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Genetic analysis and candidate gene identification of salt tolerancerelated traits in maize

Journal of Integrative Agriculture 2024年第7期23卷 2196-2210页

作者： Hui Fang Xiuyi Fu Hanqiu Ge Mengxue Jia Jie Ji Yizhou Zhao Zijian Qu Ziqian Cui Aixia Zhang Yuandong Wang Ping Li Baohua Wang Scientific Observing and Experimental station of Maize in Plain Area of southern Region Ministry of Agriculture and Rural Affairs/School of Life SciencesNantong UniversityNantong 226019China Maize research institute Beijing Academy of Agriculture and Forestry Sciences(BAAFS)Beijing 100097China

Soil salinization poses a threat to maize production worldwide,but the genetic mechanism of salt tolerance in maize is not well ***,identifying the genetic components underlying salt tolerance in maize is of great *** the current study,a teosinte-maize BC2F7 population was used to investigate the genetic basis of 21 salt tolerance-related *** total,125 QTLs were detected using a high-density genetic bin map,with one to five QTLs explaining 6.05–32.02%of the phenotypic variation for each *** total phenotypic variation explained(PVE)by all detected QTLs ranged from 6.84 to 63.88%for each *** all 125 QTLs,only three were major QTLs distributed in two genomic regions on chromosome 6,which were involved in three salt tolerance-related *** addition,10 pairs of epistatic QTLs with additive effects were detected for eight traits,explaining 0.9 to 4.44%of the phenotypic ***,18 QTL hotspots affecting 3–7 traits were *** one hotspot(L5),a gene cluster consisting of four genes(ZmNSA1,SAG6,ZmCLCg,and ZmHKT1;2)was found,suggesting the involvement of multiple pleiotropic ***,two important candidate genes,Zm00001d002090 and Zm00001d002391,were found to be associated with salt tolerance-related traits by a combination of linkage and marker-trait association ***00001d002090 encodes a calcium-dependent lipid-binding(CaLB domain)family protein,which may function as a Ca^(2+)sensor for transmitting the salt stress signal downstream,while Zm00001d002391 encodes a ubiquitin-specific protease belonging to the C19-related *** findings provide valuable insights into the genetic basis of salt tolerance-related traits in maize and a theoretical foundation for breeders to develop enhanced salt-tolerant maize varieties.

关键词： maize salt tolerance-related traits QTL mapping region-based association analysis

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Seismicity changes and numerical simulation of coseismic deformation following the 2022 M_(s)6.8 Luding earthquake in Sichuan,China

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Science China Earth Sciences 2024年第8期67卷 2507-2521页

作者： Qiu MENG Zitao WANG Huai ZHANG Key Laboratory of Computational Geodynamics of Chinese Academy of Sciences College of Earth and Planetary SciencesUniversity of Chinese Academy of SciencesBeijing 100049China institute of Earthquake Forecasting China Earthquake AdministrationBeijing 100036China southern Marine Science and Engineering Guangdong Laboratory(Zhuhai) Zhuhai 519080China Beijing Yanshan Earth Critical Zone national research station Beijing 101408China

The Xianshuihe fault is a major tectonic boundary between the Sichuan-Yunnan rhombic and Bayanhar blocks in Southwest *** an average left-lateral strike-slip movement of 10–15 mm/yr,it is a fast-moving strike-slip continental *** September 5,2022,the Ms6.8 Luding earthquake occurred along the Moxi segment of the Xianshuihe fault,reaching a maximum intensity of IX and resulting in a significant number of casualties and severe property *** earthquake broke the long-standing seismic quiescence of the Xianshuihe fault,which lasted for more than 40 years,and was followed by a significant number of *** outstanding question is how the behavior of the Xianshuihe fault and major earthquakes changed following this *** this study,we examined the changes in regional seismicity following the Luding earthquake and identified the potential for future strong earthquakes along the Xianshuihe *** used a finite element numerical method to simulate the environment of the seismogenic fault and its adjacent *** addition,we used the coseismic slip model of the Luding earthquake with the split-node method to calculate how the stress and strain fields in the surrounding area were affected by the2022 *** stress changes were resolved in the main faults,and the seismicity of adjacent faults was analyzed in conjunction with the observed seismic *** results indicate that regional tectonic movement primarily occurred to the southeast along the Moxi *** stress field is approximately north-south in tension and east-west in *** in the stress field in the epicentral region of the Luding earthquake exceeded 1 *** maximum displacement of the coseismic deformation field was concentrated between Moxi town and Tuanjie village,and the Coulomb stress of the fault zone in this region experienced the largest ***,the b-value of the Gutenberg-Richter magnitude-frequency relationship at the epicenter a

关键词： Luding earthquake Seismicity Coulomb failure stress change Finite element numerical simulation

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Longitudinal dependence of the forecast accuracy of the ionospheric total electron content in the equatorial zone

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Geodesy and Geodynamics 2024年第5期15卷 528-541页

作者： Artem Kharakhashyan Olga Maltseva institute for Physics Southern Federal University344090Russia

The longitudinal dependence of the behavior of ionospheric parameters has been the subject of a number of works where significant variations are *** also applies to the prediction of the ionospheric total electron content(TEC),which neural network methods have recently been widely ***,the results are mainly presented for a limited set of *** paper examines the longitudinal dependence of the TEC forecast accuracy in the equatorial *** this case,the methods are used that provided the best accuracy on three meridians:European(30°E),Southeastern(110°E)and American(75°W).Results for the stations considered are analyzed as a function of longitude using the Jet Propulsion Laboratory Global Ionosphere Map(JPL GIM)for *** results are for 2 h ahead and 24 h ahead *** was found that in this case,based on the metric values,three groups of architectures can be *** first group included long short-term memory(LSTM),gated recurrent unit(GRU),and temporal convolutional networks(TCN)models as a part of unidirectional deep learning models;the second group is based on the recurrent models from the first group,which were supplemented with a bidirectional algorithm,increasing the TEC forecasting accuracy by 2-3 *** third group,which includes the bidirectional TCN architecture(BiTCN),provided the highest *** this architecture,according to data obtained for 9 equatorial stations,practical independence of the TEC prediction accuracy from longitude was observed under the following metrics(Mean Absolute Error MAE,Root Mean Square Error RMSE,Mean Absolute Percentage Error MAPE):MAE(2 h)is 0.2 TECU approximately;MAE(24 h)is 0.4 TECU approximately;RMSE(2 h)is less than 0.5 TECU except Niue station(RMSE(2 h)is 1 TECU approximately);RMSE(24 h)is in the range of 1.0-1.7 TECU;MAPE(2 h)station,MAPE(24 h)stations that formed latitudinal chains in the

关键词： Ionosphere Total electron content Forecasting BiGRU BiLSTM BiTCN Temporal convolution

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Aqueous-phase formation of N-containing secondary organic compounds affected by the ionic strength

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Journal of Environmental Sciences 2024年第4期138卷 88-101页

作者： Yuqi Gan Xiaohui Lu Shaodong Chen Xinghua Jiang Shanye Yang Xiewen Ma Mei Li Fan Yang Yewen Shi Xiaofei Wang Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention Department of Environmental Science and EngineeringFudan UniversityShanghai 200433China Shanghai institute of Pollution Control and Ecological Security Shanghai 200092China Guangdong Provincial Observation and research station for Coastal Atmosphere and Climate of the Great Bay Area Southern University of Science and TechnologyShenzhen 518055China institute of Mass Spectrometry and Atmospheric Environment Guangdong Provincial Engineering Research Center for On-line Source Apportionment System of Air PollutionJinan UniversityGuangzhouChina Environmental Monitoring station of Pudong New District Shanghai 201200China Shanghai Municipal Center for Disease Control&Prevention Shanghai 200336China

The reaction of carbonyl-to-imine/hemiaminal conversion in the atmospheric aqueous phase is a critical pathway to produce the light-absorbing N-containing secondary organic compounds(SOC).The formation mechanism of these compounds has been wildly investigated in bulk solutions with a low ionic ***,the ionic strength in the aqueous phase of the polluted atmosphere may be *** is still unclear whether and to what extent the inorganic ions can affect the SOC *** we prepared the bulk solution with certain ionic strength,in which glyoxal and ammonium were mixed to mimic the aqueous-phase *** characterization by High-resolution Mass Spectrometry was performed to identify the N-containing products,and the light absorption of the mixtures was measured by ultraviolet-visible ***-nine N-containing compounds were identified and divided into four categories(N-heterocyclic chromophores,high-molecular-weight compounds with N-heterocycle,aliphatic imines/hemiaminals,and the unclassified).It was observed that the longer reaction time and higher ionic strength led to the formation of more N-heterocyclic chromophores and the increasing of the lightabsorbance of the *** added inorganic ions were proposed to make the aqueous phase somewhat viscous so that the molecules were prone to undergo consecutive and intramolecular reactions to form the *** general,this study revealed that the enhanced ionic strength and prolonged reaction time had the promotion effect on the lightabsorbing SOC *** implies that the aldehyde-derived aqueous-phase SOC would contribute more light-absorbing particulate matter in the industrial or populated area where inorganic ions are abundant.

关键词： Ionic strength Carbonyl-to-imine/hemiaminal Heterocyclic Brown carbon Mass spectrometry Aqueous-phase reaction

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Summer Atmospheric Water Cycle under the Transition Influence of the Westerly and Summer Monsoon over the Yarlung Zangbo River Basin in the southern Tibetan Plateau

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Advances in Atmospheric Sciences 2024年第5期41卷 830-846页

作者： Qianhui MA Chunyan ZHANG Donghai WANG Zihao PANG School of Atmospheric Sciences Sun Yat-sen UniversityGuangdong Province Key Laboratory for Climate Change and Natural Disaster StudiesKey Laboratory of Tropical Atmosphere-Ocean SystemMinistry of EducationZhuhai 519082China southern Marine Science and Engineering Guangdong Laboratory(Zhuhai) Zhuhai 519082China Guangdong Meteorological Data Center Guangdong Meteorological ServiceGuangzhou 510080China national Observation and research station of Coastal Ecological Environments in Macao Macao Environmental Research InstituteMacao University of Science and TechnologyMacao SAR 999078China national Meteorological Information Center China Meteorological AdministrationBeijing 100081China

This study compares the summer atmospheric water cycle,including moisture sources and consumption,in the upstream,midstream,and downstream regions of the Yarlung Zangbo River Basin in the southern Tibetan *** evolutions of moisture properties under the influence of the westerly and summer southerly monsoon are examined using 5-yr multi-source measurements and ERA5 reanalysis *** that moisture consumption in this study is associated with clouds,precipitation,and diabatic *** to the midstream and downstream regions,the upstream region has less moisture,clouds,and precipitation,where the moisture is brought by the *** early August,the vertical wet advection over this region becomes enhanced and generates more high clouds and *** midstream region has moisture carried by the westerly in June and by the southerly monsoon from July to *** higher vertical wet advection maximum here forms more high clouds,with a precipitation peak in early *** downstream region is mainly affected by the southerly-driven wet *** rich moisture and strong vertical wet advection here produce the most clouds and precipitation among the three regions,with a precipitation peak in late *** height of the maximum moisture condensation is different between the midstream region(325 hPa)and the other two regions(375 hPa),due to the higher upward motion maximum in the midstream *** diabatic heating structures show that stratiform clouds dominate the upstream region,stratiform clouds and deep convection co-exist in the midstream region,and deep convection systems characterize the downstream region.

关键词： Yarlung Zangbo River Basin atmospheric water cycle constrained variational analysis moisture source and consumption

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Validating the use of ROS-scavenging bacteria as probiotics to increase coral resilience to thermal stress

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Journal of Oceanology and Limnology 2024年第4期42卷 1242-1260页

作者： Xiaoyu TANG Qingsong YANG Ying ZHANG Hanzhang WANG Juan LING Haiyan SUN Junde DONG Yanying ZHANG CAS Key Laboratory of Tropical Marine Bio-resources and Ecology South China Sea Institute of Oceanology(SCSIO)Guangzhou 510301China Ocean School Yantai UniversityYantai 264005China southern Marine Science and Engineering Guangdong Laboratory(Guangzhou) Guangzhou 511458China Sanya national Marine Ecosystem research station and Key Laboratory of Tropical Marine Biotechnology of Hainan Province Sanya Institute of OceanologySCSIOSanya 572000China institute of Deep-sea Science and Engineering Chinese Academy of SciencesSanya 572000China University of Chinese Academy of Sciences Beijing 100049China

Thermal stress causes the overproduction and toxic accumulation of reactive oxygen species(ROS),which seems to be correlated with coral bleaching and,ultimately,*** reduction of ROS concentration within the coral holobiont could minimize the effects of thermal stress and support efforts to reduce coral decline *** the current study,we explored the physiological responses of Pocillopora damicornis to ROS-scavenging bacteria inoculation as well as the microbiome restructuring that correlates with ***’s resilience to thermal stress after probiotic *** of corals with ROS-scavenging bacteria enhanced coral health and reduced ROS ***,the enhanced coral thermal resistance promoted by ROS-scavenging bacteria was also correlated with an overall coral microbiome *** addition,the complex network relationships between bacteria and Symbiodiniaceae in corals after ROS-scavenging bacteria inoculation contributed to corals’resilience to high ***,coral heat tolerance bacterial biomarkers,such as Myxococcota,were enriched in corals with added ROS-scavenging ***,our findings validate the selected ROS-scavenging bacteria as coral probiotics that could help corals resist thermal stress on a short ***,our data contribute to our understanding of the potential interactions between different members of the coral holobiont and the use of probiotics as tools to aid coral restoration efforts.

关键词： coral beneficial microorganisms for corals(BMCs) Symbiodiniaceae thermal stress coral bleaching

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Identification of stable internal control genes for accurate normalization of real-time quantitative PCR data in testicular tissue from two breeds of cattle

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Asian pacific Journal of Reproduction 2020年第5期9卷 247-255页

作者： Pradeep Nag Ankur Sharma Elango Kamaraj Arumugam Kumaresan Tirtha Kumar Datta Ayyasamy Manimaran Nilendu Paul Sakthivel Jeyakumar Kerekoppa P.Ramesha Theriogenology Laboratory Veterinary Gynaecologyand ObstetricsSouthern Regional Station of ICAR-National Dairy Research InstituteBengaluru–560030 KarnatakaIndia Animal Genomics Laboratory ICAR-National Dairy Research InstituteKarnal–132001 HaryanaIndia southern regional station of icar-national dairy research institute Bengaluru–560030 KarnatakaIndia

Objective:To assess the stability of 10 candidate internal control genes(ICGs),namely GAPDH,ACTB,RPL23,RPS15A,ATPSF1,GLUT5,HMBS,ATP2B4,PPIA,and BRP to normalize the transcriptional data from testes samples of Zebu and crossbred ***:Total RNA was isolated from testicular tissue of Zebu and crossbred bulls(n=6 each)between 2-8 years of *** was synthesized,and the quantitative real-time polymerase chain reaction(PCR)was *** cycle threshold values were used for the analysis of the stability of *** different statistical algorithms:geNorm,Normfinder,BestKeeper,and RefFinder,were used to assess the stability of these ***:ATPSF1,HMBS,PPIA,and RPS15A were the most reliable and stable ICGs for Zebu testes,and ATPSF1,RPL23,and PPIA for crossbred ***:A panel of stable ICGs(ATPSF1,HMBS,PPIA,RPS15A for Zebu and ATPSF1,RPL23,and PPIA for crossbred)for normalization of gene expression data in testes samples can be helpful for researchers to conduct functional genomics studies at the testicular level in cattle bulls.

关键词： Cattle bulls Gene expression Internal control genes Normalization qPCR Testis

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Seismic and geological evidence of hidden faults in the Yinpan Reservoir area based on a dense seismic array

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Science China Earth Sciences 2024年第7期67卷 2401-2407页

作者： Guangyao YIN Huai ZHANG Liwen GONG Q ipeng BAI Yicun GUO Bing ZHANG Yaolin SHI Key Laboratoryof Earth System Numerical Modeling and Application(Chinese Academyof Sciences) College of Earth and Planetary SciencesUniversity of Chinese Academy of SciencesBeijing 100049China Key Laboratory of Computational Geodynamics Chinese Academy of SciencesBeijing 100049China southern Marine Science and Engineering Guangdong Laboratory(Zhuhai) Zhuhai 519080China Beijing Yanshan Critical Zone national Field Scientific Observation and research station Beijing 101408China Chongqing Earthquake Agency Chongqing 401147 China institute of Earthquake Forecasting China Earthquake AdministrationBeijing 100036China Hangzhou Applied Acoustics research institute Hangzhou 311100China State Key Laboratory of Geodesy and Earths Dynamics Innovation Academy for Precision Measurement Science and TechnologyCASWuhan 430077China

*** November 23,2017,an M_(S)5.0 earthquake occurred in Wulong,Chongqing,China,resulting in tens of casualties and considerable economic ***,the epicenter of this earthquake was located in the transition zone from the... 详细信息

关键词： earthquake southeast seismic

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An integrated north–south paleo-Dadu-Anning River: New insights from bulk major and trace element analyses of the Xigeda Formation

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China Geology 2024年第1期7卷 91-103页

作者： Yong Zheng Hai-bing Li Jia-wei Pan Ping Wang Ya Lai Zheng Gong Key Laboratory of Deep-Earth Dynamics Institute of GeologyChinese Academy of Geological SciencesChina Geological SurveyMinistry of Natural ResourcesBeijing 100037China Jiangsu Donghai Continental Deep Hole Crustal Activity national Observaion and research station Lianyungang 222300China southern Marine Science and Engineering Guangdong Laboratory Guangzhou 511458China Geophysical Exploration Center China Earthquake AdministrationZhengzhou 450002China institute of Geophysics China Earthquake AdministrationBeijing 100081China

The Xianshuihe-Anninghe fault extends SE–S and constitutes the southeastern margin of the Tibetan ***,the Dadu River which is associated with the fault does not flow following the path,but makes a 90ºturn within a distance of 1 km at Shimian,heading east,and joins the Yangtze River,finally flowing into the East China *** to the abrupt turn,a low and wide pass near the Daqiao reservoir at Mianning separates the N–S course of the Dadu River from the headwater of the Anning River which then flows south into the Yunnan Province along the Anninghe ***,many previous studies assumed southward flow of the paleo-Dadu River from the Shimian to the Anning ***,evidences for the capture of the integrated N–S paleo-Dadu-Anning River,its timing,and causes are still *** study explored the paleo-drainage pattern of the Dadu and Anning Rivers based on bulk mineral and geochemical analyses of the large quantities of fluvial/lacustrine sediments along the trunk of the Dadu and Anning *** with sands in the modern Dadu River,the Xigeda sediments also exhibit a granitoid affinity with the bulk major mineral compositions of quartz(>50%),anorthite(about 10%),orthoclase(about 5%),muscovite(about 5%),and clinochlore(about 4%).Correspondingly,bulk major elements show high SiO_(2),with all samples>60%,and some of them>70%,low TiO_(2)(≤0.75%),P_(2)O_(5)(≤0.55%),FeO*(≤5%),and relatively high CaO(1.02%–8.51%),Na_(2)O(1.60%–2.52%),and K_(2)O(2.17%–2.71%),with a uniform REE ***,synthesizing all these results indicate that these lacustrine sediments have similar material sources,which are mainly derived from its course in the Songpan-Ganzi flysch block,implying that the paleo-Dadu originally flowed southward into the Anning River and provided materials to the Xigeda ancient *** rearrangement of the paleo-Dadu River appears to be closely related to the locally focused uplift driven by strong activities of the Xians

关键词： Dadu River Anninghe fault River diversion Xigeda Formation Tectonic uplift Provenance Songpan-Ganzi flysch Ancient lake Xianshuihe-Xiaojiang fault system Tibetan Plateau

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Identification of the non-stationarity of extreme temperature events and teleconnections with solar activity and large-scale atmospheric circulation: A case study in the Yangtze River Economic Belt

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Journal of Earth Science 2024年

作者： Lin Zhang Jingyun Ling Shengzhi Huang Hongbin Zhan Yi Wu Menggui Jin Qiang Huang State Key Laboratory of Eco-hydraulics in Northwest Arid Region， Xi'an University of Technology College of Design and Engineering， national University of Singapore Yinshanbeilu Grassland Eco-Hydrology national Observation and research station， China institute of Water Resources and Hydropower research Department of Geology and Geophysics， Texas A&M University， College station School of Earth System Science， Tianjin University School of Environmental Studies， China University of Geosciences

In recent decades， extreme climate events have become a major problem worldwide. To understand the uncertainty in the response of extreme events to global warming， regional assessments are required for various climatic and geographic regions. The spatiotemporal distribution of extreme temperature events in the Yangtze River Economic Belt (YREB) from 1960 to 2019， including interannual changes and their teleconnections with solar activity and large-scale atmospheric circulation， were analyzed using eight indices of extreme temperature events. Over the past six decades， the climate in the YREB region has seen a warming trend， characterized by an increase in extreme warm events and a decrease in extreme cold events. The extreme temperature indices exhibit strong spatial variability. The warm extremes display a significant upward trend across the YREB， while cold extremes are primarily concentrated in the western part of the region. In recent decades， both warm and cold extremes have significant interannual variations， and these events predominantly oscillate over periods of less than four years. After 1985， the relationship between El Ni?o-southern Oscillation (ENSO)， Arctic Oscillation (AO)， Pacific Decadal Oscillation (PDO) and extreme temperature events has changed significantly compared with pre-1985， and the direction of the phase angle can determine the positive and negative effects of the two time-series. ENSO， AO and PDO mainly have positive impacts on extreme temperature events， with ENSO and AO exerting greater impacts than PDO. In contrast， solar activity mainly has a negative impact on these events. Furthermore， the notable interdecadal changes in extreme temperature events， especially warm extremes， may be caused by the shift in the PDO phase. Therefore， the results of the study are important for the YREB region to take effective measures to mitigate the potential impacts of human activities on regional warming.

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