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Metal nutrition and transport in the process of symbiotic nitrogen fixation

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Plant Communications 2024年第4期5卷 36-51页

作者： Yuan Li Qian Liu Dan-Xun Zhang Zhuo-Yan Zhang Ao Xu Yuan-Long Jiang Zhi-Chang Chen Haixia Institute of Science and Technology Fujian Agriculture and Forestry UniversityFuzhou 350002China these authors contributed equally to this article.

Symbiotic nitrogenfixation(SNF)facilitated by the interaction between legumes and rhizobia is a well-documented and eco-friendly alternative to chemical nitrogen *** plants obtainfixed nitrogen from rhizobia by providing carbon and mineral *** mineral nutrients,which are mostly in the form of metal ions,are implicated in various stages of the SNF *** review describes the functional roles played by metal ions in nodule formation and nitrogenfixation and specifically addresses their trans-port mechanisms and associated transporters within root *** research directions and poten-tial strategies for enhancing SNF efficiency are also discussed.

关键词： metal ion transport legume nodule nitrogenfixation

Distant eQTLs and Non-coding Sequences Play Critical Roles in Regulating Gene Expression and Quantitative Trait Variation in Maize

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Molecular Plant 2017年第3期10卷 414-426页

作者： Haijun Liu Xin Luo Luyao Niu Yingjie Xiao Lu Chen Jie Liu Xiaqing Wang Minliang Jin Wenqiang Li Qinghua Zhang Jianbing Yan National Key Laboratory of Crop Genetic Improvement Huazhong Agricultural University Wuhan 430070 China these authors contributed equally to this article

A detailed understanding of genetic architecture of mRNA expression by millions of genetic variants is important for studying quantitative trait variation. In this study, we identified 1.25M SNPs with a minor allele frequency greater than 0.05 by combining reduced genome sequencing （GBS）, high- density array technologies （600K）, and previous deep RNA-sequencing data from 368 diverse inbred lines of maize. The balanced allelic frequencies and distributions in a relatively large and diverse natural panel helped to identify expression quantitative trait loci （eQTLs） associated with more than 18 000 genes （63.4% of tested genes）. We found that distant eQTLs were more frequent （~75% of all eQTLs） across the whole genome. Thirteen novel associated loci affecting maize kernel oil concentration were identified using the new dataset, among which one intergenic locus affected the kernel oil variation by controlling expression of three other known oil-related genes. Altogether, this study provides resources for expanding our understanding of cellular regulatory mechanisms of transcriptome variation and the landscape of functional variants within the maize genome, thereby enhancing the understanding of quantitative variations.

关键词： eQTL RNA-seq GBS GWAS non-coding regulation Zea mays

Actin-depolymerizing factors 8 and 11 promote root hair elongation at high pH

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Plant Communications 2024年第3期5卷 232-247页

作者： Dong Qian Tian Li Chen Zheng Yue Niu Yingzhi Niu Chengying Li Muxuan Wang Yang Yang Lizhe An Yun Xiang Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations School of Life SciencesLanzhou UniversityLanzhou 730000China these authors contributed equally to this article

A root hair is a polarly elongated single-celled structure that derives from a root epidermal cell and func-tions in uptake of water and nutrients from the surrounding *** reports have demon-strated that short periods of high pH inhibit root hair extension;but the effects of long-term high-pH treat-ment on root hair growth are still ***,we report that the duration of root hair elongation is signicantly prolonged with increasing external pH,which counteracts the effect of decreasing root hair elongation rate and ultimately produces longer root hairs,whereas loss of actin-depolymerizing factor 8 and 11(ADF8/11)function causes shortening of root hair length at high pH(pH 7.4).Accumulation of ADF8/11 at the tips of root hairs is inhibited by high pH,and increasing environmental pH affects the actinlament(F-actin)meshwork at the root hair *** high pH,the tip-focused F-actin meshwork is absent in root hairs of the adf8/11 mutant,actinlaments are disordered at the adf8/11 root hair tips,and actin turn-over is *** and recycling vesicles do not aggregate in the apical region of adf8/11 root hairs at high ***,our results suggest that,under long-term exposure to high extracellular pH,ADF8/11 may establish and maintain the tip-focused F-actin meshwork to regulate polar trafcking of secretory/recycling vesicles at the root hair tips,thereby promoting root hair elongation.

关键词： pH ADF actin Rab GTPase vesicle root hair

cis-trans Engineering： Advances and Perspectives on Customized Transcriptional Regulation in Plants

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Molecular Plant 2018年第7期11卷 886-898页

作者： Ankita Shrestha Ahamed Khan Nrisingha Dey Division of Microbial and Plant Biotechnology Institute of Life Sciences Department of Biotechnology Government of India Chandrasekharpur Bhubaneswar Odisha India these authors contributed equally to this article.

Coordinated transcriptional control employing synthetic promoters and transcription factors （TFs） can be used to achieve customized regulation of gene expression in planta. Synthetic promoter technology has yielded a series of promoters with modified cis-regulatory elements that provide useful tools for efficient modulation of gene expression. In addition, the use of zinc fingers （ZFs）, transcription activator-like effectors （TALEs）, and catalytically inactive clustered regularly interspaced short palindromic repeats （CRISPR）-associated protein 9 （dCas9） has made it feasible to engineer TFs that can produce targeted gene expression regulation; these approaches are particularly effective when artificial TFs are coupled with transcriptional activators or repressors. This review focuses on strategies used to engineer both promoters and TFs in the context of targeted transcriptional regulation. We also discuss the creation of synthetic inducible platforms, which can be used to impart stress tolerance to plants. We propose that combinatorial ＂cis-trans engineering＂ using a CRISPR-dCas9-based bipartite module could be used to regulate the expression of multiple target genes. This approach provides an attractive tool for introduction of specific qualitative traits into plants, thus enhancing their overall environmental adaptability.

关键词： cis engineering trans engineering synthetic TFs dCas9 bipartite module

Metabolism, signaling, and transport of jasmonates

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Plant Communications 2021年第5期2卷 78-91页

作者： Mengya Li Guanghui Yu Congli Cao Pei Liu Department of Ecology College of Resources and Environmental SciencesChina Agricultural UniversityBeijing 100193P.R.China these authors contributed equally to this article

Biosynthesis/metabolism,perception/signaling,and transport are three essential aspects of the actions of ***(JAs),including jasmonic acid(JA)and related oxylipins,are implicated in the regulation of a range of ecological interactions,as well as developmental programs to integrate these ***-isoleucine(JA-Ile)is the most bioactive JAs,and perception of JA-Ile by its coreceptor,the Skp1-Cullin1-F-box-type(SCF)protein ubiquitin ligase complex SCF^(COI1)-JAZ,in the nucleus derepresses the transcriptional repression of target *** biosynthesis and metabolism of JAs occur in the plastid,peroxisome,cytosol,endoplasmic reticulum,and vacuole,whereas sensing of JA-Ile levels occurs in the *** is increasingly apparent that a number of transporters,particularly members of the jasmonates transporter(JAT)family,located at endomembranes as well as the plasma membrane,constitute a network for modulating and coordinating the metabolic flux and signaling of *** this review,we discuss recent advances in the metabolism,signaling,and especially the transport of JAs,focusing on intracellular compartmentation of these *** roles of transporter-mediated cell-cell transport in driving long-distance transport and signaling of JAs are also discussed.

关键词： jasmonates metabolism signaling transport cellular compartmentation

Crop Epigenomics： Identifying, Unlocking, and Harnessing Cryptic Variation in Crop Genomes

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Molecular Plant 2015年第6期8卷 860-870页

作者： Lexiang Ji Drexel A. Neumann Robert J. Schmitz Department of Genetics University of Georgia Athens GA 30602 USA Institute of Bioinformatics University of Georgia Athens GA 30602 USA these authors contributed equally to this article.

DNA methylation is a key chromatin modification in plant genomes that is meiotically and mitotically her- itable, and at times is associated with gene expression and morphological variation. Benefiting from the increased availability of high-quality reference genome assemblies and methods to profile single-base res- olution DNA methylation states, DNA methylomes for many crop species are available. These efforts are making it possible to begin answering crucial questions, including understanding the role of DNA methyl- ation in developmental processes, its role in crop species evolution, and whether DNA methylation is dynamically altered and heritable in response to changes in the environment. These genome-wide maps provide evidence for the existence of silent epialleles in plant genomes which, once identified, can be tar- geted for reactivation leading to phenotypic variation.

关键词： epigenomics DNA methylation whole-genome bisulfite sequencing (WGBS) crops comparativegenomics

From Golden Rice to aSTARice:Bioengineering Astaxanthin Biosynthesis in Rice Endosperm

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Molecular Plant 2018年第12期11卷 1440-1448页

作者： Qinlong Zhu Dongchang Zeng Suize Yu Chaojun Cui Jiamin Li Heying Li Junyu Chen Runzhao Zhang Xiucai Zhao Letian Chen Yao-Guang Liu State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources College of Life Sciences South China Agricultural University Guangzhou 510642 China these authors contributed equally to this article

Carotenoids are important phytonutrients with antioxidant properties,and are widely used in foods and feedstuffs as ***,a red-colored ketocarotenoid,has strong antioxidant activity and thus can benefit human ***,astaxanthin is not produced in most higher *** we report the bioengineering of astaxanthin biosynthesis in rice endosperm by introducing four synthetic genes,sZmPSY1,sPaCrtl,sCrBKT,and sHpBHY,which encode the enzymes phytoene synthase,phytoene desaturase,β-carotene ketolase,and β-carotene hydroxylase,*** overexpression of two (sZmPSY1 and sPaCrtl),three (sZmPSY1,sPaCrtl and sCrBKT),and all these four genes driven by rice endosperm-specific promoters established the Carotenoid/ketocarotenoid/astaxanthin biosynthetic pathways in the endosperm and thus resulted in various types of germplasm,from the yellow-grained β-caro- tene-enriched Golden Rice to orange-red-grained Canthaxanthin Rice and Astaxanthin Rice,respectively. Grains Of Astaxanthin Rice were enriched with astaxanthin in the endosperm and had higher antioxidant *** results proved that introduction of a minimal set of four transgenes enables de novo biosynthesis of astaxanthin in therice *** work provides a Successful example for synthetic biology in plants and biofortification in crops;the biofortified rice products generated by this study could be consumed as health-promoting foods and processed tO produce dietary supplements.

关键词： biofortification multigene metabolic engineering astaxanthin biosynthesis rice endosperm

Jasmonic Acid Oxidase 2 Hydroxylates Jasmonic Acid and Represses Basal Defense and Resistance Responses against Botrytis cinerea Infection

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Molecular Plant 2017年第9期10卷 1159-1173页

作者： Ekaterina Smirnova Laboratoire de Chimie Organique Synthétique Institut de Chimie Université de Strasbourg CNRS Strasbourg France [∗]Corresponding authorthese authors contributed equally to this article.

Jasmonates （JAs） orchestrate immune responses upon wound/herbivore injury or infection by necrotro- phic pathogens. Elucidation of catabolic routes has revealed new complexity in jasmonate metabolism. Two integrated pathways attenuate signaling by turning over the active hormone jasmonoyl-isoleucine （JA-Ile） through w-oxidation or deconjugation, and define an indirect route forming the derivative 12OH-JA. Here, we provide evidence for a second 12OH-JA formation pathway by direct jasmonic acid （JA） oxidation. Three jasmonic acid oxidases （JAOs） of the 2-oxoglutarate dioxygenase family catalyze spe- cific oxidation of JA to 12OH-JA, and their genes are induced by wounding or infection by the fungus Botrytis cinerea. JA02 exhibits the highest basal expression, and its deficiency in jao2 mutants strongly enhanced antifungal resistance. The resistance phenotype resulted from constitutive expression of antimi- crobial markers rather than from their higher induction in infected jao2 plants and could be reversed by ectopic expression of any of the three JAOs injao2. Elevated defense injao2 was dependent on the activity of JASMONATE RESPONSE 1 （JAR1） and CORONATINE-INSENSITIVE 1 （COI1） but was not correlated with erihanced JA-Ile accumulation. Instead, jao2 mutant lines displayed altered accumulation of several JA species in healthy and challenged plants, suggesting elevated metabolic flux through JA-Ile. Collectively, these data identify the missing enzymes hydroxylating JA and uncover an important metabolic diversion mechanism for repressing basal JA defense responses.

关键词： 2-oxoglutarate oxygenase jasmonic acid defense regulation hormone metabolism Botrytis

The CUL3A–LFH1–UBC15 ubiquitin ligase complex mediates SHORT VEGETATIVE PHASE degradation to accelerate flowering at high ambient temperature

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Plant Communications 2024年第4期5卷 224-238页

作者： Suhyun Jin Geummin Youn Sun Young Kim Taewook Kang Hyun-young Shin Ji-Yul Jung Pil Joon Seo Ji Hoon Ahn Department of Life Sciences Korea UniversitySeoul 02841Republic of Korea Department of Chemistry Seoul National UniversitySeoul 08826Republic of Korea these authors contributed equally to this article.

Ambient temperature affects flowering time in plants,and the MADS-box transcription factor SHORT VEGETATIVE PHASE(SVP)plays a crucial role in the response to changes in ambient *** protein stability is regulated by the 26S proteasome pathway and decreases at high ambient temperature,but the details of SVP degradation are ***,we show that SVP degradation at high ambient temperature is mediated by the CULLIN3–RING E3 ubiquitin ligase(CRL3)complex in Arabidopsis *** identified a previously uncharacterized protein that interacts with SVP at high ambient temperature and contains a BTB/POZ *** named this protein LATE FLOWERING AT HIGH TEMPERATURE 1(LFH1).Single mutants of LFH1 or CULLIN3A(CUL3A)showed late flowering specifically at 27***1 protein levels increased at high ambient *** found that LFH1 interacts with CUL3A in the cytoplasm and is important for SVP–CUL3A complex *** in CUL3A and/or LFH1 led to increased SVP protein stability at high ambient temperature,suggesting that the CUL3–LFH1 complex functions in SVP *** E2 ubiquitin-conjugating enzymes(UBCs)using RING-BOX PROTEIN 1(RBX1),a component of the CRL3 complex,as bait identified ***15 mutants also showed late flowering at high ambient *** vitro and in vivo ubiquitination assays using recombinant CUL3A,LFH1,RBX1,and UBC15 showed that SVP is highly ubiquitinated in an ATP-dependent ***,these results indicate that the degradation of SVP at high ambient temperature is mediated by a CRL3 complex comprising CUL3A,LFH1,and UBC15.

关键词： temperature-responsive flowering SVP CUL3 proteasomal degradation ubiquitination