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Arabidopsis thaliana AtUTr7 Encodes a Golgi-Localized UDP-Glucose/UDP-Galactose Transporter that Affects Lateral Root Emergence

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Molecular Plant 2012年第6期5卷 1263-1280页

作者： Michael Handford Cecilia Rodriguez-Furlan Lorena Marchan Marcelo Segura Daniela Gomez Elena Alvarez-Buyllal Guang-Yan Xiong Markus Pauly Ariel Orellana Department of Biology Faculty of Sciences University of Chile Santiago Chile present address: Department of Biochemistry University of Cambridge Cambridge CB2 1QW UK Centro de Biotecnologia Vegetal Facultad de Ciencias Biologicas Universidad Andres Bello Republica 217 Santiago Chile present address: Facultad de Ciencias Biologicas Universidad AndrOs Bello Vina del Mar Chile present address: Department of Pathobiology School of Veterinary Medicine University of Pennsylvania Philadelphia PA USA Instituto de Ecologia UNAM Mexico City Mexico Department of Plant and Microbial Biology University of California Berkeley CA 94720 USA FONDAP Center for Genome Regulation

Nucleotide sugar transporters （NSTs） are antiporters comprising a gene family that plays a fundamental role in the biosynthesis of complex cell wall polysaccharides and glycoproteins in plants. However, due to the limited number of related mutants that have observable phenotypes, the biological function（s） of most NSTs in cell wall biosynthesis and assembly have remained elusive. Here, we report the characterization of AtUTr7 from Arabidopsis （Arabidopsis thaliana （L.） Heynh.）, which is homologous to multi-specific UDP-sugar transporters from Drosophila melanogaster, humans, and Caenorhabditis elegans. We show that AtUTr7 possesses the common structural characteristics conserved among NSTs. Using a green fluorescent protein （GFP） tagged version, we demonstrate that AtUTr7 is localized in the Golgi apparatus. We also show that AtUTr7 is widely expressed, especially in the roots and in specific floral organs. Additionally, the results of an in vitro nucleotide sugar transport assay carried out with a tobacco and a yeast expression system suggest that AtUTr7 is capable of transferring UDP-Gal and UDP-GIc, but not a range of other UDP- and GDP-sugars, into the Golgi lumen. Mutants lacking expression of AtUTr7 exhibited an early proliferation of lateral roots as well as distorted root hairs when cultivated at high sucrose concentrations. Furthermore, the distribution of homogalacturonan with a low degree of methyl esterification differed in lateral root tips of the mutant compared to wild-type plants, although additional analytical procedures revealed no further differences in the composition of the root cell walls. This evidence suggests that the transport of UDP-Gal and UDP-GIc into the Golgi under conditions of high root biomass production plays a role in lateral root and root hair development.

关键词： nucleotide sugars nucleotide sugar transporters Golgi apparatus cell wall.

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Multicolor Photochromism of Polymolybdate-Citric Acid Composite Films

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Chinese Journal of Chemistry 2005年第8期23卷 1037-1041页

作者：王静张光晋杨文胜姚建年 Key Laboratory of Photochemistry Center for Molecular Science Institute of Chemistry Chinese Academy of Sciences Beijing 100080 China present address: College of Chemistry Jilin University Changchun 130023 China

Photochromic polymolybdate-citric acid composite films were fabricated. It was found that after UV irradiation the composite films with different molar ratios of organic/inorganic components exhibited different colors. The UV-irradiated films showed dark blue, dark khaki and light sea green colors when the ratios were 1.0, 0.3 and 0.2, respectively. It was identified by Raman spectra that the polymolybdate species formed in the composite films after UV irradiation were sensitive to the ratios of the organic/inorganic components, thus resulting in the different colors of irradiated films. Citric acid played an important role during the photochromic process. Under UV light irradiation, it served as hole scavenger that suppresses the recombination of photogenerated electrons and holes to make the polymolybdates show UV light photochromism.

关键词： polymolybdate composite photochromism

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Spontaneous emission in non-local materials

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Light(Science & Applications) 2016年第1期5卷 1-10页

作者： Pavel Ginzburg Diane J Roth Mazhar E Nasir Paulina Segovia Alexey V Krasavin James Levitt Liisa M Hirvonen Brian Wells Klaus Suhling David Richards Viktor A Podolskiy Anatoly V Zayats Department of Physics King’s College LondonStrandLondon WC2R 2LSUK present address:School of Electrical Engineering Tel Aviv UniversityTel Aviv 69978Israel Department of Physics and Applied Physics University of Massachusetts LowellOne University AveLowellMA 01854USA present address:Department of Physics University of HartfordWest HartfordCT 06117USA

Light–matter interactions can be strongly modified by the surrounding ***,we report on the first experimental observation of molecular spontaneous emission inside a highly non-local metamaterial based on a plasmonic nanorod *** show that the emission process is dominated not only by the topology of its local effective medium dispersion,but also by the non-local response of the composite,so that metamaterials with different geometric parameters but the same local effective medium properties exhibit different Purcell factors.A record-high enhancement of a decay rate is observed,in agreement with the developed quantitative description of the Purcell effect in a non-local *** engineered material non-locality introduces an additional degree of freedom into quantum electrodynamics,enabling new applications in quantum information processing,photochemistry,imaging and sensing with macroscopic composites.

关键词： composite electromagnetic materials non-local optical properties plasmonic metamaterials quantum electrodynamics spontaneous emission

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Rapid micro-immunohistochemistry

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Microsystems & Nanoengineering 2020年第1期6卷 285-294页

作者： Robert D.Lovchik David Taylor Govind Kaigala IBM Research Europe Saeumerstrasse 48803 RueschlikonSwitzerland present address:Eidgenossische Technische Hochschule Zurich Department of Mechanical and Process EngineeringSonneggstrasse 38092 ZurichSwitzerland

We present a new and versatile implementation of rapid and localized immunohistochemical staining of tissue ***(IHC)comprises a sequence of specific biochemical reactions and allows the detection of specific proteins in tissue *** the rapid implementation of IHC,we fabricated horizontally oriented microfluidic probes(MFPs)with functionally designed apertures to enable square and circular footprints,which we employ to locally expose a tissue to time-optimized sequences of different *** show that the two main incubation steps of IHC protocols can be performed on MDAMB468-1510A cell block sections in less than 30 min,compared to incubation times of an hour or more in standard *** analysis on the timescale of tens of minutes could potentially be applied during surgery,enabling clinicians to react in more dynamically and ***,this rapid IHC implementation along with conservative tissue usage has strong potential for the implementation of multiplexed assays,allowing the exploration of optimal assay conditions with a small amount of tissue to ensure high-quality staining results for the remainder of the sample.

关键词： versatile steps sections

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Interactions of complement proteins C1q and factor H with lipid A and Escherichia coli:further evidence that factor H regulates the classical complement pathway

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Protein & Cell 2011年第4期2卷 320-332页

作者： Lee Aun Tan Andrew C.Yang Uday Kishore Robert B.Sim Medical Research Council Immunochemistry Unit Department of BiochemistryUniversity of OxfordSouth Parks RoadOxford OX13QUUK present address:Department of Immunology Faculty of MedicineImperial College LondonHammersmith HospitalDu Cane RoadLondon W120NNUK St Peter’s College New Inn Hall St.Oxford OX12DLUK present address:SUNY Downstate College of Medicine 450 Clarkson Avenue BrooklynNY 11203USA Weatherall Institute of Molecular Medicine John Radcliffe HospitalUniversity of OxfordHeadingtonOxford OX39DSUK present address:Center for Infection Immunity and Disease MechanismsBiosciencesSchool of Health Sciences and Social CareBrunel UniversityUxbridge UB83PH West LondonUK present address:Department of Pharmacology University of OxfordMansfield RoadOxford OX13QTUK

Proteins of the complement system are known to interact with many charged *** recently characterized binding of C1q and factor H to immobilized and liposomal anionic *** H inhibited C1q binding to anionic phospholipids,suggesting a role for factor H in regulating activation of the complement classical pathway by anionic *** extend this finding,we examined interactions of C1q and factor H with lipid A,a well-characterized activator of the classical *** report that C1q and factor H both bind to immobilized lipid A,lipid A liposomes and intact Escherichia coli *** H competes with C1q for binding to these ***,increasing the factor H:C1q molar ratio in serum diminished C4b fixation,indicating that factor H diminishes classical pathway *** recombinant forms of the Cterminal,globular heads of C1q A,B and C chains bound to lipid A and *** in a manner qualitatively similar to native C1q,confirming that C1q interacts with these targets via its globular head *** observations reinforce our proposal that factor H has an additional complement regulatory role of down-regulating classical pathway activation in response to certain *** is distinct from its role as an alternative pathway *** suggest that under physiological conditions,factor H may serve as a downregulator of bacterially-driven inflammatory responses,thereby finetuning and balancing the inflammatory response in infections with Gram-negative bacteria.

关键词： complement lipid A bacteria factor H C1q

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IgD class switch recombination is not controlled through the immunoglobulin heavy chain 3′ regulatory region super-enhancer

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Cellular & Molecular Immunology 2017年第10期14卷 871-874页

作者： Hussein Issaoui Nour Ghazzaui Alexis Saintamand Yves Denizot François Boyer UMR CNRS 7276 University of LimogesCBRS87025 LimogesFrance present address:INSERM U1236 UniversitéRennes 1RennesFrance

In secondary lymphoid organs,mature B cells express membrane immunoglobulin(Ig)of M and D isotypes(IgM and IgD,respectively)of the same specificity through alternative splicing of a pre-mRNA encompassing the VDJ variable region and Cμand Cδheavy chain constant exons.1 After encountering antigen,B cells undergo class switch recombination(CSR)by which the Cμgene is substituted with Cγ,Cεor Cα,thereby generating IgG,IgE and IgA antibodies of the same antigenic specificity but with new effector *** requires the DNA-editing enzyme activation-induced deaminase(AID).

关键词： functions. substituted thereby

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Conservation and Diversification of the SHR-SCR- SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots

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Molecular Plant 2016年第8期9卷 1197-1209页

作者： Eun Kyung Yoon Souvik Dhar Mi-Hyun Lee Jae Hyo Song Shin Ae Lee Gyuree Kim Sejeong Jang Ji Won Choi Jeong-Eun Choe Jeong Hoe Kim Myeong Min Lee Jun Lim Department of Systems Biotechnology Konkuk University Seoul 05029 Korea Department of Systems Biology Yonsei University Seoul 03722 Korea Department of Biology Kyungpook National University Daegu 41566 Korea 4TheSe tlRors cotribCited equally/to ttats article present address: Department of Agricultural Biotechnology National Institute of Agricultural Sciences Jeonju 54874 Korea present address: Department of Agricultural Biology National Institute of Agricultural Sciences Wanju 55365 Korea

Development of the functional endodermis of Arabidopsis thaliana roots is controlled, in part, by GRAS transcription factors, namely SHORT-ROOT （SHR）, SCARECROW （SCR）, and SCARECROW-LIKE 23 （SCL23）. Recently, it has been shown that the SHR-SCR-SCL23 regulatory module is also essential for spec- ification of the endodermis （known as the bundle sheath） in leaves. Nevertheless, compared with what is known about the role of the SHR-SCR-SCL23 regulatory network in roots, the molecular interactions of SHR, SCR, and SCL23 are much less understood in shoots. Here, we show that SHR forms protein com- plexes with SCL23 to regulate transcription of SCL23 in shoots, similar to the regulation mode of SCR expression. Our results indicate that SHR acts as master regulator to directly activate the expression of SCR and SCL23. In the SHR-SCR-SCL23 network, we found a previously uncharacterized negative feed- back loop whereby SCL23 modulates SHR levels. Through molecular, genetic, physiological, and morpho- logical analyses, we also reveal that the SHR-SCR-SCL23 module plays a key role in the formation of the endodermis （known as the starch sheath） in hypocotyls. Taken together, our results provide new insights into the regulatory role of the SHR-SCR-SCL23 network in the endodermis development in both roots and shoots.

关键词： endodermis gene regulatory network SHORT-ROOT SCARECROW SCARECROW-LIKE 23,transcription factor

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Ethanolic extract of rice bran: a thermally stable preservative for edible oils and cake

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Food Production, Processing and Nutrition 2022年第1期4卷 183-193页

作者： Kaveesha P.Seneviratne N.V.PAnjali Chathuri M.Senanayake Nimanthi Jayathilaka Kapila N.Seneviratne Department of Chemistry Faculty of ScienceUniversity of KelaniyaKelaniyaSri Lanka present address:Department of Biosystems Technology Faculty of TechnologyUniversity of Sri JayewardenepuraNugegodaSri Lanka

The purpose of this study was to evaluate the thermal stability of the rice bran extract (RBE) and analyze the effect of RBE on the shelf-life of sunflower oil and the quality characteristics and shelf-life of baked cake. The thermal stability of RBE was evaluated by a Rancimat test using sunflower oil. Properties such as moisture content, porosity, crumb density and pore area of cakes baked with RBE and the synthetic antioxidant butylated hydroxytoluene (BHT) were compared. Sensory properties such as taste, aroma, texture, color and overall acceptability of the cake samples were compared using a sensory panel test. The shelf-life of the cakes was evaluated by microbial counts and chemical methods. Thermally treated RBE and BHT for 2 h at 180 °C retained 75% of their initial capacity in protecting sunflower oil while RBE had a significantly higher protection factor (p < 0.05). Cakes baked with RBE received higher scores for taste, color and overall acceptability compared to control or BHT-added cake. BHT-added cake and RBE-added cake exceeded the aerobic plate count (APC) and yeast and mold count (YMC) on days 11 and 13 respectively, while the control cakes without added antioxidants exceeded the APC and YMC on day 7. Both BHT- and RBE-added cakes maintained hexanal levels below 5 mg/kg over 28 days while the control cake exceeded this level on day 21. The results suggest that RBE can be used as a natural food additive to improve the quality and shelf-life of baked foods and edible oils.

关键词： Phenolic antioxidants Food preservatives Sensory properties Shelf-life Rice bran Baked cake Sunflower oil

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Challenging Nanopores with Analyte Scope and Environment

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Journal of Analysis and Testing 2019年第1期3卷 61-79页

作者： Buddini I.Karawdeniya Y.M.Nuwan D.Y.Bandara Jonathan W.Nichols Robert B.Chevalier James T.Hagan Jason R.Dwyer Department of Chemistry University of Rhode IslandRichard E.Beaupre Center for Chemical and Forensic Sciences140 Flagg Rd.KingstonRI 02881USA present address:Department of Mechanical Engineering Lyle School of EngineeringSouthern Methodist UniversityDallasTX 75275USA present address:Nova Biomedical 200 Prospect StreetWalthamMA 02454-9141USA

Nanopores are nanofluidic channels formed through thin membranes that can deliver standout single-molecule and single-particle sensing *** targets include small molecules and nanoparticles,and the DNA,protein,and glycan biopolymers underpinning genomics,proteomics,and ***-notably even in the simplest implementation,resistive-pulse sensing-does not inherently require sample labeling and,thus,offers the potential for general sensing util-ity combined with the prospective benefits of reduced sample processing requirements.A key pursuit for biopolymer sens-ing is the characterization of monomer *** review article will provide an overview of the use of nanopores for general chemical sensing and-omics-related applications,*** broad analyte scope provides fertile ground for a discussion of principles governing nanopore sensing and considerations useful for guiding nanopore *** nanopores to be effective in the face of broad analyte scope,stringent requirements on analytical performance must be met within the particular analyte class without sacrificing the operational flexibility necessary to be responsive across classes presenting very different physical and chemical *** sample-driven challenges provide a unifying framework for discussing aspects of nanopore fabrication,properties,and integration;sensing paradigms,performance,and prospects;fundamental electrokinetic and interfacial phenomena;and practical challenges facing the use and further development of nanopore devices.

关键词： Nanopore Single-molecule sensing Nanofluidics Point-of-care Silicon nitride Resistive pulse Wearable sensors Quality assurance

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Interactions between Axillary Branches of Arabidopsis

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Molecular Plant 2008年第2期1卷 388-400页

作者： Veronica Ongaro Katherine Bainbridge Lisa Williamson Ottoline Leyser Department of Biology University of York PO Box 373--Area 11York YO10 5YW UK present address: Institute of Plant Sciences University of Bern CH-3013 Bern Switzerland

Studies of apical dominance have benefited greatly from two-branch assays in pea and bean, in which the shoot system is trimmed back to leave only two active cotyledonary axillary branches. In these two-branch shoots, a large body of evidence shows that one actively growing branch is able to inhibit the growth of the other, prompting studies on the nature of the inhibitory signals, which are still poorly understood. Here, we describe the establishment of two-branch assays in Arabidopsis, using consecutive branches on the bolting stem. As with the classical studies in pea and bean, these consecutive branches are able to inhibit one another＇s growth. Not only can the upper branch inhibit the lower branch, but also the lower branch can inhibit the upper branch, illustrating the bi-directional action of the inhibitory signals. Using mutants, we show that the inhibition is partially dependent on the MAX pathway and that while the inhibition is clearly transmitted across the stem from the active to the inhibited branch, the vascular connectivity of the two branches is weak, and the MAX pathway is capable of acting unilaterally in the stem.

关键词： shoot branching auxin MAX vascularization.

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