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Genomic characterization of peritoneal lavage cytology-positive gastric cancer

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Chinese Journal of Cancer Research 2024年第1期36卷 66-77页

作者： Zhouqiao Wu Tingfei Gu Changxian Xiong Jinyao Shi Jingpu Wang Ting Guo Xiaofang Xing Fei Pang Ning He Rulin Miao Fei Shan Yuan Zhou Ziyu Li Jiafu Ji key laboratory of Carcinogenesis and Translational Research(ministry of education/Beijing) Gastrointestinal Cancer CenterPeking University Cancer Hospital&InstituteBeijing 100142China Department of Biomedical Informatics Department of Physiology and PathophysiologyCenter for Noncoding RNA MedicineMOE Key Lab of Cardiovascular SciencesSchool of Basic Medical SciencesPeking UniversityBeijing 100191China State key laboratory of Holistic Integrative Management of Gastrointestinal Cancers Beijing Key Laboratory of Carcinogenesis and Translational ResearchGastrointestinal Cancer CenterPeking University Cancer Hospital&InstituteBeijing 100142China

Objective: Positive peritoneal lavege cytology(CY1) gastric cancer is featured by dismal prognosis, with high risks of peritoneal metastasis. However, there is a lack of evidence on pathogenic mechanism and signature of CY1and there is a continuous debate on CY1 therapy. Therefore, exploring the mechanism of CY1 is crucial for treatment strategies and targets for CY1 gastric ***: In order to figure out specific driver genes and marker genes of CY1 gastric cancer, and ultimately offer clues for potential marker and risk assessment of CY1, 17 cytology-positive gastric cancer patients and 31matched cytology-negative gastric cancer patients were enrolled in this study. The enrollment criteria were based on the results of diagnostic laparoscopy staging and cytology inspection of exfoliated cells. Whole exome sequencing was then performed on tumor samples to evaluate genomic characterization of cytology-positive gastric ***: Least absolute shrinkage and selection operator(LASSO) algorithm identified 43 cytology-positive marker genes, while Mut Sig CV identified 42 cytology-positive specific driver genes. CD3G and CDKL2 were both driver and marker genes of CY1. Regarding mutational signatures, driver gene mutation and tumor subclone architecture, no significant differences were observed between CY1 and negative peritoneal lavege cytology(CY0).Conclusions: There might not be distinct differences between CY1 and CY0, and CY1 might represent the progression of CY0 gastric cancer rather than constituting an independent subtype. This genomic analysis will thus provide key molecular insights into CY1, which may have a direct effect on treatment recommendations for CY1and CY0 patients, and provides opportunities for genome-guided clinical trials and drug development.

关键词： Cytology gastric carcinoma peritoneal metastasis whole exome sequencing

Electrochemical protein biosensors for disease marker detection:progress and opportunities

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Microsystems & Nanoengineering 2024年第3期10卷 1-20页

作者： Lanpeng Guo Yunong Zhao Qing Huang Jing Huang Yanbing Tao Jianjun Chen Hua-Yao Li Huan Liu School of Integrated Circuits Wuhan National Laboratory for OptoelectronicsOptics Valley LaboratoryHuazhong University of Science and TechnologyWuhan 430074China key laboratory of Intelligent Computing and Signal Processing of ministry of education School of Integrated CircuitsAnhui UniversityHefei 230601China School of Optoelectronic Materials and Technology Jianghan UniversityWuhan 430056China Department of Otorhinolaryngology Union HospitalTongji Medical CollegeHuazhong University of Science and Technology1277 Jiefang AvenueWuhan 430022China Wenzhou Institute of Advanced Manufacturing Technology Huazhong University of Science and TechnologyWenzhou 325000China

The development of artificial intelligence-enabled medical health care has created both opportunities and challenges for next-generation biosensor *** are extensively used as biological macromolecular markers in disease diagnosis and the analysis of therapeutic *** protein biosensors have achieved desirable specificity by using the specific antibody–antigen binding principle in ***,the active centers of protein biomarkers are surrounded by a peptide matrix,which hinders charge transfer and results in insufficient sensor ***,electrode-modified materials and transducer devices have been designed to increase the sensitivity and improve the practical application prospects of electrochemical protein *** this review,we summarize recent reports of electrochemical biosensors for protein biomarker *** highlight the latest research on electrochemical protein biosensors for the detection of cancer,viral infectious diseases,inflammation,and other *** corresponding sensitive materials,transducer structures,and detection principles associated with such biosensors are also addressed ***,we present an outlook on the use of electrochemical protein biosensors for disease marker detection for the next few years.

关键词： diagnosis specificity Electrochemical

Genetic variant in a BaP-activated super-enhancer increases prostate cancer risk by promoting AhR-mediated FAM227A expression

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Journal of Biomedical Research 2024年第2期38卷 149-162,I0001-I0010页

作者： Lulu Fan Hao Wang Shuai Ben Yifei Cheng Silu Chen Zhutao Ding Lingyan Zhao Shuwei Li Meilin Wang Gong Cheng Department of Environmental Genomics Jiangsu Key Laboratory of Cancer BiomarkersPrevention and TreatmentCollaborative Innovation Center for Cancer Personalized MedicineSchool of Public HealthNanjing Medical UniversityNanjingJiangsu 211166China Department of Genetic Toxicology the Key Laboratory of Modern Toxicology of Ministry of EducationCenter for Global HealthSchool of Public HealthNanjing Medical UniversityNanjingJiangsu 211166China Department of Urology the First Affiliated Hospital of Nanjing Medical UniversityJiangsu Province HospitalNanjingJiangsu 210029China

Genetic variants in super-enhancers(SEs)are increasingly implicated as a disease risk-driving *** studies have reported an associations between benzo[a]pyrene(BaP)exposure and some malignant tumor ***,it is unclear whether BaP is involved in the effect of genetic variants in SEs on prostate cancer risk,nor the associated intrinsic molecular *** the current study,by using logistic regression analysis,we found that rs5750581T>C in 22q-SE was significantly associated with prostate cancer risk(odds ratio=1.26,P=7.61×10^(-5)).We also have found that the rs6001092T>G,in a high linkage disequilibrium with rs5750581T>C(r^(2)=0.98),is located in a regulatory aryl hydrocarbon receptor(AhR)motif and may interact with the FAM227A promoter in further bioinformatics *** then performed a series of functional and BaP acute exposure experiments to assess biological function of the genetic variant and the target ***,the rs6001092-G allele strengthened the transcription factor binding affinity to AhR,thereby upregulating FAM227A,especially upon exposure to BaP,which induced the malignant phenotypes of prostate *** current study highlights that AhR acts as an environmental sensor of BaP and is involved in the SE-mediated prostate cancer risk,which may provide new insights into the etiology of prostate cancer associated with the inherited SE variants under environmental carcinogen stressors.

关键词： super-enhancer prostate cancer genetic variants AhR BaP FAM227A

Facile Synthesis of Fe/Cr-Codoped ZnO Nanoparticles with Excellent Adsorption Performance for Various Pollutants

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Journal of Ocean University of China 2021年第2期20卷 349-360页

作者： SUN Yongkai LUO Siqi XING Jing LI Zhenjiang MENG Alan College of Electromechanical Engineering Qingdao University of Science and TechnologyQingdao 266061China Gaomi Campus Qingdao University of Science and TechnologyGaomi 266000China key laboratory of sensor analysis of tumor marker Ministry of EducationCollege of Chemistry and Molecular EngineeringQingdao University of Science and TechnologyQingdao 266042China

Adsorption is an effective and low-cost method for removing antibiotics and dyes. However, it remains a challenge to prepare an adsorbent with excellent adsorption properties for both various antibiotics and dyes. Herein, Fe/Cr-codoped ZnO with high adsorption capacity and fast adsorption rate are prepared by an environmentally friendly solvothermal method. Fe/Cr-codope ZnO with a diameter of 10–20 nm exhibits superior adsorption capacities for the antibiotics of tetracycline hydrochloride(TC-HCl)(826.45 mg g-1) and tetracycline(TC)(331.01 mg g-1), and anionic dyes of methyl orange(MO)(1023.88 mg g-1), methyl blue(MB)(726.26 mg g-1) and direct red(DR)(642.25 mg g-1). Meanwhile, it presents fast adsorption rate, it only took 30 min to reach more than 90% of the equilibrium adsorption amount for TC-HCl, TC, MO, MB and DR. The adsorption process closely fitted the Langmuir isotherm model and pseudo second-order rate equation. More importantly, simple method has been developed for separating the pollutant from the adsorbent, which not only regenerates the materials, but also completes the recovery of antibiotics and dyes, avoiding the secondary pollution. The broad-spectrum, rapid, environment-friendly and effective adsorption properties make Fe/Crcodoped ZnO a promising adsorbent for water treatments.

关键词： antibiotics dyes codoped adsorption regeneration

Antitumor effects of a novel photosensitizer-mediated photodynamic therapy and its influence on the cell transcriptome

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Oncology Research 2024年第5期32卷 911-923页

作者： JINGJING CHEN DAN WANG ZEQUN WANG MENGYUAN HAN HOUQING YIN WENTING ZHOU RIBAI YAN YAN PAN Department of Pharmacology School of PharmacyChangzhi Medical CollegeChangzhiChina2 Department of PharmacologySchool of Basic Medical SciencesHealth Science CenterPeking UniversityBeijingChina3 Beijing Key Laboratory of Tumor Systems BiologyPeking UniversityBeijingChina4 Department of PharmacologyXinjiang Medical UniversityUrumqiChina5 School of Pharmaceutical SciencesPeking UniversityBeijingChina

Photodynamic therapy(PDT)is a promising cancer *** study investigated the antitumor effects and mechanisms of a novel photosensitizer meso-5-[ρ-diethylene triamine pentaacetic acid-aminophenyl]−10,15,20-triphenyl-porphyrin(DTP)mediated PDT(DTP-PDT).Cell viability,reactive oxygen species(ROS),and apoptosis were measured with a Cell Counting Kit-8 assay,DCFH-DA fluorescent probe,and Hoechst staining,*** apoptosis-and autophagy-related proteins were examined using western *** sequencing was used to screen differentially expressed mRNAs(DERs),and bioinformatic analysis was performed to identify the major biological events after *** results show that DTP-PDT inhibited cell growth and induced ROS generation in MCF-7 and SGC7901 *** ROS scavenger N-acetyl-L-cysteine(NAC)and the P38 MAPK inhibitor SB203580 alleviated DTP-PDT-induced ***-PDT induced cell apoptosis together with upregulated Bax and downregulated Bcl-2,which could also be inhibited by NAC or *** level of LC3B-Ⅱ,a marker of autophagy,was increased by DTP-PDT.A total of 3496 DERs were obtained after *** Ontology and Kyoto Encyclopedia of Genes and Genomes analyses indicated that DERs included those involved in cytosolic ribosomes,the nuclear lumen,protein binding,cell cycle,protein targeting to the endoplasmic reticulum,and ribosomal DNA *** Ontology and Reactome enrichment analyses indicated that DERs were associated with a variety of cancers and cell cycle ***-protein interaction results demonstrated that cdk1 and rps27a ranked in the top 10 interacting ***,DTP-PDT could inhibit cell growth and induce cell apoptosis and autophagy,partly through ROS and the P38 MAPK signaling *** associated with the cell cycle,ribosomes,DNA replication,and protein binding may be the key changes in DTP-PDT-mediated cytotoxicity.

关键词： Photodynamic therapy ROS Apoptosis Autophagy Bioinformatic analysis

Synthesis of core-shell structured Au@Bi2S3 nanorod and its application as DNA immobilization matrix for electrochemical biosensor construction

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Chinese Chemical Letters 2020年第1期31卷 181-184页

作者： Feng Gao Juan Song Bin Zhang Hidekazu Tanaka Fei Gao Weiwei Qiu Qingxiang Wang Department of Chemistry and Environment Science Minnan Normal UniversityZhangzhou 363000China Department of Chemistry Graduate School of Science and EngineeringShimane UniversityMatsueShimane 690-8504Japan key laboratory of sensor analysis of tumor marker ministry of education College of Chemistry and Molecular EngineeringQingdao University of Science and TechnologyQingdao 266042China

The core-shell structured Au@Bi2S3 nanorods have been prepared through direct in-situ growth of Bi2S3 at the surface of pre-synthesized gold *** product was characterized by X-ray diffraction,transmission electron microscopy and energy-dispersive X-ray *** the obtained Au@Bi2S3 nanorods were coated onto glassy carbon electrode to act as a scaffold for fabrication of electrochemical DNA biosensor on the basis of the coordination of-NH2 modified on 5’-end of probe DNA and Au@*** characterization assays demonstrate that the Au@Bi2S3 nanorods behave as an excellent electronic transport channel to promote the electron transfer kinetics and increase the effective surface area by their nanosize *** hybridization experiments reveal that the Au@Bi2S3 matrix-based DNA biosensor is capable of recognizing complementary DNA over a wide concentration ranging from 10 fmol/L to 1 nmol/*** limit of detection was estimated to be 2 fmol/L(S/N=3).The biosensor also presents remarkable selectivity to distinguish fully complementa ry sequences from basemismatched and non-complementary ones,showing great promising in practical application.

关键词： DNA biosensor Au@Bi2S3 nanorods Electrochemical impedance spectroscopy Core-shell structure Bi^3+-N bond Probe immobilization

Flexibly regulated electrochemiluminescence of all-inorganic perovskite CsPbBr_(3)quantum dots through electron bridge to across interfaces between polar and non-polar solvents

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Chinese Chemical Letters 2021年第9期32卷 2861-2864页

作者： Nan Hao Yu Qiu Jinwen Lu Xu Han Yaqi Li Jing Qian Kun Wang School of Chemistry and Chemical Engineering Jiangsu UniversityZhenjiang 212013China key laboratory of sensor analysis of tumor marker Ministry of EducationCollege of Chemistry and Molecular EngineeringQingdao University of Science and TechnologyQingdao 266042China Science and Technology on Space Physics laboratory Beijing 10076China School of Grain Science and Technology Jiangsu University of Science and TechnologyZhenjiang 212003China

All-inorganic perovskite quantum dots(QDs)have attracted great interests due to its outstanding *** their poor stability in polar solvents seriously hampered wide applications in analytical *** this work,strong,stable and flexibly regulated the electrochemiluminescence(ECL)emission form CsPbBr(_3)QDs was successfully obtained and applied in the analysis of polar solvents through the unique structure of closed bipolar electrode(BPE).To demonstrate the feasibility,it was successfully used in the detection of tetracycline(Tc)aqueous ***(_3)QDs was immersed into organic solution in anode microcell of closed BPE while Tc aqueous solution was added into cathode *** two microcells were physically separated and would not interfere with each *** the bio-recognition event between aptamer and Tc in cathode microcell would induce the ECL signal change in anode microcell through the electrons conducted by BPE as the *** ECL emission can be flexibly regulated by environmental factors of both polar and non-polar solvents and the interface status of the *** with traditional methods to overcome the intrinsic instability in polar medium,the reported method does not need any further surface modifications,has no limitations on the targets and can provide wide development space for further deep research,which may open a new direction for the ECL sensing of CsPbBr(_3)QDs.

关键词： Electrochemiluminescence Perovskite Quantum dots Closed bipolar electrode Tetracycline

Cesium lead halide perovskite nanocrystals for ultraviolet and blue light blocking

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Chinese Chemical Letters 2019年第5期30卷 1021-1023页

作者： Guihua Huang Yipeng Huang Wei Xu Qiuhong Yao Xiaofang Liu Caifeng Ding Xi Chen Institute of Analytical Technology and Smart Instruments College of Environment and Public HealthXiamen Huaxia UniversityXiamen 361024China State key laboratory of Marine Environmental Science Xiamen UniversityXiamen 361005China Department of Anesthesiology Xiamen Maternal and Children HospitalXiamen 361003China key laboratory of sensor analysis of tumor marker Ministry of EducationCollege of Chemistry and Molecular EngineeringQingdao University of Science and TechnologyQingdao 266042China

Using cesium lead halide perovskite nanocrystals, CsPb(Cl/Br)3, as a light absorber, we report a highly effective UV and blue light blocking film. The CsPb(Cl/Br)3 nanocrystals are well dispersed in the ethyl cellulose(EC) matrix to compose a UV and blue light shielding film, and the absorption edge of the film is tunable by adjusting Cl to Br ratio using anion exchange. The CsPbCl2 Br-EC film exhibits a transmittance of 5% at 459 nm, 90% at 478 nm and 95% in the range of 500–800 nm, which makes it excellent for UV and blue light shielding. In addition, the as-prepared EC-CsPb(Cl/Br)3 film shows excellent photostability under UV irradiation. Results demonstrate that this EC-CsPb(Cl/Br)3 based materials with sharp absorbance edges, tunable blocking wavelength, and high photostability can be useful for the applications in UV and blue light blocking and optical filters.

关键词： Perovskite nanocrystals UV blocking Blue light blocking Cesium lead halide nanocrystals Tunable adsorption edge

Locked Nucleic Acid Nanomicelle with Cell-Penetrating Peptides Transmembrane Ability for Glutathione-Triggered Drug Release

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Locked Nucleic Acid Nanomicelle with Cell-Penetrating Peptid...