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Asian Agricultural Research 2014年第11期6卷 83-86页

作者： Lizhen CHEN Yu ZHENG Haiyan LUO Qingqun YAO Tropical Crops genetic resources institute of Chinese Academy of Tropical Agricultural Sciences

Taking Tropical Crops genetic resources institute( TCGRI) of Chinese Academy of Tropical Agricultural Sciences( CATAS) as an example,this paper discussed current situation of construction of sci-tech platform,analyzed... 详细信息

关键词： Sci-tech platform Current situation Existing probl

Current Situations of Competitive Scientific Research Projects for Agri-scientific Research Institutions: A Case Study of Tropical Crops genetic resources institute of Chinese Academy of Tropical Agricultural Sciences

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Asian Agricultural Research 2015年第10期7卷 77-82页

作者： Haiyan LUO Qingqun YAO Lizhen CHEN Yu ZHENG Tropical Crops genetic resources institute of Chinese Academy of Tropical Agricultural Sciences

This paper collected and arranged competitive scientific research projects undertaken by Tropical Crops genetic resources institute of Chinese Academy of Tropical Agricultural Sciences in 2003-2014. Through statistical analysis on quantity of projects,funded amount,age of person responsible,professional title of person responsible,academic degree of person responsible,research object,it discussed relevant characteristics and rules. Finally,it came up with pertinent measures and recommendations,in the hope of providing services for decision-making and scientific and technological management.

关键词： Competitive scientific research projects Current s

Fine mapping and cloning of the sterility gene Bra2Ms in nonheading Chinese cabbage(Brassica rapa ***)

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Journal of Integrative Agriculture 2024年第4期23卷 1195-1204页

作者： Liping Song Xia Li Liguang Tang Chuying Yu Bincai Wang Changbin Gao Yanfeng Xie Xueli Zhang Junliang Wang Chufa Lin Aihua Wang Wuhan Vegetable Research institute Wuhan Academy of Agricultural SciencesWuhan 430345China Biotechnology and genetic resources institute Yunnan Academy of Agricultural SciencesKunming 650000China

The application of a male-sterile line is an ideal approach for hybrid seed production in non-heading Chinese cabbage(Brassica rapa ***).However,the molecular mechanisms underlying male sterility in *** are still largely *** previously obtained the natural male sterile line WS24-3 of non-heading Chinese cabbage and located the male sterile locus,Bra2Ms,on the A2 *** observations revealed that the male sterility of WS24-3 resulted from disruption of the meiosis process during pollen *** mapping of Bra2Ms delimited the locus within a physical distance of about 129 kb on the A2 chromosome of *** Bra039753 gene encodes a plant homeodomain(PHD)-finger protein and is considered a potential candidate gene for ***039753 was significantly downregulated in sterile line WS24-3 compared to the fertile line at the meiotic anther *** analysis of Bra039753 identified a 369 bp fragment insertion in the first exon in male sterile plants,which led to an amino acid insertion in the Bra039753 *** addition,the 369 bp fragment insertion was found to cosegregate with the male sterility *** study identified a novel locus related to male sterility in non-heading Chinese cabbage,and the molecular marker obtained in this study will be beneficial for the marker-assisted selection of excellent sterile lines in non-heading Chinese cabbage and other Brassica crops.

关键词： non-heading Chinese cabbage male sterility Bra2Ms fine mapping PHD-finger protein

OsEIL1 and OsEIL2,two master regulators of rice ethylene signaling,promote the expression of ROS scavenging genes to facilitate coleoptile elongation and seedling emergence from soil

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Plant Communications 2024年第3期5卷 93-105页

作者： Jinzhu Qiao Ruidang Quan Juan Wang Yuxiang Li Dinglin Xiao Zihan Zhao Rongfeng Huang Hua Qin Biotechnology Research institute Chinese Academy of Agricultural SciencesBeijing 100081China National Key Facility of Crop Gene resources and genetic Improvement Beijing 100081China

Successful emergence from the soil is a prerequisite for survival of germinating seeds in their natural *** rice,coleoptile elongation facilitates seedling emergence and establishment,and ethylene plays an important role in this ***,the underlying regulatory mechanism remains largely ***,we report that ethylene promotes cell elongation and inhibits cell expansion in rice coleoptiles,result-ing in longer and thinner coleoptiles that facilitate seedlings emergence from the *** analysis showed that genes related to reactive oxygen species(ROS)generation are upregulated and genes involved in ROS scavenging are downregulated in the coleoptiles of ethylene-signaling *** investiga-tions showed that soil coverage promotes accumulation of ETHYLENE INSENSITIVE 3-LIKE 1(OsEIL1)and OsEIL2 in the upper region of the coleoptile,and both OsEIL1 and OsEIL2 can bind directly to the promoters of the GDP-mannose pyrophosphorylase(VTC1)gene OsVTC1-3 and the peroxidase(PRX)genes OsPRX37,OsPRX81,OsPRX82,and OsPRX88 to activate their *** leads to increased ascorbic acid content,greater peroxidase activity,and decreased ROS accumulation in the upper region of the *** of ROS accumulation promotes coleoptile growth and seedling emergence from *** deepen our understanding of the roles of ethylene and ROS in controlling coleoptile growth,and this information can be used by breeders to produce rice varieties suitable for direct seeding.

关键词： ethylene ROS coleoptile growth emergence rate rice

Fine-mapping and primary analysis of candidate genes associated with seed coat color in mung bean(Vigna radiata L.)

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Journal of Integrative Agriculture 2024年第8期23卷 2571-2588页

作者： Qian Wang Huimin Cao Jingcheng Wang Zirong Gu Qiuyun Lin Zeyan Zhang Xueying Zhao Wei Gao Huijun Zhu Hubin Yan Jianjun Yan Qingting Hao Yaowen Zhang College of Agronomy Shanxi Agricultural UniversityTaiyuan 030031China 2 Tropical Crops genetic resources institute Chinese Academy of Tropical Agricultural SciencesHaikou 571101China

Seed coat color affects the appearance and commodity quality of mung beans(Vigna radiata L.).The substances that affect mung bean seed coat color are mainly flavonoids,which have important medicinal *** the seed coat color gene in mung beans would facilitate the development of new varieties and improve their *** this study,an F2 mapping population consisting of 546 plants was constructed using Jilv9(black seed coat)and BIS9805(green seed coat).Using bulk segregated analysis(BSA)sequencing and kompetitive allele-specific PCR(KASP)markers,the candidate region related to seed coat color was finally narrowed to 0.66 Mb on chromosome(Chr.)4 and included eight candidate *** transcriptome and metabolome analyses showed that three of the eight candidate genes(LOC106758748,LOC106758747,and LOC106759075)were differentially expressed,which may have caused the differences in flavonoid metabolite content between Jilv9 and *** findings can provide a research basis for cloning the genes related to seed coat color and accelerate molecular markerassisted selection breeding in mung beans.

关键词： mung bean seed coat color bulk segregated analysis sequencing transcriptome metabolism flavonoids

UDP-glucosyltransferase 71C4 controls the flux of phenylpropanoid metabolism to shape cotton seed development

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Plant Communications 2024年第8期5卷 157-171页

作者： Yiwen Cao Zegang Han Zhiyuan Zhang Lu He Chujun Huang Jinwen Chen Fan Dai Lisha Xuan Sunyi Yan Zhanfeng Si Yan Hu Tianzhen Zhang Zhejiang Provincial Key Laboratory of Crop genetic resources the Advanced Seed InstitutePlant Precision Breeding AcademyCollege of Agriculture and BiotechnologyZhejiang UniversityHangzhouChina Hainan institute Zhejiang UniversitySanyaChina

Seeds play a crucial role in plant reproduction,making it essential to identify genes that affect seed devel*** this study,we focused on UDP-glucosyltransferase 71C4(UGT71C4)in cotton,a member of the glycosyltransferase family that shapes seed width and length,thereby influencing seed index and seed cotton *** of UGT71C4 results in seed enlargement owing to its glycosyltransferase activity on flavonoids,which redirects metabolic flux from lignin to flavonoid *** shift promotes cell proliferation in the ovule via accumulation of flavonoid glycosides,significantly enhancing seed cotton yield and increasing the seed index from 10.66 g to 11.91 *** contrast,knockout of UGT71C4 leads to smaller seeds through activation of the lignin metabolism pathway and redirection of metabolic flux back to lignin *** redirection leads to increased ectopic lignin deposition in the ovule,inhibiting ovule growth and development,and alters yield components,increasing the lint percentage from 41.42%to 43.40%and reducing the seed index from 10.66 g to 8.60 *** research sheds new light on seed size development and reveals potential pathways for enhancing seed yield.

关键词： UDP-glucosyltransferase seed development phenylpropanoid metabolism gene editing

Genome-wide association study of seedling nitrogen-use efficiency-associated traits in common wheat(Triticum aestivum L.)

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The Crop Journal 2024年第1期12卷 222-231页

作者： Huawei Shi Weichong Wang Lifeng Gao Jirong Wu Chengmei Hu Huishu Yan Yugang Shi Ning Li Youzhi Ma Yongbin Zhou Zhaoshi Xu Jun Chen Wensi Tang Kai Chen Daizhen Sun Yuxiang Wu Ming Chen College of Agriculture Shanxi Agricultural UniversityJinzhong 030801ShanxiChina National Key Facility for Crop Gene resources and genetic Improvement Key Laboratory of Biology and Genetic Improvement of Triticeae CropsMinistry of AgricultureInstitute of Crop SciencesChinese Academy of Agricultural SciencesBeijing 100081China

Nitrogen(N)fertilizer application is essential for crop-plant growth and *** genetic loci associated with N-use efficiency(NUE)could increase wheat yields and reduce environmental pollution caused by *** subjected a panel of 389 wheat accessions to N and chlorate(a nitrate analog)treatments to identify quantitative trait loci(QTL)controlling NUE-associated traits at the wheat seedling *** the panel with a 660K single-nucleotide polymorphism(SNP)array,we identified 397 SNPs associated with N-sensitivity index and chlorate inhibition *** SNPs were merged into 49 QTL,of which eight were multi-environment stable QTL and 27 were located near previously reported QTL.A set of 135 candidate genes near the 49 QTL included TaBOX(F-box family protein)and TaERF(ethylene-responsive transcription factor).A Tabox mutant was more sensitive to low-N stress than the wild-type *** developed two functional markers for Hap 1,the favorable allele of TaBOX.

关键词： Wheat NUE Genome-wide association study Nitrogen sensitive index Chlorate inhibition rate

Genome-wide identification of the pectate lyase(PEL)gene family members in Malvaceae,and their contribution to cotton fiber quality

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Journal of Integrative Agriculture 2024年第10期23卷 3264-3282页

作者： Qian Deng Zeyu Dong Zequan Chen Zhuolin Shi Ting Zhao Xueying Guan Yan Hu Lei Fang Zhejiang Provincial Key Laboratory of Crop genetic resources the Advanced Seed InstituteCollege of Agriculture andBiotechnologyZhejiang UniversityHangzhou 300058China Hainan institute Zhejiang UniversitySanya 572025China

Pectin is a major constituent of the plant cell *** lyase(PEL,EC 4.***.2.2)uses anti-β-elimination chemistry to cleave theα-1,4 glycosidic linkage in the homogalacturonan region of ***,limited information is available on the comprehensive and evolutionary analysis of PELs in the *** this study,we identified 597PEL genes from 10 Malvaceae *** and motif analyses revealed that these PELs are classified into six subfamilies:Clades I,II,III,IV,Va,and *** two largest subfamilies,Clades I and II,contained 237 and222 PEL members,*** members of Clades Va and Vb only contained four or five motifs,far fewer than the other *** duplication analysis showed that segmental duplication played a crucial role in the expansion of the PEL gene family in Gossypium *** PELs from Clades I,IV,Va,and Vb were expressed during the fiber elongation stage,but nearly all PEL genes from Clades II and III showed no expression in any of the investigated fiber developmental *** further performed single-gene haplotype association analysis in 2,*** accessions and 229 *** ***,14 PELs were significantly associated with fiber length and strength traits in *** with superior fiber quality,while only eight GhPEL genes were found to be significantly associated with fiber quality traits in *** findings provide important information for further evolutionary and functional research on the PEL gene family members and their potential use for fiber quality improvement in cotton.

关键词： Malvaceae pectate lyase(PEL) Gossypium species fiber quality

Strategies for Dissecting the genetic Driving of Conserved Noncoding-Elements for Evolutionary Development of the Corpus Callosum

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Neuroscience Bulletin 2024年第7期40卷 1025-1027页

作者： Yaxin Ye Boxing Jin Hao W.Zhang Nengyin Sheng State Key Laboratory of genetic resources and Evolution Key Laboratory of Animal Models and Human Disease Mechanisms of Yunnan ProvinceKunming Institute of ZoologyChinese Academy of SciencesKunming 650201China Kunming College of Life Science University of Chinese Academy of SciencesKunming 650201China Center for Excellence in Animal Evolution and genetics Chinese Academy of SciencesKunming 650201China

With the efforts in developmental biology and neuroscience during the past several decades,our knowledge has been significantly advanced about the genetic,cellular,and molecular mechanisms underlying brain development and ***,we should keep in mind that the human brain is the product of complex evolutionary processes,and there is a trade-off between brain evolution and neurological disorders[1].

关键词： function. neurological knowledge

Natural variations of HvSRN1 modulate the spike rachis node number in barley

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Plant Communications 2024年第1期5卷 148-163页

作者： Chaofeng Fan Dongdong Xu Chunchao Wang Zhaoyan Chen Tingyu Dou Dandan Qin Aikui Guo Meng Zhao Honghong Pei Mengwei Zhao Renxu Zhang Ke Wang Jing Zhang Zhongfu Ni Ganggang Guo Key Laboratory of Grain Crop genetic resources Evaluation and Utilization(MARA) The National Key Facility for Crop Gene Resources and Genetic ImprovementInstitute of Crop SciencesChinese Academy of Agricultural Sciences(ICS-CAAS)Beijing 100081China Hainan Yazhou Bay Seed Laboratory Sanya 572025China institute of Industrial Crops Shandong Academy of Agricultural SciencesJinan 250100China Key Laboratory of Crop Heterosis and Utilization Beijing Key Laboratory of Crop Genetic ImprovementChina Agricultural UniversityBeijing 100193China Key Laboratory for Crop Molecular Breeding of Ministry of Agriculture and Rural Affairs Institute of Food CropsHubei Academy of Agricultural SciencesWuhan 430064China

Grain number,one of the major determinants of yield in Triticeae crops,is largely determined by spikelet number and spike rachis node number(SRN).Here,we identified three quantitative trait loci(QTLs)for SRN using 145 recombinant inbred lines derived from a barley R90/1815D ***1,the major-effect QTL,was mapped to chromosome 2H and explained up to 38.77%of SRN ***-based cloning revealed that qSRN1 encodes the RAWUL domain-containing protein *** analysis revealed that two key SNPs in the HvSRN1 promoter region(-2 kb upstream of the transcription start site)affect the transcript level of HvSRN1 and contribute to variation in *** to its orthologous proteins OsLAX2 and ZmBA2,HvSRN1 showed protein–protein interactions with HvLAX1,suggesting that the LAX2–LAX1 model for spike morphology regulation may be conserved in Poaceae ***-Cas9-induced HvSRN1 mutants showed reduced SRN but increased grain size and weight,demonstrating a trade-off *** results shed light on the role of HvSRN1 variation in regulating the balance between grain number and weight in barley.

关键词： barley fine-mapping grain number kernel weight