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4-Hydroxy-2-Oxoglutaric Acid,A KeyMetabolite Involved in Trypsin-Regulation of Arginine Metabolism in Hylocereus undatus during Storage

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Phyton-International Journal of Experimental Botany 2024年第5期93卷 885-900页

作者： Bairu Li Jingyu Jia Hemin Wang Jiaju Sun Enyan Chen Xin Li College of food and Bioengineering Henan University of Science and TechnologyLuoyang471023China Henan engineering Research Center of food Microbiology Luoyang471023China National Demonstration Center for Experimental food Processing and Safety Education Luoyang471000China

Trypsin,a novel superoxide scavenger,significantly enhances the storage quality of Hylocereus undatus(H.undatus).To elucidate the preservation mechanism of trypsin on H.undatus,a widely targeted metabolomic analysis,and transcriptomics analysis were conducted.Firstly,a total of 453 metabolites were identified,with organic acids and their derivatives constituting the largest proportion(25%).Amino acids and their metabolites,prominent among organic acids,were further analyzed.Among them,73 metabolites were associated with amino acids,and 37 exhibited significant differences.The most enriched Kyoto Encyclopedia of Genes and Genomes(KEGG)pathway was arginine biosynthesis(map00220),with polyamine metabolites showing the most pronounced differences,particularly spermine(FC=1.7594).Compared with the control group,4-hydroxy-2-oxoglutaric acid was significantly upregulated(FC=2.117)in the process of spermine biosynthesis.Furthermore,the results of Gene Ontology(GO)and KEGG enrichment analysis of the H.undatus transcriptome profile revealed that trypsin treatment led to 187 differentially expressed genes associated with arginine.Both GO and KEGG analyses exhibited significant enrichment in the spermine biosynthetic process(GO:0006597)(map:00220)within the arginine biosynthesis pathway.Moreover,most enzymes and metabolites within the spermine biosynthesis pathway in H.undatus were upregulated.The results of the PPI network highlighted that ADC,SPDS,and SAMDC,among others,were pivotal proteins involved in trypsin-regulated arginine metabolism and spermine synthesis.This study revealed that trypsin could significantly delay postharvest senescence of H.undatus at room temperature.This effect might be attributed to trypsin triggering the synthesis of 4-hydroxy-2-oxoglutaric acid in the fruit peel,thereby promoting the biosynthesis of spermine and other polyamines.

关键词： Trypsin arginine transcriptomics widely targeted metabolomics

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Parametric investigation on the novel and cost-effective nano fly ash impregnated geopolymer system for sustainable construction

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Frontiers of Structural and Civil engineering 2024年第2期18卷 170-183页

作者： R.MOHANA S.M.Leela BHARATHI department of Civil engineering Mepco Schlenk Engineering CollegeSivakasi 626123India

The hazardous environmental effects of greenhouse gas emissions and climate change demand alternative sources for cementitious materials in the construction industry.The development of geopolymer structures provides a way of producing 100%cement-free construction.In this research work,a novel and simple way of deriving nano particles from waste fly ash particles is promoted.The effect of adding the synthesized nano fly ash particles as a filler medium in geopolymer mortars was investigated by considering strength and durability properties.Parameter optimization was done by using regression analysis on the geopolymer mortar and the impact of adding nano fly ash particles was studied by varying different percentages of addition ranging from 0 to 7.5%by weight of binder content.From the results,it was observed that 1%nano fly ash acted not only as a filler but also as nano-sized precursors of the polymerization process,resulting in denser geopolymer medium.This can explain the extraordinary gain in strength of 72.11 MPa as well as the denser core with negligible level of chloride ion penetration,making the material suitable for the development of structures susceptible to marine environment.

关键词： geopolymer nano fly ash chloride ion penetration durability polymerization fillers

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Integrated metabolomic and transcriptome analyses reveal the regulatory mechanisms of partridge tea phenolics-rich extracts on type 2 diabetes mice

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food Science and Human Wellness 2024年

作者： Ruyan Fan Songjie Li Youjing Wei Yingxin Liu Lu Wang School of food Science and engineering Hainan University Key Laboratory of food Nutrition and Functional food of Hainan Province Hainan University

Partridge tea (Mallotus fortians Muell-Arg)， an important and widely consumed substitute tea in Hainan， possessed multi-biological activities. This study investigated the composition and content of phenolics-rich extracts purified from partridge tea， and then explored the effect of partridge tea polyphenol extract (PTE) on glucose and lipid metabolism disorders in type 2 diabetes mellitus (T2DM) mice. The results showed that the dominant components in PTE included rutin (152.78 ± 2.93) mg/g， 3-chlorogenic acid (85.81 ± 3.48) mg/g， caffeic acid (63.78 ± 1.86) mg/g， catechin (12.10 ± 1.41) mg/g， gallic acid (5.24 ± 0.12) mg/g， kaempferitrin， ellagic acid， ferulic acid， caffeic acid methylester， and geraniin. After 6 weeks of PTE intervention， glucose tolerance， insulin resistance， and pancreatic β-cell function in T2DM mice have significantly improved. This improvement was corroborated by an increase in glucagon-like peptide-1 (GLP-1); homeostasis model assessment of β-cell function (HOMA-β)， glycogen， insulin protein expression， and reduction of insulin， glycosylated serum protein (GSP)， homeostasis model assessment-insulin resistance index (HOMA-IR)， glucagon protein expression. The supplementation of PTE also seems to alleviate the inflammatory response， as evidenced by a decrease in endotoxin and inflammatory cytokine levels. Hyperglycemia-induced mitochondrial damage is alleviated by PTE intervention. Hematoxylin-eosin staining (H & E staining) and lipid profile analysis indicate that PTE intervention can help regulate lipid metabolism disorders. In addition， the integration of metabolomics and transcriptomic analysis indicates that PTE intervention could regulate glycolipid metabolism pathways related to T2DM， including insulin， AMPK， bile acid metabolism and glutathione metabolism signaling pathways. More importantly， the validation results from reverse transcription-polymerase chain reaction (RT-PCR) confirmed that the expressions of Scd1， Fasn， Hmgcr， and Slc2a4 (related to glycolipid metabolism) were cons

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Advances in Manta Ray Foraging Optimization:A Comprehensive Survey

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Journal of Bionic engineering 2024年第2期21卷 953-990页

作者： Farhad Soleimanian Gharehchopogh Shafi Ghafouri Mohammad Namazi Bahman Arasteh department of Computer engineering Urmia BranchIslamic Azad UniversityUrmiaIran department of Computer engineering Tabriz BranchIslamic Azad UniversityTabrizIran department of Computer engineering Maybod BranchIslamic Azad UniversityMaybodIran department of Software engineering Faculty of Engineering and Natural ScienceIstinye UniversityIstanbulTurkey

This paper comprehensively analyzes the Manta Ray Foraging Optimization(MRFO)algorithm and its integration into diverse academic fields.Introduced in 2020,the MRFO stands as a novel metaheuristic algorithm,drawing inspiration from manta rays’unique foraging behaviors—specifically cyclone,chain,and somersault foraging.These biologically inspired strategies allow for effective solutions to intricate physical challenges.With its potent exploitation and exploration capabilities,MRFO has emerged as a promising solution for complex optimization problems.Its utility and benefits have found traction in numerous academic sectors.Since its inception in 2020,a plethora of MRFO-based research has been featured in esteemed international journals such as IEEE,Wiley,Elsevier,Springer,MDPI,Hindawi,and Taylor&Francis,as well as at international conference proceedings.This paper consolidates the available literature on MRFO applications,covering various adaptations like hybridized,improved,and other MRFO variants,alongside optimization challenges.Research trends indicate that 12%,31%,8%,and 49%of MRFO studies are distributed across these four categories respectively.

关键词： Manta ray foraging optimization Metaheuristic algorithms Hybridization Improved Optimization

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Chaotic Aquila Optimization Algorithm for Solving Phase Equilibrium Problems and Parameter Estimation of Semi-empirical Models

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Journal of Bionic engineering 2024年第1期21卷 486-526页

作者： Oguz Emrah Turgut Mert Sinan Turgut Erhan Kırtepe department of Industrial engineering Faculty of Engineering and ArchitectureIzmir Bakircay UniversityMenemenizmirTurkey department of Mechanical engineering Faculty of EngineeringEge UniversityBornovaizmirTurkey department of Motor Vehicles and Transportation Technologies Sirnak UniversitySirnakTurkey

This research study aims to enhance the optimization performance of a newly emerged Aquila Optimization algorithm by incorporating chaotic sequences rather than using uniformly generated Gaussian random numbers.This work employs 25 different chaotic maps under the framework of Aquila Optimizer.It considers the ten best chaotic variants for performance evaluation on multidimensional test functions composed of unimodal and multimodal problems,which have yet to be studied in past literature works.It was found that Ikeda chaotic map enhanced Aquila Optimization algorithm yields the best predictions and becomes the leading method in most of the cases.To test the effectivity of this chaotic variant on real-world optimization problems,it is employed on two constrained engineering design problems,and its effectiveness has been verified.Finally,phase equilibrium and semi-empirical parameter estimation problems have been solved by the proposed method,and respective solutions have been compared with those obtained from state-of-art optimizers.It is observed that CH01 can successfully cope with the restrictive nonlinearities and nonconvexities of parameter estimation and phase equilibrium problems,showing the capabilities of yielding minimum prediction error values of no more than 0.05 compared to the remaining algorithms utilized in the performance benchmarking process.

关键词： Aquila optimization algorithm Chaotic maps Parameter estimation Phase equilibrium Unconstrained optimization

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Exploiting sound for emerging applications of extracellular vesicles

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Nano Research 2024年第2期17卷 462-475页

作者： Zhuhao Wu Hongwei Cai Chunhui Tian Zheng Ao Lei Jiang Feng Guo department of Intelligent Systems engineering Indiana UniversityBloomingtonIN 47405USA

Extracellular vesicles are nano-to micro-scale,membrane-bound particles released by cells into extracellular space,and act as carriers of biomarkers and therapeutics,holding promising potential in translational medicine.However,the challenges remain in handling and detecting extracellular vesicles for disease diagnosis as well as exploring their therapeutic capability for disease treatment.Here,we review the recent engineering and technology advances by leveraging the power of sound waves to address the challenges in diagnostic and therapeutic applications of extracellular vesicles and biomimetic nanovesicles.We first introduce the fundamental principles of sound waves for understanding different acoustic-assisted extracellular vesicle technologies.We discuss the acoustic-assisted diagnostic methods including the purification,manipulation,biosensing,and bioimaging of extracellular vesicles.Then,we summarize the recent advances in acoustically enhanced therapeutics using extracellular vesicles and biomimetic nanovesicles.Finally,we provide perspectives into current challenges and future clinical applications of the promising extracellular vesicles and biomimetic nanovesicles powered by sound.

关键词： extracellular vesicles exosomes biomimetic nanovesicles acoustics disease diagnostics therapeutics

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Sequential alkaline-organic acid leaching process to enhance the recovery of rare earth elements from Indonesian coal fly ash

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Journal of Rare Earths 2024年第7期42卷 1366-1374页

作者： Widya Rosita Indra Perdana I Made Bendiyasa Ferian Anggara Himawan Tri Bayu Murti Petrus Agus Prasetya Isyatun Rodliyah department of Nuclear engineering and engineering Physics Faculty of EngineeringUniversitas Gadjah Mada department of Chemical engineering Faculty of EngineeringUniversitas Gadjah Mada department of Geological engineering Faculty of EngineeringUniversitas Gadjah Mada Unconventional Geo-resources Research Group Faculty of EngineeringUniversitas Gadjah Mada Center for Testing of Mineral and Coal Tekmira-Directorate General of Mineral and Coal-Ministry of Energy and Mineral Resources

In this decade,coal fly ash(CFA) is considered a potential secondary source of rare earth elements(REEs).However,most REEs in coal fly ash are encapsulated in aluminosilicate glass,making it challenging to recover them through acid leaching.In this study,a sequential alkaline-organic acid leaching was developed for the recovery of REEs from CFA.The effect of alkaline leaching using NaOH solution on the destructive ability of aluminosilicate glass,as well as the mineralogy and morphology changes of the resulting coal fly ash,was first studied.Furthermore,the effectiveness of alkaline leaching on the recovery ability of REEs through organic acid leaching was evaluated.The results show that the maximum leaching efficiency for Si and Al,which was obtained at the optimum alkaline leaching conditions,namely NaOH concentration of 10 mol/L,reaction temperature of 65℃,liquid/solid(L/S) ratio of 10 mL/g,and reaction time of 90 min,is 28% and 32%,respectively.The digestion reaction with NaOH lixiviants also causes coal fly ash to become more porous,making it advantageous in the organic acid-leaching process at the REEs recovery stage.The utilization of the desilicated residue produced from the digestion process in acid leaching effectively increases the overall REEs recovery from 32.2% to 77.6%.

关键词： Alkaline Coal fly ash Organic acid Rare earth elements

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food nutrition and toxicology targeting on specific organs in the era of single-cell sequencing

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food Science and Human Wellness 2024年第1期13卷 75-89页

作者： Xiaofei Wang Xiaowen Cheng Huiling Liu Xiaohuan Mu Hao Zheng National engineering Technology Research Center for Fruit and Vegetable Processing Key Open Laboratory of Fruit and Vegetable ProcessingMinistry of Agriculture and Rural AffairsBeijing Key Laboratory of Food Non-Thermal ProcessingCollege of Food Science and Nutritional EngineeringChina Agricultural UniversityBeijing 100083China

Due to the complex natures of dietary food components,it is difficult to elucidate how the compounds affect host health.Dietary food often selectively presents its mechanism of action on different cell types,and participates in the modulation of targeted cells and their microenvironments within organs.However,the limitations of traditional in vitro assays or in vivo animal experiments cannot comprehensively examine cellular heterogeneity and the tissue-biased influences.Single-cell RNA sequencing(sc RNA-seq)has emerged as an indispensable methodology to decompose tissues into different cell types for the demonstration of transcriptional profiles of individual cells.Sc RNA-seq applications has been summarized on three typical organs(brain,liver,kidney),and two representative immune-and tumor related health problems.The everincreasing role of sc RNA-seq in dietary food research with further improvement can provide sub-cellular information and the coupling between other cellular modalities.In this review,we propose utilizing sc RNAseq to more effectively capture the subtle and complex effects of food chemicals,and how they may lead to health problems at single-cell resolution.This novel technique will be valuable to elucidate the underlying mechanism of both the health benefits of food nutrients and the detrimental consequences food toxicants at the cellular level.

关键词： Dietary food Cellular heterogeneity Single-cell RNA sequencing food nutrients food toxicants

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Experimental arena settings might lead to misinterpretation of movement properties

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Insect Science 2024年第1期31卷 271-284页

作者： Inon Scharf Kimberley Hanna Daphna Gottlieb The George S.Wise Faculty of Life Sciences School of ZoologyTel Aviv UniversityTel AvivIsrael department of food Science Institute of Post-Harvest and Food ScienceVolcani CenterARORishon LeZionIsrael

Movement is an important animal behavior contributing to reproduction and survival.Animal movement is often examined in arenas or enclosures under laboratory conditions.We used the red flour beetle(Tribolium castaneum)to examine here the effect of the arena size,shape,number of barriers,access to the arena's center,and illumination on six movement properties.We demonstrate great differences among arenas.For example,the beetles moved over longer distances in clear arenas than in obstructed ones.Movement along the arena's perimeter was greater in smaller arenas than in larger ones.Movement was more directional in round arenas than in rectangular ones.In general,the beetles stopped moving closer to the perimeter and closer to corners(in the square and rectangular arenas)than expected by chance.In some cases,the arena properties interacted with the beetle sex to affect several movement properties.All these suggest that arena properties might also interact with experimental manipulations to affect the outcome of studies and lead to results specific to the arena used.In other words,instead of examining animal movement,we in fact examine the animal interaction with the arena structure.Caution is therefore advised in interpreting the results of studies on movement in arenas under laboratory conditions and we recommend paying attention also to barriers or obstacles in field experiments.For instance,movement along the arena's perimeter is often interpreted as centrophobism or thigmotaxis but the results here show that such movement is arena dependent.

关键词： activity centrophobism correlated random walk laboratory experiments movement ecology wall-following behavior

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Trimethylamine N-oxide generation process was influenced by the proportion and source of macronutrients in the diet

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food Science and Human Wellness 2024年第2期13卷 649-658页

作者： Chengcheng Wang Xuefeng Duan Xiaoyue Li Jinyue Yang Changhu Xue Teruyoshi Yanagita Tiantian Zhang Yuming Wang College of food Science and engineering Ocean University of ChinaQingdao 266003China Laboratory for Marine Drugs and Bioproducts Pilot National Laboratory for Marine Science and Technology(Qingdao)Qingdao 266237China Laboratory of Nutrition Biochemistry Department of Applied Biochemistry and Food ScienceSaga UniversitySaga 840-8502Japan

Trimethylamine N-oxide(TMAO)is a risk factor of various chronic diseases,which was produced by metabolism from precursors to trimethylamine(TMA)in gut and the oxidation from TMA in liver.The TMA generation was influenced by diet,mainly due to the rich TMAO precursors in diet.However,it was still unclear that the effects of different proportion and source of macronutrients in different dietary pattern on the production process of TMAO.Here,the generation of TMA from precursors and TMAO from TMA was determined after single oral choline chloride and intraperitoneal injection TMA,respectively,in mice fed with carbohydrates,proteins and fats in different proportion and sources.The results suggested that the generation of TMAO was increased by low non-meat protein and high fat via enhancing the production of TMAO from TMA,and decreased by plant protein and refined sugar via reducing TMA production from precursors in gut and TMAO transformation from TMA in liver.The high fat and high sugar diets accelerating the development of atherosclerosis did not increase the production of TMAO,the risk factor for atherosclerosis,which indicated that the dietary compositions rather than the elevated TMAO level might be a more key risk factor for atherosclerosis.

关键词： Trimethylamine N-oxide(TMAO) Trimethylamine(TMA) Dietary composition Macronutrients Gut microbiota

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