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Plasma metabolomics combined with mass spectrometry imaging reveals crosstalk between tumor and plasma in gastric cancer genesis and metastasis

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Chinese Chemical Letters 2025年第1期36卷 506-512页

作者： Yanhua Chen Xian Ding Jun Zhou Zhaoying Wang Yunhai Bo Ying Hu Qingce Zang Jing Xu Ruiping Zhang Jiuming He Fen Yang Zeper Abliz Key Laboratory of Mass Spectrometry Imaging and metabolomics(State Ethnic Affairs Commission) Center for Imaging and Systems BiologyCollege of Life and Environmental SciencesMinzu University of ChinaBeijing 100081China State Key Laboratory of Bioactive Substance and Function of Natural Medicines Institute of Materia MedicaChinese Academy of Medical SciencesPeking Union Medical CollegeBeijing 100050China Key Laboratory of Carcinogenesis and Translational Research(Ministry of Education/Beijing) Department of Gastrointestinal OncologyPeking University Cancer Hospital&InstituteBeijing 100142China Key Laboratory of Carcinogenesis and Translational Research(Ministry of Education) Center of Drug Clinical TrialPeking University Cancer Hospital and InstituteBeijing 100142China Beijing Engineering Research Center of Food Environment and Public Health Minzu University of ChinaBeijing 100081China Key laboratory of Ethnomedicine of Ministry of Education School of PharmacyMinzu University of ChinaBeijing 100081China Key Laboratory of Carcinogenesis and Translational Research(Ministry of Education) Department of BioBankPeking University Cancer Hospital and InstituteBeijing 100142China Pharmacy Department of Beijing Chao–Yang Hospital Capital Medical UniversityBeijing 100020China

Gastric Carcinoma(GC)is a highly fatal malignant tumor with a poor *** elevated mortality rates are primarily due to its proclivity for late-stage *** the metabolic interactions between tumor microenvironment and the systemic bloodstream could help to clearly understand the mechanisms and identify precise biomarkers of tumor growth,proliferation,and *** this study,an integrative approach that combines plasma metabolomics with mass spectrometry imaging of tumor tissue was developed to investigate the global metabolic landscape of GC tumorigenesis and *** results showed that the oxidized glutathione to glutathione ratio(GSSH/GSH)became increased in non-distal metastatic GC(M0),which means an accumulation of oxidative stress in tumor ***,it was found that the peroxidation of polyunsaturated fatty acids,such as 9,10-EpOMe,9-HOTrE,etc.,were accelerated in both plasma and tumor tissues of distal metastatic GC(M1).These changes were further confirmed the potential effect of CYP2E1 and GGT1 in metastatic potential of GC by mass spectrometry imaging(MSI)and immunohistochemistry(IHC).Collectively,our findings reveal the integrated multidimensional metabolomics approach is a clinical useful method to unravel the bloodtumor metabolic crosstalk,illuminate reprogrammed metabolic networks,and provide reliable circulating biomarkers.

关键词： metabolomics Spatial-resolved metabolomics Gastric cancer Blood-tumor metabolic crosstalk Lipid peroxidation

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Ascorbic acid and prunasin,two candidate biomarkers for endodormancy release in almond flower buds identified by a nontargeted metabolomic study

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Horticulture Research 2020年第1期7卷 117-129页

作者： Jesús Guillamón Guillamón Ángela Sánchez Prudencio JoséEnrique Yuste Federico Dicenta Raquel Sánchez-Pérez Department of Plant Breeding.CEBAS-CSIC Campus Universitario de Espinardo30100 EspinardoSpain metabolomics platform of CEBAS-CSIC Campus Universitario de Espinardo30100 EspinardoSpain

Temperate fruit trees belonging to Prunus species have the ability to suspend(induce dormancy)and resume growth periodically in response to environmental and seasonal *** release requires the long-term accumulation of *** accumulation of cultivar-specific chill requirements,plants enter the state of ecodormancy,which means the ability to grow has been restored,depending on the fulfilment of heat *** many different metabolic pathways are implicated in endodormancy release,we have performed a metabolomic analysis,using the ultra-high-performance liquid chromatography–quadrupole time-of-flying(UPLC–QToF)*** assayed flower buds in different stages of endodormancy in four almond cultivars with different flowering times:the extra-early Desmayo Largueta,the late Antoñeta,the extra-late Penta,and the ultra-late *** orthogonal projection to latent-structure discriminant-analysis model was created to observe differences between endodormant and ecodormant flower *** metabolites showing the most significant variation were searched against the Metlin,HMDB,and KEGG libraries,which allowed us to identify 87 *** metabolites were subsequently assigned to specific pathways,such as abscisic acid biosynthesis,phenylpropanoid biosynthesis,and D-sorbitol metabolism,among *** two metabolites that exhibited the most significant variations in all the cultivars studied with fold changes of up to 6.49 were ascorbic acid and *** the first time,these two metabolites have been proposed as potential biomarkers for endodormancy release in *** the high synteny present between the Rosaceae species,these results could be extrapolated to other important crops like peach,plum,cherry,or apricot,among others.

关键词： metabolism release crops

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metabolomics Analysis of Health Functions of Physalis Pubescens L. using by Ultra-performance Liquid Chromatography/Electrospray Ionization Quadruple Time-of-Flight Mass Spectrometry

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World Journal of Traditional Chinese Medicine 2015年第3期1卷 9-20页

作者： Hang Chu Hui Sun Guang-Li Yan Ai-Hua Zhang Chang Liu Hui Dong Xiang-Cai Meng Xi-Jun Wang National TCM Key Lab of Serum Pharmacochemistry Key Laboratory of Metabolomics and Chinmedomics Department of Pharmaceutical AnalysisHeilongjiang University of Chinese Medicine

Herbal medicines may benefit from metabolomics studies, and applying metabolomics may provide answers about which herbal interventions may be effective for individuals, which metabolic processes are triggered, and the subsequent chemical pathways of activity. Physalis pubescens L(PPL) is an herbal fruit for one year living plant and has been developed into healthy function's food. However, the mechanisms of health functions are still unclear. To comprehensively and holistically assess its anti-fatigue and antioxidant effects, a novel integrative metabolomics approach was applied. In this study, we present metabolomics analysis applying ultra performance liquid chromatography coupled to quadrupole with time-of-flight mass spectrometry(UPLC-Q/TOF-MS) to determine metabolite alterations after oral administration PPL to rats. Fifteen metabolites in urine were identified as potential biomarkers. Pattern analysis of the UPLC-Q/TOF-MS data disclosed that PPL could relieve fatigue rats by ameliorating the disturbance in amino acids metabolism and energy metabolism, alleviating the oxidative stress from reactive oxygen species and the inflammatory damage, and recovering the destructed regulation. Based on these results, we demonstrated that PPL is a promising source of natural anti-fatigue and antioxidants material for use in functional foods and medicines.

关键词： metabolomics Physalis pubescens L antioxidant anti-fatigue metabolic pathway biomarkers

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Chinmedomics: A Powerful Approach Integrating metabolomics with Serum Pharmacochemistry to Evaluate the Efficacy of Traditional Chinese Medicine

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Engineering 2019年第1期5卷 60-68页

作者： Ai-Hua Zhang Hui Sun Guang-Li Yan Ying Han Qi-Qi Zhao Xi-Jun Wang National Chinmedomics Research Center & Sino-America Chinmedomics Technology Collaboration Center & National TCM Key Laboratory of Serum Pharmacochemistry & Laboratory of metabolomics Department of Pharmaceutical Analysis Heilongjiang University of Chinese Medicine Harbin 150040 China

Evaluation of the efficacy of traditional Chinese medicines (TCMs) is an important prerequisite for discovering effective substances, lead compounds, and quality markers (Q markers). At present, there is an urgent need to develop a biological language that can act as abridge for the scientific elaboration of the efficacy of TCMs, and to further highlight the significant value of TCM. Chinese medicinal syndromes and formulae are two essential parts of TCM that directly relate to its efficacy. Syndromes and formulae have been taken as the research objects. The serum pharmacochemistry of the TCM approach with metabolomics were integrated to establish an innovative chinmedomics strategy, which is able to explore syndrome biomarkers and evaluate TCM efficacy in order to discover effective substances from TCMs. A great deal of concrete work in chinmedomics has already performed to bridge the gap between Chinese and Western medicine, and to provide a powerful approach to enhance the scientific value of TCM theory and clinical practice. This article summarizes the application of chinmedomics in identifying the candidate biomarkers of a syndrome and revealing the efficacy of the related formula. We also highlight the discovery of lead compounds and Q markers from TCMs.

关键词： Chinmedomics Serum pharmacochemistry of TCM Efficacy metabolomics Syndrome Biomarkers Quality markers

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Targeted metabolomics Revealed the Regulatory Role of Manganese on Small-Molecule Metabolism of Biofilm Formation in Escherichia coli

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Journal of Analysis and Testing 2020年第3期4卷 226-237页

作者： Rui Guo Haitao Lu Key Laboratory of Systems Biomedicine(Ministry of Education) Shanghai Center for Systems BiomedicineShanghai Jiao Tong UniversityShanghai 200240China Laboratory for Functional metabolomics Science Shanghai Jiao Tong UniversityShanghai 200240China

Biofilms are special microbial communities produced by many microorganisms,such as bacteria,viruses,and *** enable the microorganisms to possess the capacity against a diversity of stressful ***,biofilm formation often causes tough challenges in clinical infections,food quality,and environmental issues,however,the formation mechanism of biofilms are still incompletely understood which seriously impedes the development of new strategies to eradicate biofilms in different *** this study,we sought to explore the regulatory role of manganese(Mn^(2+))on small-molecule metabo-lism of biofilm formation in Escherichia coli(***).Using structural imaging assay combined with precision-targeted metabolomics method,to investigate how biofilm formation responded to various concentrations of Mn^(2+),we found that Mn^(2+)could inhibit biofilm formation through the regulation of phenotypic morphology and metabolic ***,our work discovered 16 differential functional metabolites and associated three metabolic pathways involving glycolysis,TCA cycle,and tryptophan metabolism that were changed mostly by Mn^(2+)during biofilm formation,which can differentiate biofilms from the relevant planktonic ***,this study demonstrated that Mn^(2+)can inhibit biofilm formation to regulate metabolic reprogramming and micro-structure,such effort provides novel insight into the regulation of metabolic features of biofilm formation,which enables the development of new strategies to eradicate biofilm formation for addressing the challenging problems in different areas by targeting the regulation of Mn^(2+)to the biosynthesis and expres-sions of functional metabolites produced by different microorganisms.

关键词： Biofilms Manganese Precision-targeted metabolomics Imaging assay Small-molecule metabolism Escherichia coli

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Mass Spectrometry-Based Targeted metabolomics Revealed the Regulatory Roles of Magnesium on Biofilm Formation in Escherichia coli by Targeting Functional Metabolites

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Journal of Analysis and Testing 2022年第2期6卷 89-97页

作者： Tian-Yu Wang Rui Guo Long-Long Hu Jing-Jing Liu Hai-Tao Lu Key Laboratory of Systems Biomedicine(Ministry of Education) Shanghai Center for Systems BiomedicineShanghai Jiao Tong UniversityShanghai 200240China Laboratory for Functional metabolomics Science Shanghai Jiao Tong UniversityShanghai 200240China

Biofi lms often impose harmful infl uences in many niches involving food contamination,antibiotics resistance,and environmental ***,eradicating biofi lms remains diffi cultly because the formation mechanism of biofi lms is still incompletely clarifi ***,we attempted to explore the regulatory role of magnesium(Mg^(2+))on biofi lm formation in Escherichia coli(***)using phenotype visualization with targeted metabolomics *** found that Mg^(2+)could exert signifi cant infl uence on biofi lm formation with a concentration dependency by regulating phenotypic morphology and triggering metabolic modifi cations of biofi *** imaging revealed that increasing concentration of Mg^(2+)gradually inhibited biofi lm formation,Mg^(2+)was observed to restore the microstructure of *** strain in biofi lms to that in the relevant planktonic *** addition,our metabolomics analysis characterized 20 diff erential metabolites and associated two metabolic pathways including nucleotide metabolism and amino acid metabolism that were notably modifi ed during biofi lm formation under the treatments of varied Mg^(2+).Altogether,our work provides a novel insight into the infl uence of Mg^(2+)on biofi lm formation at a metabolic level,which is implicated in the novel solution to disturb biofi lm formation through the regulation of Mg^(2+)and functional metabolite interaction.

关键词： Biofilms Magnesium Precision-targeted metabolomics Metabolic modifications Escherichia coli

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Suppression of pheromone biosynthesis and mating behavior by RNA interference of pheromone gland-specific fatty acyl reductase in Maruca vitrata

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Insect Science 2022年第4期29卷 1135-1144页

作者： Wook Hyun Cha Dae-Weon Lee Department of Biosafety Kyungsung UniversityBusanRepublic of Korea metabolomics Research Center for Functional Materials Kyungsung UniversityBusanRepublic of Korea

In moths,various enzymes,such as fatty acid synthases,fatty acyl desaturases,and fatty acyl reductases(FARs),are involved in pheromone *** particular,pheromone gland-specific FAR(pgFAR)plays an important role in converting the functional group from carboxylic to alcohol during pheromone biosynthesis.A novel pgFAR of Maruca vitrata,Mvi-pgFAR,was identified through transcriptome sequencing of its pheromone *** investigate the involvement of Mvi-pgFAR in pheromone biosynthesis,Mvi-pgFAR was cloned from the pheromone gland and suppressed by RNA interference(RNAi).Mvi-pgFAR harbored several conserved motifs related to NAD(P)H-binding,N-glycosylation,and adenosine/guanosine triphosphate *** analysis revealed that Mvi-pgFAR with other lepidopteran pgFARs formed an independent ***-pgFAR was specifically expressed only in the pheromone *** real-time polymerase chain reaction showed that the diurnal expression levels of Mvi-pgFAR in the pheromone gland were the highest at 2 h before the *** primarily confirming Mvi-pgFAR suppression by RNAi,(E,E)-10,12-hexadecadienal(E10E12-16:Ald),a major sex pheromone component,was quantified by gas *** Mvi-pgFAR was successfully suppressed,E10E12-16:Ald production was reduced by up to half of that of the control,and the mating rate was subsequently *** results demonstrate that Mvi-pgFAR downregulation can suppress mating behavior by changing the relative sex pheromone component ratio,suggesting that Mvi-pgFAR can be used as a novel control target.

关键词： (EE)-10,12-hexadecadienal gas chromatography Maruca viruta pgFAR RNAi sex pheromone

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Co-culture of tumor spheroids and monocytes in a collagen matrix-embedded microfluidic device to study the migration of breast cancer cells

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Chinese Chemical Letters 2019年第2期30卷 331-336页

作者： Tianying Yuan Dan Gao Shangfu Li Yuyang jiang State Key Laboratory of Chemical Oncogenomics The Graduate School at Shenzhen Tsinghua University Key Laboratory of metabolomics at Shenzhen School of Medicine Tsinghua University

Recapitulating the tumor microenvironment is a major challenge in the development of in vitro tumor model for the study of cancer biology and therapeutic treatments. 3D multicellular tumor spheroids (MCTS) have been used as reliable models of mimicking in vivo solid tumors. Macrophages and extracellular matrix (ECM), regarded as two key factors of the tumor microenvironment, play significant roles in tumor progression and drug resistance. In order to investigate their effects on tumor cell migration, a microfluidic chip-based 3D breast cancer model was developed by co-culturing monodisperse MCTS with monocytes in 3 D collagen matrix. A reversible bonding technique was employed for the fabrication of the microfluidic chip, which made it easier for MCTS formation and tailoring the MCTS co-culture conditions. When co-culturing monocytes with low invasive T47D spheroids or high invasive MD-MBA-231 spheroids, we found that T47 D cells with the stimulation of macrophage colony-stimulating factor (M-CSF) and MD-MBA-231 cells could polarize monocytes into tumor-associated macrophages (TAMs). The increased stiffness via increasing collagen concentration decreased tumor cell migration, whereas the presence of TAMs enhanced the migration ability of ***, M-CSF-activated TAMs promoted the migration of T47 D tumor cells via the regulation of TGFβ1. Overall, this 3D co-culture microfluidic model may be useful for studying tumor progress and may offer a reliable and low-cost method for evaluation of drug efficiency.

关键词： Tumor microenvironment Multicellular tumor spheroids Tumor-associated macrophages Extracellular matrix stiffness Microfluidics

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Regulation of Actin Dynamics in Pollen Tubes:Control of Actin Polymer Level

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Journal of Integrative Plant Biology 2009年第8期51卷 740-750页

作者： Naizhi Chen Xiaolu Qu Youjun Wu Shanjin Huang Center for Signal Transduction and metabolomics Key Laboratory of Photosynthesis and Environmental Molecular Physiology Institute of Botany the Chinese Academy of Sciences Beijing 100093 China

Actin cytoskeleton undergoes rapid reorganization in response to internal and external cues. How the dynamics of actin cytoskeleton are regulated, and how its dynamics relate to its function are fundamental questions in plant cell biology. The pollen tube is a well characterized actin-based cell morphogenesis in plants. One of the striking features of actin cytoskeleton characterized in the pollen tube is its surprisingly low level of actin polymer. This special phenomenon might relate to the function of actin cytoskeleton in pollen tubes. Understanding the molecular mechanism underlying this special phenomenon requires careful analysis of actin-binding proteins that modulate actin dynamics directly. Recent biochemical and biophysical analyses of several highly conserved plant actin-binding proteins reveal unusual and unexpected properties, which emphasizes the importance of carefully analyzing their action mechanism and cellular activity. In this review, we highlight an actin monomer sequestering protein, a barbed end capping protein and an F-actin severing and dynamizing protein in plant. We propose that these proteins function in harmony to regulate actin dynamics and maintain the low level of actin polymer in pollen tubes.

关键词： actin-binding proteins actin dynamics pollen tube

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Axon regeneration:membrane expansion and lipidomics

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Neural Regeneration Research 2022年第5期17卷 989-990页

作者： Sean Meehan Sanjoy K.Bhattacharya Graduate Program in Molecular and Cellular Pharmacology Miami Integrative Metabolomics Research CenterBascom Palmer Eye InstituteUniversity of MiamiMiamiFLUSA

Axon regeneration requires protein synthesis and membrane *** presence of granular material was discovered in the perikaryon of neurons but not axons using Nissl staining(Gomes,2019).This is one of the characteristic ... 详细信息

关键词： expansion. expansion regeneration

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