zhaoyan You Dawei Sun Qiang Xiao Qiaojun Luo Lin He Key Laboratory of Modern Agricultural Intelligent Equipment in South China Ministry of Agriculture and Rural AffairsGuangzhou 510630China Nanjing Institute of Agricultural Mechanization Ministry of Agriculture and Rural AffairsNanjing 210014China Key Laboratory of Agricultural Equipment for Hilly and Mountainous Areas in Southeastern China(Co-construction by ministry and Province) Ministry of Agriculture and Rural AffairsHangzhou 310021China Inner Mongolia Autonomous Region Agricultural and Animal Husbandry Technology Promotion Center Hohhot 010000China

To solve the problems of excessive soil lumps,broken branches and seedlings in pods and difficulty in removing impurities in the harvested pods of peanuts in the hilly areas of southern China,which is due to the high soil viscosity and easy hardening,and to improve the soil removal effect of the peanut half-feed pod picker in hilly areas of China,this article designed a half-feed peanut-cleaning picker suitable for southern clay hilly areas and provided a detailed introduction to the overall structure,working principle,and adjustment methods of various operating *** field measurement experiments,the influencing factors and laws of soil removal performance indicators,such as the comprehensive soil removal rate and POD drop rate,were *** results showed that the comprehensive soil removal rate gradually increased with increasing soil patting frequency,soil patting amplitude,and picking roller speed,first increased and then decreased with increasing picking roller gap and gradually decreased with increasing soil patting plate gap and clamping conveyor chain *** comprehensive soil removal rate of the soil patting plate using the opposite patting method was greater than that of the swinging patting *** soil removal pod drop rate increased gradually with increasing soil patting frequency and amplitude and decreased with increasing soil patting plate gap and clamping conveyor chain *** soil removal pod drop rate of the soil patting plate using swing patting was lower than that using the opposite patting *** speed and gap of the picking roller had no effect on the soil removal pod drop *** frequency,amplitude,form,and gap of the soil patting plate had extremely significant impacts on the rate of decrease in the number of soil removal pod drop *** clamping conveyor chain speed had a significant impact,while the speed and gap of the picking roller had no significant *** influence of all factors on the comprehens

关键词： peanut southern clay hilly areas picker comprehensive soil removal rate soil removal pod drop rate

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Rapid and Sensitive Biosensing of Salmonella Using Mechanical Step Rotation and Gold@platinum Nanozymatic Amplification

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Journal of Analysis and Testing 2024年第3期8卷 262-269页

作者： Meixuan Li Lei Wang Ai Xu Ying Ding Fengzhen Yang Yanbin Li Jianhan Lin Key Laboratory of Agricultural Information Acquisition Technology Ministry of Agriculture and Rural AffairsChina Agricultural University Center of Excellence for Poultry Science University of Arkansas

Inspired by ballpoint pen, an optical biosensor is developed for detection of Salmonellausing a mechanical step rotator with a dropper to greatly simplify operation, a high gradient magnetic field with immune magnetic nanobeads to specifically separate bacteria, and immune gold@platinum nanozymes with a smartphone to sensitively detect bacteria. First, the preloaded bacterial sample is drawn by the dropper to react with the immune magnetic nanobeads through repeated squeezing and releasing of the dropper, and the rotator is successively rotated and the dropper is repeatedly squeezed and released to achieve mixing of the bacteria, magnetic nanobeads and gold@platinum nanozymes, followed by magnetic separation to remove the background. Then, the conjugates are eff ectively washed with skim milk and ultrapure water, and the substrate are rapidly catalyzed into the product. Finally, the blue product is photographed and analyzed using a smartphone to obtain the Salmonella concentration. This biosensor could detect Salmonellaas low as 56 CFU/mL in～25 min.

关键词： gold@platinum nanozyme magnetic grid separation mechanical step rotator optical biosensor Salmonella detection

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A vicinal oxygen chelate protein facilitates viral infection by triggering the unfolded protein response in Nicotiana benthamiana

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Journal of Integrative Plant Biology 2024年第7期66卷 1481-1499页

作者： Zhihong Guo Ning Jiang Menglin Li Hongfang Guo Qi Liu Xinyu Qin Zongying Zhang Chenggui Han Ying Wang ministry of agriculture and rural affairs Key Laboratory of Pest Monitoring and Green Management College of Plant ProtectionChina Agricultural UniversityBeijing 100193China

Vicinal oxygen chelate(VOC)proteins are members of an enzyme superfamily with dioxygenase or non-dioxygenase ***,the biological functions of VOC proteins in plants are poorly ***,we show that a VOC in Nicotiana benthamiana(NbVOC1)facilitates viral ***1 was significantly induced by infection by beet necrotic yellow vein virus(BNYVV).Transient overexpression of NbVOC1 or its homolog from Beta vulgaris(BvVOC1)enhanced BNYVV infection in ***,which required the nuclear localization of *** with this result,overexpressing NbVOC1 facilitated BNYVV infection,whereas,knockdown and knockout of NbVOC1 inhibited BNYVV infection in transgenic *** ***1 interacts with the basic leucine zipper transcription factors bZIP17/28,which enhances their self-interaction and DNA binding to the promoters of unfolded protein response(UPR)-related *** propose that bZIP17/28 directly binds to the NbVOC1 promoter and induces its transcription,forming a positive feedback loop to induce the UPR and facilitating BNYVV ***,our results demonstrate that NbVOC1 positively regulates the UPR that enhances viral infection in plants.

关键词： beet necrotic yellow vein virus bZIP17/28 Nicotiana benthamiana unfolded protein response VOC1

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A vision system based on CNN-LSTM for robotic citrus sorting Author links open overlay panel

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Information Processing in agriculture 2024年第1期11卷 14-25页

作者： Yonghua Yu Xiaosong An Jiahao Lin Shanjun Li Yaohui Chen College of Engineering Huazhong Agricultural UniversityWuhan 430070China Key Laboratory of Agricultural Equipment in Mid-Lower Yangtze River Ministry of Agriculture and Rural AffairsWuhan 430070China National R&D Center for Citrus Preservation Wuhan 430070China Citrus Mechanization Research Base Ministry of Agriculture and Rural AffairsWuhan 430070China

Compared with manual sorting of citrus fruit,vision-based sorting solutions can help achieve higher accuracy and *** this study,we present a vision system based on CNN-LSTM,which can cooperate with robotic grippers for real-time sorting and is readily applicable to various citrus processing plants.A CNN-based detector was adopted to detect the defective oranges in view and temporarily classify them into corresponding types,and an LSTM-based predictor was used to predict the position of the oranges in a future frame based on image sequential *** fusion of CNN and LSTM networks enabled the system to track defective ones during rotation and identify their true types,and their future path was also predicted which is vital for predictive control of visually guided robotic *** detection accuracy of 94.1%was obtained based on experimental results,and the error for path prediction was within 4.33 pixels 40 frames *** average time to process a frame was between 28 and 62 frames per second,which also satisfied real-time *** results proved the potential of the proposed system for automated citrus sorting with good precision and efficiency,and it can be readily extended to other fruit crops featuring high versatility.

关键词： Deep learning Long short-term memory Vision system Online citrus sorting Path prediction

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OcBSA:An NGS-based bulk segregant analysis tool for outcross populations

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Molecular Plant 2024年第4期17卷 648-657页

作者： Lingkui Zhang Yanfeng Duan Zewei Zhang Lei Zhang Shumin Chen Chengcheng Cai Shaoguang Duan Kang Zhang Guangcun Li Feng Cheng State Key Laboratory of Vegetable Biobreeding Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture and Rural AffairsKey Laboratory of Biology and Genetic Improvement of Tuber and Root Crop of Ministry of Agriculture and Rural AffairsSino-Dutch Joint Laboratory of Horticultural GenomicsInstitute of Vegetables and FlowersChinese Academy of Agricultural SciencesBeijing 100081China

Constructing inbred lines for self-incompatible species and species with long generation times is challenging,making the use of F1 outcross/segregating populations the main strategy for genetic studies of such ***,there is a lack of dedicated algorithms/tools for rapid quantitative trait locus(QTL)mapping using the F1 *** this end,we have designed and developed an algorithm/tool called OcBSA specifically for QTL mapping of F1 *** transforms the four-haplotype inheritance problem from the two heterozygous diploid parents of the F1 population into the two-haplotype inheritance problem common in current genetic studies by removing the two haplotypes from the heterozygous parent that do not contribute to phenotype segregation in the F1 *** of OcBSA on 1800 simulated F1 populations demonstrated its advantages over other currently available tools in terms of sensitivity and *** addition,the broad applicability of OcBSA was validated by QTL mapping using seven reported F1 populations of apple,pear,peach,citrus,grape,tea,and *** also used OcBSA to map the QTL for flower color in a newly constructed F1 population of potato generated in this *** OcBSA mapping result was verified by the insertion or deletion markers to be consistent with a previously reported locus harboring the ANTHOCYANIN 2 gene,which regulates potato flower *** together,these results highlight the power and broad utility of OcBSA for QTL mapping using F1 populations and thus a great potential for functional gene mining in outcrossing *** ease of use,we have developed both Windows and Linux versions of OcBSA,which are freely available at:https://***/Bioinformaticslab/OcBSA.

关键词： outcross BSA self-incompatible F1 population QTL mapping potato

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Effect of biochar application on rice,wheat,and corn seedlings in hydroponic culture

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Journal of Environmental Sciences 2024年第1期135卷 379-390页

作者： Yingjie Yin Jikai Li Sihang Zhu Qing Chen Chong Chen Yukui Rui Jianying Shang College of Land Science and Technology China Agricultural UniversityKey Laboratory of Plant-Soil InteractionsMinistry of Educationand Key Laboratory of Arable Land Conservation in North ChinaMinistry of Agriculture and Rural AffairsBeijing 100193China Agricultural Management Institute Ministry of Agriculture and Rural AffairsBeijing 102208China College of Resources and Environmental Sciences China Agricultural UniversityBeijing Key Laboratory of Farmland Soil Pollution Prevention and RemediationBeijing 100193China

In recent years,biochar has attracted considerable attention for soil quality improvement and carbon sequestration due to its unique physicochemical ***,the mechanism by which biochar application negatively affects the growth of crop seedlings has not been fully *** this study,a hydroponic experiment was conducted to evaluate the response of rice,wheat,and corn seedlings to biochar application(CK,0 g/L;BC1,0.5 g/L;and BC2,1.0 g/L).Compared with the CK treatment,the BC1 and BC2 treatments decreased the fresh shoot and root weights of rice and corn seedlings(P0.05).For the contents of nutrient elements in seedlings,both BC1 and BC2 treatments hindered the roots from absorbing Fe and Cu and increased the uptake of Ca and *** with the CK treatment,the translocation factor(TF)values of Ca,Mn,and Zn were significantly decreased especially in rice seedlings(35.3%-36.8%,68.7%-76.5%,and 29.8%-22.0%,respectively)under the BC1 and BC2 treatments,while only Mn was significantly decreased in wheat and corn seedlings(P<0.05).Transmission electron microscope(TEM)analysis of root cross-sections showed that nano-sized biochar particles(10~23 nm)were found in the root cells under BC2 treatment *** findings reveal that a large amount of biochar application can reduce nutrient absorption and translocation,and hinder rice,wheat,and corn seedlings,particularly rice seedling,in hydroponic system.

关键词： Biochar Toxicity Seedling growth Hydroponic cultivation

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Interaction Between Ustilaginoidea virens and Rice and Its Sustainable Control

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Rice science 2024年第3期31卷 269-284页

作者： ZHANG Fengmin CAO Zhenzhen ZHENG Xin HE Yuntao CHEN Mingxue LIN Xiaoyan Rice Product Quality Inspection&Supervision Testing Center of ministry of agriculture and rural affairs China National Rice Research InstituteHangzhou 310006China

Ustilaginoidea virens is a common rice pathogen that can easily lead to a decline in rice quality and the production of toxins pose potential risks to human *** this review,we present a comprehensive literature review of research since the discovery of rice false *** provide a comprehensive and,at times,critical overview of the main results and findings from related research,and propose future research ***,we delve into the interaction between *** and rice,including the regulation of transcription factors,the process of *** infecting rice panicles,and the plant immune response caused by rice *** that,we discuss the identification and characterization of mycotoxins produced by the pathogenic fungus,as well as strategies for disease *** emphasize the importance of comprehensive agricultural prevention and control methods for the sustainable management of *** knowledge will update our understanding of the interaction between *** and rice plants,offering a valuable perspective for those interested in ***.

关键词： rice false smut flower-specific infection mycotoxin food safety plant disease

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BSAlign:A Library for Nucleotide Sequence Alignment

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Genomics, Proteomics & Bioinformatics 2024年第2期22卷 135-142页

作者： Haojing Shao Jue Ruan Shenzhen Branch Guangdong Laboratory of Lingnan Modern AgricultureGenome Analysis Laboratory of the Ministry of Agriculture and Rural AffairsAgricultural Genomics Institute at ShenzhenChinese Academy of Agricultural SciencesShenzhen 518120China

Increasing the accuracy of the nucleotide sequence alignment is an essential issue in genomics *** classic dynamic programming(DP)algorithms(e.g.,Smith–Waterman and Needleman–Wunsch)guarantee to produce the optimal result,their time complexity hinders the application of large-scale sequence *** optimization efforts that aim to accelerate the alignment process generally come from three perspectives:redesigning data structures[e.g.,diagonal or striped Single Instruction Multiple Data(SIMD)implementations],increasing the number of parallelisms in SIMD operations(e.g.,difference recurrence relation),or reducing search space(e.g.,banded DP).However,no methods combine all these three aspects to build an ultra-fast *** this study,we developed a Banded Striped Aligner(BSAlign)library that delivers accurate alignment results at an ultra-fast speed by knitting a series of novel methods together to take advantage of all of the aforementioned three perspectives with highlights such as active F-loop in striped vectorization and striped move in banded *** applied our new acceleration design on both regular and edit distance pairwise *** achieved 2-fold speed-up than other SIMD-based implementations for regular pairwise alignment,and 1.5-fold to 4-fold speed-up in edit distance-based implementations for long *** is implemented in C programing language and is available at https://***/ruanjue/bsalign.

关键词： Pairwise alignment Edit distance Striped vectorization Banded dynamic programming F evaluation

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