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Highly divergent sympatric lineages of Leptotila verreauxi(Aves:Columbidae)suggest a secondary contact area in the Isthmus of Tehuantepec,Mexico

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Avian Research 2024年第1期15卷 12-21页

作者： Orlando J.Espinosa-Chávez Adolfo G.Navarro-Sigüenza Hernando Rodríguez-Correa Luis A.Sánchez-González Museo de Zoología“Alfonso L.Herrera” Depto.de Biología EvolutivaFacultad de CienciasUniversidad Nacional Autonoma de MexicoApdo.Postal 70-399CP 04510Ciudad de MexicoMexico posgrado en Ciencias Biologicas Unidad de PosgradoEdificio D1◦PisoCircuito de PosgradosCiudad UniversitariaUniversidad Nacional Autonoma de MexicoCoyoacanCP 04510CDMXMexico Escuela Nacional de Estudios Superiores Unidad Morelia Universidad Nacional Autonoma de Mexico.Antigua Carretera a Patzcuaro No.8701 Col.Ex Hacienda de San Jose de la HuertaC.P.58190MoreliaMichoacanMexico

Due to a complex geological and biotic history,the Isthmus of Tehuantepec(IT),has been long recognized as a driver for the evolutionary divergence of numerous lowland and highland taxa.Widely distributed in the lowlands of the American continent,the White-Tipped Dove(Leptotila verreauxi)is a polytypic species with 13 recognized subspecies.Four of these have been recorded in Mexico,and the distribution of three abuts at the IT,suggesting a contact zone.To estimate phylogenetic patterns,divergence times and genetic differentiation,we examined two mt DNA(ND2 and COI)and one n DNA(β-fibint 7)markers.We also used correlative ecological niche models(enM)to assess whether ecological differences across the IT may have acted as a biogeographical boundary.We estimated paleodistributions during the Middle Holocene,Last Glacial Maximum and Last Interglacial,to evaluate the influence of climate changes on the distribution and demographic changes.Our results showed genetically distinct lineages that diverged approximately 2.5 million years ago.Climatic and ecological factors may have played a dual role in promoting differentiation,but also in the formation of a secondary contact zone in the southern IT.Our ecological niche comparisons indicated that the ecological niche of sympatric lineages at the IT are not identical,suggesting niches divergence;in addition,environmental niche models across the region indicated no abrupt biogeographic barriers,but the presence of regions with low suitability.These results suggest that genetic differentiation originated by a vicariant event probably related to environmental factors,favored the evolution of different ecological niches.Also,the absence of a biogeographic barrier but the presence of less suitable areas in the contact regions,suggest that secondary contact zones may be also maintained by climatic factors for the eastern group,but also by biotic interactions for the western group.

关键词： Biogeographical boundary Humid and dry forests Isthmus of Tehuantepec Phylogeography Secondary contact

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Breaking paradigms: Long non-coding RNAs forming gene fusions with potential implications in cancer

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Genes & Diseases 2024年第3期11卷 311-323页

作者： David Sanchez-Marin Macrina Beatriz Silva-Cazares Fany Iris Porras-Reyes Rebeca Garcia-Roman Alma D.Campos-Parra posgrado en Ciencias Biologicas Facultad de MedicinaUniversidad Nacional Autonoma de MexicoCiudad de MexicoC.P.04360Mexico Unidad Academica Multidisciplinaria Region Altiplano Universidad Autonoma de San Luis Potost(UASLP)Carretera a Cedral Km 5+600Ejido San Jose de la TrojesMatehualaSan Luis PotosiC.P.78760Mexico Servicio de Anatomia Patologica Instituto Nacional de Cancerologia(INCan)Nino JesuisTlalpanCiudaddeMexicoC.P.14080Mexico Instituto de Salud Publica Universidad Veracruzana(UV)Av.Dr LuisDr.Castelazo Ayala s/nCol.Industrial AnimasXalapaVeracruzC.P.91190Mexico

Long non-coding RNAs(lncRNAs)are non-coding RNAs longer than 200 nucleotides with dynamic regulatory functions.They interact with a wide range of molecules such as DNA,RNA,and proteins to modulate diverse cellular functions through several mechanisms and,if deregulated,they can lead to cancer development and progression.Recently,it has been described that IncRNAs are susceptible to form gene fusions with mRNAs or other IncRNAs,breaking the paradigm of gene fusions consisting mainly of protein-coding genes.However,their biological significance in the tumor phenotype is still uncertain.Therefore,their recent identification opens a new line of research to study their biological role in tumor-igenesis,and their potential as biomarkers with clinical relevance or as therapeutic targets.The present study aimed to review the IncRNA fusions identified so far and to know which of them have been associated with a potential function.We address the current challenges to deepen their study as well as the reasons why they represent a future therapeutic window incancer.

关键词： Cancer Genefusions IncRNAs ncRNAs Therapy

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Deregulation of interferon-gamma receptor 1 expression and its implications for lung adenocarcinoma progression

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World Journal of Clinical Oncology 2024年第2期15卷 195-207页

作者： Angeles C Tecalco-Cruz Karen H Medina-Abreu enrique Oropeza-Martínez Jesus Zepeda-Cervantes AleidaVázquez-Macías Marina Macías-Silva posgrado en Ciencias Genómicas Universidad Autónoma de la Ciudad de MéxicoCDMX 03100Mexico Facultad de Medicina Veterinaria y Zootecnia Universidad Nacional Autónoma de MéxicoCDMX 04510Mexico Colegio de Ciencias y Humanidades Universidad Autónoma de la Ciudad de MéxicoCDMX 03100Mexico Instituo de Fisiología Celular Universidad Nacional Autónoma de MéxicoCDMX 04510Mexico

Interferon-gamma(IFN-γ)plays a dual role in cancer;it is both a pro-and an antitumorigenic cytokine,depending on the type of cancer.The deregulation of the IFN-γcanonic pathway is associated with several disorders,including vulner-ability to viral infections,inflammation,and cancer progression.In particular,the interplay between lung adenocarcinoma(LUAD)and viral infections appears to exist in association with the deregulation of IFN-γsignaling.In this mini-review,we investigated the status of the IFN-γsignaling pathway and the expression level of its components in LUAD.Interestingly,a reduction in IFNGR1 expression seems to be associated with LUAD progression,affecting defenses against viruses such as severe acute respiratory syndrome coronavirus 2.In addition,alterations in the expression of IFNGR1 may inhibit the antiproliferative action of IFN-γsignaling in LUAD.

关键词： Interferon-gamma IFNGR1 JAK1 Antiviral Anti-tumor Lung adenocarcinoma

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Plumbing System of Hunga Tonga Hunga Ha'apai Volcano

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Journal of Earth Science 2023年第3期34卷 706-716页

作者： Román Alvarez Miguel Camacho Instituto de Investigaciones en Matemáticas Aplicadas y en Sistemas(IIMAS) Universidad Nacional Autónoma de MéxicoCoyoacán CDMX 04510Mexico posgrado en Ciencias de la Tierra Universidad Nacional Autónoma de MéxicoCoyoacán CDMX 04510Mexico

The Hunga Tonga Hunga Ha’apai submarine volcano has experienced repeated eruptions in the latest decades.The recent one,in January 2022,released an enormous amount of energy inducing global perturbations,as tsunamis and atmospheric waves.The structure of the volcano is poorly understood,especially its internal structure.Deep-seated magmatic connections are difficult to define or visualize.We use a high-resolution gravity data set obtained via satellite to calculate the Bouguer anomaly over its structure,to perform a preliminary exploration of its interior.Executing 3D gravity inversions,we find a complex plumbing system with various exhaust trajectories and multiple surface pockets of low-density material within the volcanic edifice;some appear to be associated with ring fractures.This is in line with the report of the 2009 eruption,described as beginning from multiple vents.We found no signs of a magma chamber within 6 km depth,although several volcanic conduits are identified from such depth to the surface.Density variations occur within a plumbing conduit or may vary from one conduit to another in the same volcano.These models yield quantitative estimates for areas of magma-water interaction,constituting a baseline to compare with structural changes to be induced in future eruptions.

关键词： Hunga Tonga Hunga Ha'apai satellite gravity data 3D inversions volcano Tofua Island

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紫茎泽兰入侵前后根部蜡样芽孢杆菌含量比较及其对化感物质处理的响应

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生物安全学报 2022年第1期31卷 27-33页

作者：赵云鹏杨子豪徐刚 Esteban Rodríguez-Leyva 杨国庆扬州大学园艺与植物保护学院江苏扬州225009 posgrado en fitosanidad Entomología y AcarologíaColegio de PostgraduadosTexcocoMexico

【目的】比较紫茎泽兰入侵地种群根部有益菌蜡样芽孢杆菌含量与原产地种群的差异,及其对化感物质的响应,为揭示紫茎泽兰与有益菌互作在入侵前后的变化及其机制提供参考。【方法】分别以紫茎泽兰原产地墨西哥的3个种群(M1、M2、M3)和入... 详细信息

【目的】比较紫茎泽兰入侵地种群根部有益菌蜡样芽孢杆菌含量与原产地种群的差异,及其对化感物质的响应,为揭示紫茎泽兰与有益菌互作在入侵前后的变化及其机制提供参考。【方法】分别以紫茎泽兰原产地墨西哥的3个种群(M1、M2、M3)和入侵地云南的3个种群(C1、C2、C3)为材料,采用同质园试验方法和蜡样芽孢杆菌分子定量的技术,检测原产地和入侵地紫茎泽兰种群植株根部(根系、根际土壤)蜡样芽孢杆菌的含量;使用不同种群紫茎泽兰植株叶片淋溶液和根系分泌液处理入侵地土壤,检测化感物质对土壤中蜡样芽孢杆菌含量的影响。【结果】紫茎泽兰入侵地种群根系蜡样芽孢杆菌含量高于原产地种群,其中入侵地种群C2的含量比原产地种群M1高1172%;在根际土壤中,2年生紫茎泽兰入侵地3个种群的蜡样芽孢杆菌含量显著高于原产地种群M1和M3。紫茎泽兰叶片淋溶液和根系分泌液处理均促进了土壤蜡样芽孢杆菌含量增加,入侵地种群叶片淋溶液处理的土壤的蜡样芽孢杆菌增加量高于原产地种群,根系分泌液处理的后期测定中也如此。【结论】与原产地相比,紫茎泽兰入侵后,根系与根际土壤蜡样芽孢杆菌含量均有所增加,增强了有益菌对入侵地种群的正反馈效应。

关键词：紫茎泽兰蜡样芽孢杆菌化感物质入侵

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Species diversity of thrips (Thysanoptera) in selected avocado orchards from Mexico based on morphology and molecular data

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Journal of Integrative Agriculture 2018年第11期17卷 2509-2517页

作者： Daniel Bravo-Perez Ma. Teresa Santillbn-Galicia Roberto M. Johansen-Naime Hector Gonzalez-Hernandez Obdulia L. Segura-Leon Daniel L, Ochoa-Martinez Stephanie Guzman-Valencia posgrado en fitosanidad-entomologia y Acarologia Colegio de Postgraduados Km 36.5 Carretera Mexico-Texcoco Montecillo Texcoco Estado de Mexico 56230 Mexico Instituto de Biologia de la Universidad Nacional Autonoma de Mexico (IBUNAM) Circuito exterior s/n Ciudad Universitaria Coyoacan Ciudad de Mexico 04510 Mexico posgrado en fitosanidad-Fitopatologia Colegio de Postgraduados Km 36.5 Carretera Mexico-Texcoco Montecillo Texcoco Estado de Mexico 56230 Mexico

Avocado is one of the most important crops in the world, and Mexico is the largest producer of this fruit. Several insect pests affect its production, and thrips are amongst the most important. A key step in the design of control methods is accurate species identification. Despite this, formal reports on species diversity of thrips in Mexico are very scarce. Morphological identification can sometimes be time-consuming and inconclusive. Therefore, we explored the species diversity of thrips in Mexican avocado orchards （Michoacan state） based on partial sequences of the mitochondrial gene cytochrome oxidase subunit I （COl）. Forty-four specimens were analysed, which represented approximately 8% of all individuals collected from five localities distributed in three Municipalities. All specimens were analysed using the COl marker, and specimens within the genera Frankliniella were also analysed using a marker within the D2 domain of the 28S （28SD2） nuclear ribosomal DNA. Molecular identifications were confirmed using morphological taxonomy. Overall, six genera were found （Neohydatothrips, Scirtothrips, Frankliniella, Arorathrips, Caliothrips and Leptothrips）. AII genera contained only one species, except Frankliniella, for which there were six species. Data from the two molecular markers suggest the existence of cryptic species within Mexican F. occidentalis populations.

关键词： molecular taxonomy morphological identification cytochrome oxidase subunit I 28S nuclear ribosomal DNA.

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ISG15 and ISGylation:Emergence in the cytoskeleton dynamic and tumor microenvironment

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BIOCELL 2022年第5期46卷 1209-1213页

作者： ANGELES C.TECALCO-CRUZ posgrado en Ciencias Genómicas Universidad Autónoma de la Ciudad de México(UACM)Ciudad de México03300México

Cytoskeletal remodeling affects the shape,adhesion,and motility of cells.Cytoskeletal dynamics are modulated by matrix proteins,integrins,and several cytokines in the tumor microenvironment.In this scenario,signaling is activated by integrins and interferons,which can induce ISG15 gene expression.This gene encodes a ubiquitin-like protein that functions as a protein modifier via the ISGylation system.Furthermore,non-conjugated ISG15 acts as a cytokine-like protein.In this viewpoint,the interplay between free ISG15,protein ISGylation,and cytoskeletal dynamics in the tumor microenvironment is discussed.

关键词： Tumor microenvironment ISG15 ISGylation Cytoskeleton dyn

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Historical fluxes of metal and metalloids in an aquatic ecosystem affected by land-use change and mining activities in northwestern Mexico

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International Journal of Sediment Research 2023年第5期38卷 724-738页

作者： Ochoa-Contreras Roberto Jara-Marini Martín enrique Ruiz-Fernández Ana Carolina Sanchez-Cabeza Joan Albert Meza-Figueroa Diana Pérez-Bernal Libia Hascibe posgrado en Ciencias Centro de Investigación en Alimentación y Desarrollo Unidad Hermosillo 2. Centro de Investigación en Alimentación y Desarrollo Unidad Hermosillo Unidad Acad emica Mazatlán Instituto de Ciencias del Mar y Limnología Universidad Nacional Autónoma de M exico Departamento de Geología División de Ciencias Exactas y Naturales Universidad de Sonora Rosales y Encinas

Freshwater reservoirs are essential owing because of their ecological, economic, and social importance.They are particularly vulnerable to contamination, as of metal and metalloids, derived from anthropogenic activities like mining. The temporal variations in trace element concentrations(arsenic(As),mercury(Hg), chromium(Cr), copper(Cu), nickel(Ni), lead(Pb), and zinc(Zn)), enrichment, fluxes, and possible sources were evaluated by studying two sediment cores from the La Angostura(ANG) Reservoir(northwest Mexico), using210Pb geochronology. The enrichment factors showed from null to minor enrichment for most elements, but moderate to severe enrichment of mercury(Hg). Most trace element concentrations had a detrital origin, and notable Hg concentration increases since the past decade were associated with severe drought periods, likely resulting from wildfires. The observed sediment concentrations of As and Hg can cause adverse effects on biota in the ecosystem since they are above the probable effect level(PEL). Development of strategies for metal attenuation in this reservoir is recommended and metals should be controlled until specific ecotoxicological studies are performed.

关键词： Aquatic ecosystems ~(210)Pb geochronology Mining activities Metals Metalloids enrichment factors

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HP0953-hypothetical virulence factor overexpresion and localization during Helicobacter pylori infection of gastric epithelium

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World Journal of Gastroenterology 2022年第29期28卷 3886-3902页

作者： Nancy K Arteaga-Resendiz Gerardo E Rodea Rosa María Ribas-Aparicio Alma L Olivares-Cervantes Juan Arturo Castelán-Vega Joséde Jesús Olivares-Trejo Sandra Mendoza-Elizalde Edgar O López-Villegas Christian Colín Pamela Aguilar-Rodea Alfonso Reyes-López Marcela Salazar García Norma Velázquez-Guadarrama Laboratorio de Investigación en enfermedades Infecciosas Hospital Infantil de México Federico GómezMexico City 06720Mexico posgrado en Biomedicina y Biotecnología Molecular Laboratorio de Producción y Control de BiológicosEscuela Nacional de Ciencias BiológicasInstituto Politécnico NacionalMexico City 11340Mexico Laboratorio de Adquisición de Hierro Universidad Autónoma de la Ciudad MéxicoPosgrado Ciencias GenómicaMexico City 03100Mexico Laboratorio Central de Microscopía Escuela Nacional de Ciencias BiológicasInstituto Politécnico NacionalMexico City 11340Mexico Centro de estudios económicos y sociales en salud Hospital Infantil de México Federico GómezMexico City 06720Mexico Laboratorio de Investigación en Biología del Desarrollo y Teratogénesis Experimental Hospital Infantil de México Federico GómezMexico City 06720Mexico

BACKGROUND The high prevalence and persistence of Helicobacter pylori(H. pylori) infection, as well as the diversity of pathologies related to it, suggest that the virulence factors used by this microorganism are varied. Moreover, as its proteome contains 340hypothetical proteins, it is important to investigate them to completely understand the mechanisms of its virulence and survival. We have previously reported that the hypothetical protein HP0953 is overexpressed during the first hours of adhesion to inert surfaces, under stress conditions, suggesting its role in the environmental survival of this bacterium and perhaps as a virulence factor.AIM To investigate the expression and localization of HP0953 during adhesion to an inert surface and against gastric(AGS) cells.METHODS Expression analysis was performed for HP0953 during H. pylori adhesion. HP0953 expression at 0,3, 12, 24, and 48 h was evaluated and compared using the Kruskal-Wallis equality-of-populations rank test. Recombinant protein was produced and used to obtain polyclonal antibodies for immunolocalization. Immunogold technique was performed on bacterial sections during adherence to inert surfaces and AGS cells, which was analyzed by transmission electron microscopy. HP0953 protein sequence was analyzed to predict the presence of a signal peptide and transmembrane helices, both provided by the ExPASy platform, and using the GLYCOPP platform for glycosylation sites. Different programs, via, I-TASSER, RaptorX, and HHalign-Kbest, were used to perform three-dimensional modeling.RESULTS HP0953 exhibited its maximum expression at 12 h of infection in gastric epithelium cells.Immunogold technique revealed HP0953 localization in the cytoplasm and accumulation in some peripheral areas of the bacterial body, with greater expression when it is close to AGS cells.Bioinformatics analysis revealed the presence of a signal peptide that interacts with the transmembrane region and then allows the release of the protein to the external environment. The programs also

关键词： Hypothetical protein HP0953 Adherence Helicobacter pylori Glycocalyx Virulence factor Persistence

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Ecological distribution and population structure of Litsea glaucescens(Lauraceae)in the ravines of Sierra Fría and Sierra Laurel,Central Mexico

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Journal of Mountain Science 2022年第7期19卷 1945-1960页

作者： Mara Irais FLORES-GALLEGOS Edmundo GARCIA-MOYA Angelica ROMERO-MANZANARES Mario LUNA-CAVAZOS Martin Alfonso MenDOZA-BRISenO Heike VIBRANS posgrado en Botánica Colegio de PostgraduadosCampus Montecillo.Km 36.5carretera México-TexcocoMontecilloTexcocoEdo.de México56230México Colegio de Postgraduados Campus Veracruz.Carretera Jalapa Veracruz Km 88.5Altamirano91690VeracruzMéxico

Litsea glaucescens Kunth(Mexican bay leaf,laurel)has a wide distribution in Mexico,growing at both riparian and rupicolous environments in the mountainous region of the Central Highlands of the country.Sierra Fría-Sierra Laurel is a protected natural area covered by a dry forest.The Mexican bay leaf is associated with the oak forest,especially on ravines.The species has been considered at risk in recent years.This research is focused on analyzing the elements of the environment of the ravines,which are influencing the distribution and establishment of laurel populations in the region.Two mountainous regions of Aguascalientes were selected,Sierra Fría and Sierra Laurel.Three ravines of the basin were selected to obtain environmental data.Variables registered were topographic,edaphic,and biotic.Principal component analysis was used to identify ecological factors associated with the presence of L.glaucescens.Mexican bay leaf populations were registered in 10 ravines.At the structural level in the community,29 woody species were registered,Mexican bay leaf had an Importance Value Index of 15.8,ranking 10th among all species.Individuals of laurel were classified by size classes(S,individuals with heights ranging from 0 to 20 cm;S,heights ranging from 0.2 to 1.0 m;S,heights between 1 and 2 m with light trace of flowering;S,heights greater than 2 m with flowering greater than 30% of the canopy;and S,individuals with heights greater than 5 m,curved trunk and basal regrowth)to obtain the population structure.The importance index value for all the species in the riparian community was calculated to the community level.Edaphic factors that characterized the presence of Mexican bay leaf were a high percentage of rock coverage(90%),less mulch depth,and sandy loam shallow soils.Sites that showed higher cation exchange capacity had a higher presence of individuals of the S,S,and Ssize classes.Class Sindividuals were found in shady places with 97% of intercepted light.Individuals of classes Sand Sendure less shady places(75%–85%

关键词： Dry Forest Ephemeral stream Importance Value Index Mexican bay leaf Population structure Principal Component Analysis

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