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15N tracers and microbial analyses reveal in situ N2O sources in contrasting water regimes of a drained peatland forest

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Pedosphere 2024年第4期34卷 749-758页

作者： Mohit MASTA Mikk ESPENBERG Laura KUUSEMETS Jaan P?RN Sandeep THAYAMKOTTU Holar SEPP Kalle KIRSIM?E Fotis SGOURIDIS Kuno KASAK Kaido SOOSAAR ülo MANDER Institute of ecology and Earth Sciences University of Tartu School of Geographical Sciences University of Bristol University Road

Managed peatlands are a significant source of nitrous oxide（N2O）, a powerful greenhouse gas and stratospheric ozone depleter. Due to the complexity and diversity of microbial N2O processes, different methods such as tracer, isotopomer, and microbiological technologies are required to understand these processes. The combined application of different methods helps to precisely estimate these processes, which is crucial for the future management of drained peatlands, and to mitigate soil degradation and negative atmospheric impact. In this study, we investigated N2O sources by combining tracer, isotopomer,and microbial analysis in a drained peatland forest under flooded and drained treatments. On average, the nitrification genes showed higher abundances in the drained treatment, and the denitrification genes showed higher abundances in the flooded treatment. This is consistent with the underlying chemistry,as nitrification requires oxygen while denitrification is anaerobic. We observed significant differences in labelled N2O fluxes between the drained and flooded treatments. The emissions of N2O from the flooded treatment were nearly negligible, whereas the N2O evolved from the nitrogen -15(15N)-labelled ammonium(15NH4+) in the drained treatment peaked at 147 μg15N m-2h-1. This initially suggested nitrification as the driving mechanism behind N2O fluxes in drained peatlands, but based on the genetic data, isotopic analysis, and N2O mass enrichment, we conclude that hybrid N2O formation involving ammonia oxidation was the main source of N2O emissions in the drained treatment. Based on the15N-labelled nitrate(15NO3-) tracer addition and gene copy numbers, the low N2O emissions in the flooded treatment came possibly from complete denitrification producing inert dinitrogen. At atomic level, we observed selective enrichment of mass 45 of N2O molecule under15NH4+amendment in the drained treatment and enrichment of both masses 45 and 46under15NO3-amendment in the flooded trea

关键词： denitrification field experiment isotopes nitrification nitrous oxide qPCR

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Method Development and Validation of the Simultaneous Analysis of Methylisothiazolinone, Methylchloroisothiazolinone, Benzisothiazolinone and Bronopol in Washing-Up Liquid

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American Journal of Analytical Chemistry 2024年第1期15卷 43-55页

作者： Etienne Jooken Ruis Amery Boudewijn Meesschaert laboratory of microbial and Bio-Chemical Technology (Lab μBCT) Department of Microbial and Molecular Systems KU Leuven-Bruges Campus Brugge Belgium

A method of analysis for the simultaneous determination of methylisothiazolinone (MI), methylchloroisothiazolinone (CMI), benzisothiazolinone (BIT) and Bronopol (BNP) in washing-up liquid was established. The method consisted of a gradient HPLC analysis at three different wavelengths. The four compounds could be analyzed with good precision and accuracy.

关键词： Preservatives Analytical Validation Methylisothiazolinone Methylchloroisothiazolinone Benzisothiazolinone Bronopol HPLC Washing-Up Liquid

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Reply to “Beyond microbial carbon use efficiency”

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National Science Review 2024年第4期11卷 35-37页

作者： Feng Tao Johannes Lehmann Ying-Ping Wang Lifen Jiang Bernhard Ahrens Kostiantyn Viatkin Stefano Manzoni Benjamin Z.Houlton Yuanyuan Huang Xiaomeng Huang Yiqi Luo Department of ecology and Evolutionary Biology Cornell University Soil and Crop Sciences Section School of Integrative Plant ScienceCornell University CSIRO Environment Max Planck Institute for Biogeochemistry Department of Physical Geography and Bolin Centre for Climate Research Stockholm University Department of Global Development Cornell University Key laboratory of Ecosystem Network Observation and Modeling Institute of Geographic Sciences and Natural Resources Research Chinese Academy of Sciences Department of Earth System Science Ministry of Education Key Laboratory for Earth System Modelling Institute for Global Change Studies Tsinghua University

In their commentary, Xiao et al.[1]cautioned that the conclusions on the critical role of microbial carbon use efficiency (CUE) in global soil organic carbon (SOC) storage in the paper by Tao et al.[2] might be too *** claimed that Tao et al.’s study lacked mechanistic consideration of SOC formation and excluded important data *** et al. brought up important points,which can be largely reconciled with our findings by understanding the differences in expressing processes in empirical studies and in models.

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Discrepant responses of soil organic carbon dynamics to nitrogen addition in different layers: a case study in an agroecosystem

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Frontiers of Agricultural Science and Engineering 2024年第2期11卷 314-325页

作者： Hualing HU Liang ZHAO Wenbing TAN Guoan WANG Beidou XI Technical Centre for Soil Agriculture and Rural Ecology and EnvironmentMinistry of Ecology and EnvironmentBeijing 100012China State Key laboratory of Environmental Criteria and Risk Assessment Chinese Research Academy of Environmental SciencesBeijing 100012China College of Resources and Environmental Sciences China Agricultural UniversityBeijing 100193China

Empirical research indicates that heightened soil nitrogen availability can potentially diminish microbial decomposition of soil organic carbon(SOC).Nevertheless, the relationship between SOC turnover response to N addition and soil depth remains unclear. In this study, soils under varying N fertilizer application rates were sampled up to 100 cm deep to examine the contribution of both new and old carbon to SOC across different soil depths,using a coupled carbon and nitrogen isotopic approach. The SOC turnover time for the plot receiving low N addition(250 kg·ha^(-1)·yr^(-1) N) was about 20-40 years. Conversely, the plot receiving high N(450 kg·ha^(-1)·yr^(-1) N) had a longer SOC turnover time than the low N plot, reaching about 100 years in the upper 10-20 cm layer. The rise in SOC over the entire profile with low N addition primarily resulted from an increase in the upper soil(0-40 cm)whereas with high N addition, the increase was mainly from greater SOC in the deeper soil(40-100 cm). Throughout the entire soil layer, the proportion of new organic carbon derived from maize C_4 plant sources was higher in plots treated with a low N rate than those treated with a high N rate. This implies that, in contrast to low N addition agricultural practices, high N addition predominantly enhances the soil potential for fixing SOC by transporting organic matter from surface soils to deeper layers characterized by more stable properties. This research offers a unique insight into the dynamics of deep carbon under increased N deposition, thereby aiding in the formulation of policies for soil carbon management.

关键词： ^(13)C natural abundance nitrogen addition soil depth organic carbon turnover

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Eugenol targeting CrtM inhibits the biosynthesis of staphyloxanthin in Staphylococcus aureus

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Food Science and Human Wellness 2024年第3期13卷 1368-1377页

作者： Jiang Chang Bo Chen Zeqian Du Bowen Zhao Jiahui Li Ziyi Li Kannappan Arunachalam Ting Shi Dongqing Wei Chunlei Shi MOST-USDA Joint Research Center for Food Safety School of Agriculture and BiologyState Key Laboratory of Microbial MetabolismShanghai Jiao Tong UniversityShanghai 200240China School of Life Sciences and Biotechnology Shanghai Jiao Tong UniversityShanghai 200240China

Staphylococcus aureus is a serious foodborne pathogen threatening food safety and public *** the emergence of methicillin-resistant Staphylococcus aureus(MRSA)increased the difficulty of *** *** is a crucial virulence factor of *** staphyloxanthin production could help the host immune system counteract the invading *** *** this study,we first screened for staphyloxanthin inhibitors using a virtual screening *** outcome of the virtual screening method resulted in the identification of eugenol(300μg/mL),which significantly inhibits the staphyloxanthin production in *** ATCC 29213,*** Newman,MRSA ATCC 43300 and MRSA ATCC BAA1717by 84.2%,63.5%,68.1%,and 79.5%,*** outcome of the growth curve assay,field-emission scanning electron,and confocal laser scanning microscopy analyses confirmed that eugenol at the test concentration did not affect the morphology and growth of ***,the survival rate of *** ATCC 29213 and MRSA ATCC 43300 under H_(2)O_(2) pressure decreased to 51.9%and 45.5%in the presence of eugenol,*** quantitative RT-PCR and molecular simulation studies revealed that eugenol targets staphyloxanthin biosynthesis by downregulating the transcription of the crtM gene and inhibiting the activity of the CrtM *** together,we first determined that eugenol was a prominent compound for staphyloxanthin inhibitor to combat *** especially MRSA infections.

关键词： Staphylococcus aureus Staphyloxanthin Eugenol Virtual screening 4 4’-Diapophytoene synthase(CrtM)

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Camellia sinensis CsMYB4a participates in regulation of stamen growth by interaction with auxin signaling transduction repressor CsAUX/IAA4

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The Crop Journal 2024年第1期12卷 188-201页

作者： Guoliang Ma Mingzhuo Li Yingling Wu Changjuan Jiang Yifan Chen Dawei Xing Yue Zhao Yajun Liu Xiaolan Jiang Tao Xia Liping Gao School of Life Science Anhui Agricultural UniversityHefei 230036AnhuiChina Plant for Human Health Institute Department of Plant and Microbial BiologyNorth Carolina State UniversityKannapolisNC 28081USA State Key laboratory of Tea Plant Biology and Utilization/Key laboratory of Tea Biology and Tea Processing of Ministry of Agriculture/Anhui Provincial laboratory of Tea Plant Biology and Utilization Anhui Agricultural UniversityHefei 230036AnhuiChina

Subgroup 4(Sg4)members of the R2R3-MYB are generally known as negative regulators of the phenylpropanoid pathway in *** previous research showed that a R2R3-MYB Sg4 member from Camellia sinensis(CsMYB4a)inhibits expression of some genes in the phenylpropanoid pathway,but its physiological function in the tea plant remained ***,CsMYB4a was found to be highly expressed in anther and filaments,and participated in regulating filament *** analysis and exogenous auxin treatment showed that the target of CsMYB4a might be the auxin signal ***/indole-3-acetic acid 4(AUX/IAA4),a repressor in auxin signal transduction,was detected from a yeast two-hybrid screen using CsMYB4a as *** silencing assays showed that both CsIAA4 and CsMYB4a regulate filament *** plants overexpressing CsIAA4 were insensitive to exogenous a-NAA,consistent with overexpression of ***-protein interaction experiments revealed that CsMYB4a interacts with N-terminal of CsIAA4 to prevent CsIAA4 *** out of the endogenous NtIAA4 gene,a CsIAA4 homolog,in tobacco alleviated filament growth inhibition and a-NAA insensitivity in plants overexpressing *** results strongly suggest that CsMYB4a works synergistically with CsIAA4 and participates in regulation of the auxin pathway in stamen.

关键词： AUX/IAA4 Auxin signaling CsMYB4a Subgroup 4 R2R3-MYB

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Host-Induced Gene Silencing of Effector AGLIP1 Enhanced Resistance of Rice to Rhizoctonia solani AG1-IA

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Rice science 2024年第4期31卷 463-474,I0031-I0034页

作者： ZHAO Mei LIU Xiaoxue WAN Jun ZHOU Erxun SHU Canwei Pesticide State Key laboratory of Green Pesticide Guangdong Province Key Laboratory of Microbial Signals and Disease ControlCollege of Plant ProtectionSouth China Agricultural UniversityGuangzhou 510642China College of Life Science and Engineering Henan University of Urban ConstructionPingdingshan 467036China

Rice sheath blight, caused by Rhizoctonia solani AG1-IA, is a major disease in rice-growing areas worldwide. Effectors of phytopathogenic fungi play important roles during the infection process of fungal pathogens onto their host plants. However, the molecular mechanisms by which R. solani effectors regulate rice immunity are not well understood. Through prediction, 78 candidate effector molecules were identified. Using the tobacco rattle virus-host induced gene silencing(TRV-HIGS) system, 45 RNAi constructs of effector genes were infiltrated into Nicotiana benthamiana leaves. The results revealed that eight of these constructs resulted in a significant reduction in necrosis caused by infection with the AG1-IA strain GD-118. Additionally, stable rice transformants carrying the double-stranded RNA construct for one of the effector genes, AGLIP1, were generated to further verify the function of this gene. The suppression of the AGLIP1 gene increased the resistance of both N. benthamiana and rice against GD-118, and also affected the growth rate of GD-118, indicating that AGLIP1 is a key pathogenic factor. Small RNA sequencing showed that the HIGS vectors were processed into si RNAs within the plants and then translocated to the fungi, leading to the silencing of the target genes. As a result, AGLIP1 might be an excellent candidate for HIGS, thereby enhancing crop resistance against the pathogen and contributing to the control of R. solani infection.

关键词： Rhizoctonia solani host-induced gene silencing lipase tobacco rattle virus

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How aging affects bone health via the intestinal micro-environment

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BIOCELL 2024年第3期48卷 353-362页

作者： HUAN HU YUE HUANG FANGZHOU LIU QIAN WANG YANZI YAO School of Stomatology Zunyi Medical UniversityZunyiChina microbial Resources and Drug Development Key laboratory of Guizhou Tertiary Institution Zunyi Medical UniversityZunyiChina Department of Stomatology Luoyang Maternal and Child Health HospitalLuoyangChina

Increasing life expectancy and an aging population lead to age-related bone diseases like osteoporosis and low bone mass more *** conditions represent a common,costly and chronic burden,not only for elderly but also to society at ***,elucidating the pathophysiology and developing effective therapies for these diseases is of paramount *** advances in research have identiﬁed the gut as a novel and promising target for addressing bone disorders,giving rise to the concept of the“gut-bone axis”.An in-depth review of the latest insights into the effects of age-related physiological changes in the gastrointestinal tract on bone health is presented in this *** examines how the“gut-bone”axis interacts with bone aging across various domains,including metabolism,nutrition,intestinal permeability,immunity,and oxidative stress.

关键词： Gut barrier Skeletal system Senescent Gut-bone axis Gut microbiota

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Inhibitory effect and mechanism of tannic acid against two starch digestive enzymes

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Food Quality and Safety 2024年第1期8卷 115-123页

作者：钟毓秀倪德让杨玉波李元一王莉田金虎杨帆叶兴乾 Department of Food Science and Nutrition Zhejiang Key Laboratory for Agri-Food ProcessingFuli Institute of Food ScienceZhejiang R&D Centre for Food Technology and EquipmentZhejiang UniversityHangzhouChina Institute of Science and Technology Moutai GroupZunyiChina Key laboratory of Industrial microbial Resources Development Kweichow Moutai Co.Ltd.RenhuaiChina

Backgrounds:Tannic acid(TA),as a plant-derived phenolic substance,is involved in regulating the activity of starch digestive enzymes,but its underlying mechanism remains *** and Results:In the present study,inhibition rate and inhibition kinetics assays were performed and confrmed that TA had a strong inhibitory effect on bothα-amylase andα-glucosidase with IC50 values of 0.1585 mg/mL and 0.00542 mg/mL,respectively,through a mixed inhibition *** secondary structures of both enzymes were confrmed to be modifed by TA through circular dichroism(CD)*** quenching analysis revealed that the interaction between TA and two enzymes was a static process of pontaneous complex ***,molecular docking revealed that non-covalent bonds were the main interaction forces between TA and both ***:Thus,TA was a promising candidate for the inhibition of starch-digesting enzymes,and the present research provided insight into postprandial glucose regulation through polyphenols.

关键词： Tannic acid α-amylase α-glucosidase inhibition starch digestion.

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Cultivating the uncultured:Harnessing the“sandwich agar plate”approach to isolate heme-dependent bacteria from marine sediment

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mLife 2024年第1期3卷 143-155页

作者： Jing Zhang Qi-Yun Liang Da-Shuai Mu Fengbai Lian Ya Gong Mengqi Ye Guan-Jun Chen Yuqi Ye Zong-Jun Du State Key laboratory of microbial Techlogy Insttute of Micrbial TchnoogyShandong UniversityQingdaoChina Marine College Shandong UniverstyWeihaiChina Shandong University-Weihai Research Institute of Industrial Technology WeihaiChina

In the classical microbial isolation technique,the isolation process inevitably destroys all microbial interactions and thus makes it difficult to culture the many microorganisms that rely on these interactions for *** this study,we designed a simple coculture technique named the“sandwich agar plate method,”which maintains microbial interactions throughout the isolation and pure culture *** total yield of uncultured species in sandwich agar plates based on eight helper strains was almost 10-fold that of the control *** uncultured species displayed commensal *** study found that heme was the growth-promoting factor of some marine commensal *** genomic analysis revealed that heme auxotrophies were common in various biotopes and prevalent in many uncultured microbial ***,our study supported that the survival strategies of heme auxotrophy in different habitats varied *** findings highlight that cocultivation based on the“sandwich agar plate method”could be developed and used to isolate more uncultured bacteria.

关键词： cultivation growth factors heme sandwich agar plate uncultured bacteria

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