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Phase separation of the nuclear pore complex facilitates selective nuclear transport to regulate plant defense against pathogen and pest invasion

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Molecular Plant 2023年第6期16卷 1016-1030页

作者： Jiaojiao Wang Gaofeng Pei Yupei Wang Dewei Wu Xiaokang Liu Gaoming Li Jianfang He Xiaolin Zhang Xiaoyi Shan Pilong Li Daoxin Xie MOE Key laboratory of Bioinformatics Tsinghua-Peking Joint Center for Life Sciencesand Schoolof Life SciencesTsinghua UniversityBeijing 100084China Bejing Advanced Innovation Center for Structural biology&Frontier Research Center for Biological Structure Beijing 100084China College of Bioscience and biotechnology Yangzhou UniversityYangzhou 225009China Shenzhen Branch of Guangdong laboratory for Lingnan Modern Agriculture Genome Analysis Laboratory of the Ministry of AgricultureAgricultural Genomics Institute at ShenzhenChinese Academy of Agricultural SciencesShenzhen 518124China

The nuclear pore complex(NPC),the sole exchange channel between the nucleus and cytoplasm,is composed of several subcomplexes,among which the central barrier determines the permeability/selectivity of the NPC to dominate the nucleocytoplasmic trafficking essential for many important signaling events in yeast and *** plant NPC central barrier controls selective transport is a crucial question remaining to be *** this study,we uncovered that phase separation of the central barrier is critical for the permeability and selectivity of plant NPC in the regulation of various biotic *** assays of nup62 mutants and complementary lines showed that NUP62 positively regulates plant defense against Botrytis cinerea,one of the world’s most disastrous plant ***,in vivo imaging and in vitro biochemical evidence revealed that plant NPC central barrier undergoes phase separation to regulate selective nucleocytoplasmic transport of immune regulators,as exemplified by MPK3,essential for plant resistance to ***,genetic analysis demonstrated that NPC phase separation plays an important role in plant defense against fungal and bacterial infection as well as insect *** findings reveal that phase separation of the NPC central barrier serves as an important mechanism to mediate nucleocytoplasmic transport of immune regulators and activate plant defense against a broad range of biotic stresses.

关键词： nuclear pore complex phase separation plant defense MPK3

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Immobilization and characterization of the Lactarius deliciosus mycelia-embedded polylysine-alginate beads and their decolorization performance

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Frontiers of Chemical Science and Engineering 2023年第12期17卷 2001-2013页

作者： Yiwen Jin Jie Yuan Caixia Liu Jiacheng Sun Youbin Liu Zhifeng Ding Qingxi Wu School of Life Sciences Anhui UniversityHefei 230601China Key laboratory of Eco-engineering and biotechnology of Anhui Province and Anhui Key laboratory of Modern Biomanufacturing Hefei 230601China Department of Chemistry The University of Western OntarioOntario N6A 5B7Canada

Liquid fermented fungal mycelia with decolorization capability have potential applications in scale-up. In this work, the Lactarius deliciosus mycelia were immobilized on ε-polylysine-alginate beads, and the decolorization effects of ε-polylysine-alginate beads were demonstrated along with Coomassie brilliant blue G-250 as a model dye. Morphology observation confirmed the beads had an exterior film and interior capsule with honeycomb microstructures suitable for mycelia growth. It was manifested that the maximum decolorization efficiency for mycelia was 98.5% at a removal rate of 0.68 mg·L^(-1)·h after 3 days. In comparison, the decolorization efficiency of the immobilized mycelia reached the maximum value of 97.3% at a removal rate of 6.1 mg·L^(-1)·h after 8 h. The enzyme activities of lignin peroxidase and laccase tested in the immobilized mycelia were significantly higher than in that of the free ones, such as the lignin peroxidase had the highest enzyme activity of 77.6 ± 7.4 U·L^(-1) in the former, while of 27.4 ± 8.7 U·L^(-1) in the latter. The immobilization of L. deliciosus mycelia could improve the decolorization of Coomassie brilliant blue G-250 efficiently. The prepared ε-polylysine-alginate beads embedded with L. deliciosus mycelia have very good reusability and a great potential in decolorizing analog dyes.

关键词： Lactarius deliciosus mycelia immobilization decolorization polylysine-alginate beads Coomassie brilliant blue G-250

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Enhancing rice resistance to fungal pathogens by transformation with cell wall degrading enzyme genes from Trichoderma atroviride

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Journal of Zhejiang University-Science A(Applied Physics & Engineering) 2004年第2期5卷 5-8页

作者：刘梅,孙宗修,朱洁,徐同 ,HARMAN Gary E,LORITO Matteo College of Agriculture and biotechnology Zhejiang University Hangzhou 310029 China Key laboratory for Rice biology Ministry of Agriculture China National Rice Research Institute Hangzhou 310006 China Key laboratory for Rice biology Ministry of Agriculture China National Rice Research Institute Hangzhou 310006 China College of Agriculture and biotechnology Zhejiang University Hangzhou 310029 China Department of Horticultural Sciences Cornell University Geneva USA Institute of Plant Pathology Napoli University Tritici Italy

Three genes encoding for fungal cell wall degrading enzymes (CWDEs), ech42, nag70 and gluc78 from the biocontrol fungus Trichoderma atroviride were inserted into the binary vector pCAMBIA1305.2 singly and in all possible combinations and transformed to rice plants. More than 1800 independently regenerated plantlets in seven different popu-lations (for each of the three genes and each of the four gene combinations) were obtained. The ech42 gene encoding for an endochitinase increased resistance to sheath blight caused by Rhizoctonia solani, while the exochitinase-encoding gene, nag70, had lesser effect. The expression level of endochitinase but exochitinase was correlated with disease resistance. Nevertheless, exochitinase enhanced the effect of endochitinase on disease resistance when the two genes co-expressed in transgenics. Resistance to Magnaporthe grisea was found in all kinds of regenerated plants including that with single gluc78. A few lines expressing either ech42 or nag70 gene were immune to the disease. Transgenic plants are being tested to further evaluate disease resistance at field level. This is the first report of multiple of expression of genes encoding CWDEs from Trichoderma atroviride that result in resistance to blast and sheath blight in rice.

关键词： Agrobacterium-mediated transformation Rice sheath blight Rice blast Trichoderma atroviride Chitinase Glucanase

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Ranking higher taxa using divergence times:a case study in Dothideomycetes

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fungal Diversity 2017年第3期84卷 75-99页

作者： Jian-Kui Liu Kevin D.Hyde Rajesh Jeewon Alan J.L.Phillips Sajeewa S.N.Maharachchikumbura Martin Ryberg Zuo-Yi Liu Qi Zhao Key laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201People’s Republic of China Guizhou Institute of biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006People’s Republic of China Guizhou Key laboratory of Agricultural biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006People’s Republic of China Center of Excellence in fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Departmental of Health Sciences Faculty of ScienceUniversity of MauritiusReduitMauritius University of Lisbon Faculty of SciencesBiosystems and Integrative Sciences InstituteCampo Grande1749-016 LisbonPortugal Department of Crop Sciences College of Agricultural and Marine SciencesSultan Qaboos UniversityPO Box 8123 Al KhoudOman Department of Organismal biology Uppsala UniversityNorbyvägen 18D75236 UppsalaSweden

The current classification system for the recognition of taxonomic ranks among fungi,especially at highranking level,is *** the development of molecular approaches and the availability of fossil calibration data,the use of divergence times as a universally standardized criterion for ranking taxa has now become *** can therefore date the origin of Ascomycota lineages by using molecular clock methods and establish the divergence times for the orders and families of *** chose Dothideomycetes,the largest class of the phylum Ascomycota,which contains 32 orders,to establish ages at which points orders have split;and Pleosporales,the largest order of Dothideomycetes with 55 families,to establish family divergence *** have assembled a multi-gene data set(LSU,SSU,TEF1 and RPB2)from 391 taxa representing most family groups of Dothideomycetes and utilized fossil calibration points solely from within the ascomycetes and a Bayesian approach to establish divergence times of Dothideomycetes *** separated datasets were analysed:(i)272 taxa representing 32 orders of Dothideomycetes were included for the order level analysis,and(ii)191 taxa representing 55 families of Pleosporales were included for the family level *** results indicate that divergence times(crown age)for most orders(20 out of 32,or 63%)are between 100 and 220 Mya,while divergence times for most families(39 out of 55,or 71%)are between 20 and 100 *** believe that divergence times can provide additional evidence to support establishment of higher level taxa,such as families,orders and *** advantage of this added approach,we can strive towards establishing a standardized taxonomic system both within and outside *** this study we found that molecular dating coupled with phylogenetic inferences provides no support for the taxonomic status of two currently recognized orders,namely Bezerromycetales and Wiesneriomycetales and these are treated as sy

关键词： BEAST Clade age Classification Calibration Family Order Phylogeny Pleosporales

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An Oryza-specific hydroxycinnamoyl tyramine gene cluster contributes to enhanced disease resistance

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Science Bulletin 2021年第23期66卷 2369-2380页

作者： Shuangqian Shen Meng Peng Hong Fang Zixuan Wang Shen Zhou Xinyu Jing Meng Zhang Chenkun Yang Hao Guo Yufei Li Long Lei Yuheng Shi Yangyang Sun Xianqing Liu Congping Xu Takayuki Tohge Meng Yuan Alisdair R.Fernie Yuese Ning Guo-Liang Wang Jie Luo National Key laboratory of Crop Genetic Improvement and National Center of Plant Gene Research(Wuhan) Huazhong Agricultural UniversityWuhan 430070China College of Tropical Crops Hainan UniversityHaikou 570228China State Key laboratory for biology of Plant Diseases and Insect Pests Institute of Plant ProtectionChinese Academy of Agricultural SciencesBeijing 100193China Department of Plant Pathology Ohio State UniversityColumbus OH 43210USA VIB-UGent Center for Plant Systems biology Ghent UniversityGhent 9052Belgium Max Planck Institute of Molecular Plant Physiology Potsdam-Golm 14476Germany Center of Plant Systems biology and biotechnology Plovdiv 4000Bulgaria Graduate School of Biological Sciences Nara Institute of Science and TechnologyIkoma Nara 630-0192Japan

Genomic clustering of non-homologous genes for the biosynthesis of plant defensive compounds is an emerging theme, but insights into their formation and physiological function remain limited. Here we report the identification of a newly discovered hydroxycinnamoyl tyramine(HT) gene cluster in *** cluster contains a pyridoxamine 50-phosphate oxidase(Os PDX3) producing the cofactor pyridoxal50-phosphate(PLP), a PLP-dependent tyrosine decarboxylase(Os Ty DC1), and two duplicated hydroxycinnamoyl transferases(Os THT1 and Os THT2). These members were combined to represent an enzymological innovation gene cluster. Natural variation analysis showed that the abundance of the toxic tyramine intermediate of the gene cluster among different rice accessions is mainly determined by the coordinated transcription of Os Ty DC1 and Os THT1. Further pathogen incubation assays demonstrated that the end products of the HT gene cluster displayed enhanced resistance to the bacterial pathogen Xanthomonas oryzae pv. Oryzae(Xoo) and fungal pathogen Magnaporthe oryzae(M. oryzae), and the enhanced resistance is associated with the boost of phytoalexins and the activation of defense response. The unique presence of the HT gene cluster in Oryza AA genome, together with the enrichment of transposon elements within this gene cluster region, provides an evolutionary background to accelerate cluster member combinations. Our study not only discovered a gene cluster involved in the phenylpropanoid metabolism but also addressed the key aspects of gene cluster formation. In addition, our results provide a new metabolic pool for plant defense against pathogens.

关键词： Rice Gene cluster Hydroxycinnamic acid amide Phytoalexin Xanthomonas oryzae pv.oryzae Magnaporthe oryzae Transposon element

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A six-gene phylogenetic overview of Basidiomycota and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective

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fungal Diversity 2017年第3期84卷 43-74页

作者： Rui-Lin Zhao Guo-Jie Li Santiago Sanchez-Ramirez Matt Stata Zhu-Liang Yang Gang Wu Yu-Cheng Dai Shuang-Hui He Bao-Kai Cui Jun-Liang Zhou Fang Wu Mao-Qiang He Jean-Marc Moncalvo Kevin D.Hyde State Key laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesChaoyang DistrictBeijing 100101China College of Life Sciences University of Chinese Academy of SciencesHuairou DistrictBeijing 100408China Department of Ecology and Evolutionary biology University of TorontoTorontoON M5S 3B2Canada Department of Natural History Royal Ontario MuseumTorontoON M5S 2C6Canada Key laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201YunnanChina Institute of Microbiology and Beijing Key laboratory for Forest Pest Control Beijing Forestry UniversityBeijing 100083China Center of Excellence in fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Key laboratory of Economic Plants and biotechnology Kunming Institute of BotanyChinese Academy of SciencesKunming 650201YunnanChina

In this paper,we provide a phylogenetic overview of Basidiomycota and related phyla in relation to ten years of DNA based phylogenetic studies since the AFTOL publications in *** selected 529 species to address phylogenetic relationships of higher-level taxa using a maximumlikelihood framework and sequence data from six genes traditionally used in fungal molecular systematics(nrLSU,nrSSU,5.8S,tef1-a,rpb1 and rpb2).These species represent 18 classes,62 orders,183 families,and 392 genera from the phyla Basidiomycota(including the newly recognized subphylum Wallemiomycotina)and Entorrhizomycota,and 13 species representing 13 classes of Ascomycota as outgroup *** also conducted a molecular dating analysis based on these six genes for 116 species representing 17 classes and 54 orders of Basidiomycota and *** we performed a phyloproteomics analysis from 109 Basidiomycota species and 6 outgroup taxa using amino-acid sequences retrieved from 396 orthologous *** of higher taxa follows the criteria in Zhao et al(fungal Divers 78:239–292,2016):(i)taxa must be monophyletic and statistically well-supported in molecular dating analyses,(ii)their respective stem ages should be roughly equivalent,and(iii)stem ages of higher taxa must be older than those of lower level *** time-tree indicates that the mean of stem ages of Basidiomycota and Entorrhizomycota are ca.530 Ma;subphyla of Basidiomycota are 406–490 Ma;most classes are 358–393 Ma for those of Agaricomycotina and 245–356 Ma for those of Pucciniomycotina and Ustilaginomycotina;most orders of those subphyla split 120–290 *** of most higherlevel taxa of Basidiomycota are generally supported,especially those taxa introduced in the recent ten years:phylum Entorrhizomycota,classes Malasseziomycetes,Moniliellomycetes,Spiculogloeomycetes,Tritirachiomycetes and orders Amylocorticiales,Golubeviales,Holtermanniales,Jaapiales,Lepidostromatales,Robbauerales,Stereopsidales and Tricho

关键词： Fungi Systematics Taxonomy Wallemiomycotina

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White-spot disease of Chinese soft-shelled turtles (Trionyx sinens) caused by Paecilomyces lilacinus

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Journal of Zhejiang University-Science B(Biomedicine & biotechnology) 2008年第7期9卷 578-581页

作者： Xiao-liang LI Chu-long ZHANG Wei-huan FANG Fu-cheng LIN Zhejiang Provincial Key laboratory of Preventive Veterinary Medicine Institute of Preventive Veterinary Medicine Zhejiang University Hangzhou 310029 China Institute of biotechnology Zhejiang University Hangzhou 310029 China

Chinese soft-shelled turtles （Trionyx sinens） in culture farms using an artificial warming system in Zhejiang, China, often show typical signs of white-spot disease such as white spots on their bodies, skin lesions, anorexia and eventually death. The sick turtles were mostly 5-80 g in weight. A suspected fungal pathogen was isolated from the sick turtles and verified as Paecilomyces lilacinus by sequence analysis of the internal transcribed spacer （ITS） of its ribosomal DNA （rDNA）. Detailed morphological examinations were also conducted to confirm the white-spot disease.

关键词： White-spot disease Chinese soft-shelled turtles Paecilomyces lilacinus Zhejiang

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Cytochalasin D,a tropical fungal metabolite,inhibits CT26 tumor growth and angiogenesis

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Asian Pacific Journal of Tropical Medicine 2012年第3期5卷 169-174页

作者： Feng-Ying Huang Yue-Nan Li Wen-Li Mei Hao-Fu Dai Peng Zhou Guang-Hong Tan Agriculture College Hainan University Hainan Provincial Key laboratory of Tropical Medicine Hainan Medical College Institute of Tropical Bioscience and biotechnology Chinese Academy of Tropical Agricultural Sciences

Objective:To investigate whether eytochalasin D can induce antitumor activities in a tumor ***:Murine CT26 colorectal carcinoma cells were cultured hi vitro and cytochalasin D was used as a cytotoxic agent to detect its capabilities of inhibiting CT26 cell proliferation and inducing cell apoptosis by MTT and a TUNEL-based apoptosis *** CT26 tumor model was established to observe the tumor growth and survival *** tissues were used to detect the mierovessel density by *** addition,alginate encapsulated tumor cell assay was used to quantify the tumor angiogenesis in ***:Cytochalasin D inhibited CT26 tumor cell proliferation in lime and dose dependent manner and induced signiflcanl CT26 cell apoptosis,which almost reached the level induced by the positive control *** optimum effective dose of cytochalasin D for in vivo therapy was about 50 mg/*** D in vivo treatment significandy inhibited tumor growth and prolonged the survival times in CT26 tumor-bearing *** results of immunohistochemistry analysis and alginate encapsulation assay indicated that the cytochalasin D could effectively inhibited tumor angiogenesis. Conclusions:Cytochalasin D inhibits CT26 tumor growth potentially through inhibition of cell proliferation,induction of cell apoptosis and suppression of tumor angiogenesis.

关键词： Cytochalasin D CT26 colorectal carcinoma Apoptosis Tumor angiogenesis

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Combined genome-wide association study and transcriptome analysis reveal candidate genes for resistance to Fusarium ear rot in maize

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Journal of Integrative Plant biology 2020年第10期62卷 1535-1551页

作者： Lishan Yao Yanmei Li Chuanyu Ma Lixiu Tong Feili Du Mingliang Xu State Key laboratory of Plant Physiology and Biochemistry College of Agronomy and BiotechnologyNational Maize Improvement CenterCenter for Crop Functional Genomics and Molecular BreedingChina Agricultural UniversityBeijing 100193China

Fusarium ear rot,caused by Fusarium verti-cillioides,is a devastating fungal disease in maize that re-duces yield and quality;moreover,*** pro-duces fumonisin mycotoxins,which pose serious threats to human and animal ***,we performed a genome-wide association study(GWAS)under three en-vironmental conditions and identified 34 single-nucleotide polymorphisms(SNPs)that were significantly associated with Fusarium ear rot *** reference to the maize B73 genome,69 genes that overlapped with or were adjacent to the significant SNPs were identified as potential resistance genes to Fusarium ear *** transcriptomes of the most resistant and most susceptible lines during the very early response to Fusarium ear rot,we detected many differentially expressed genes enriched for pathways related to plant immune responses,such as plant hormone signal transduction,phenylpropanoid bio-synthesis,and cytochrome P450 *** than one-fourth of the potential resistance genes detected in the GWAS were differentially expressed in the tran-scriptome analysis,which allowed us to predict numbers of candidate genes for maize resistance to ear rot,in-cluding genes related to plant hormones,a MAP kinase,a PR5-like receptor kinase,and heat shock *** propose that maize plants initiate early immune responses to Fusarium ear rot mainly by regulating the growth-defense balance and promoting biosynthesis of defense compounds.

关键词： resistance analysis Fusarium

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Towards a natural classification and backbone tree for Sordariomycetes

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fungal Diversity 2015年第3期72卷 199-301页

作者： Sajeewa S.N.Maharachchikumbura Kevin D.Hyde EBGareth Jones Eric H.C.McKenzie Shi-Ke Huang Mohamed A.Abdel-Wahab Dinushani A.Daranagama Monika Dayarathne Melvina J.D’souza Ishani D.Goonasekara Sinang Hongsanan Ruvishika S.Jayawardena Paul M.Kirk Sirinapa Konta Jian-Kui Liu Zuo-Yi Liu Chada Norphanphoun Ka-Lai Pang Rekhani H.Perera Indunil C.Senanayake Qiuju Shang Belle Damodara Shenoy Yuanpin Xiao Ali H.Bahkali Jichuan Kang Sayanh Somrothipol Satinee Suetrong Tingchi Wen Jianchu Xu Guizhou Key laboratory of Agricultural biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouChina Key laboratory for Plant Biodiversity and Biogeography of East Asia(KLPB) Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanChina World Agroforestry Centre East and Central Asia132 Lanhei RoadKunming 650201China Institute of Excellence in fungal Research and School of ScienceMae Fah Luang UniversityChiang Rai 57100Thailand Department of Botany and Microbiology College of ScienceKing Saud UniversityP.O.Box 2455Riyadh 11451Kingdom of Saudi Arabia Manaaki Whenua Landcare Research Private Bag 92170AucklandNew Zealand The Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of National Education Ministry of China Guizhou UniversityGuiyang 550025Guizhou ProvincePeople’s Republic of China Department of Botany Faculty of ScienceSohag UniversitySohag 82524Egypt Institute of Marine biology and Centre of Excellence for the Oceans Taiwan Ocean University2 Pei-Ning RoadKeelung 20224TaiwanRepublic of China Mycology Section Royal Botanic GardensKewLondonUK Microbe Interaction laboratory(BMIT) National Center for Genetic Engineering and Biotechnology(BIOTEC)113 Thailand Science ParkPhahonyothin RoadKhlong NuengKhlong LuangPathum ThaniThailand fungal Diversity laboratory(BFBD) National Center for Genetic Engineering and Biotechnology(BIOTEC)113 Thailand Science ParkPhahonyothin RoadKhlong NuengKhlong LuangPathum ThaniThailand Biological Oceanography Division CSIR-National Institute of OceanographyDona PaulaGoa 403004India Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesNo 9 of ShuGuangHuaYuanZhangLuHaidian DistrictBeijing 100097China

Sordariomycetes is one of the largest classes of Ascomycota and is characterised by perithecial ascomata and inoperculate unitunicate *** class includes many important plant pathogens,as well as endophytes,saprobes,epiphytes,and fungicolous,lichenized or lichenicolous *** class includes freshwater,marine and terrestrial taxa and has a worldwide *** paper provides an updated outline of the Sordariomycetes and a backbone tree incorporating asexual and sexual genera in the *** on phylogeny and morphology we introduced three subclasses;Diaporthomycetidae,Lulworthiomycetidae and Meliolomycetidae and five orders;Amplistromatales,Annulatascales,Falcocladiales,Jobellisiales and *** outline is based on literature to the end of 2014 and the backbone tree published in this *** for 397 taxa with information,such as new family and genera novelties,novel molecular data published since the Outline of Ascomycota 2009,and new links between sexual and asexual genera and thus synonymies,are *** Sordariomycetes now comprises six subclasses,28 orders,90 families and 1344 *** addition a list of 829 genera with uncertain placement in Sordariomycetesis also provided.

关键词： Boliniales Calosphaeriales Chaetosphaeriales Coniochaetales Coronophorales Diaporthales Glomerellales Hypocreomycetidae Hypocreales Koralionastetales Lulworthiales Magnaporthales Melanosporales Meliolales Microascales Molecular identification Nomenclature Ophiostomatales Phyllachorales Sordariales Sordariomycetidae Taxonomy Trichosphaeriales Type species Xylariales Xylariomycetidae

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