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Journal of Genetics and Genomics 2024年第1期51卷 105-108页

作者： Tianyu Lei Yue Chang Chao Yao Hong Zhang college of ecology Lanzhou UniversityLanzhouGansu 730000China Cuiying Honors college Lanzhou UniversityLanzhouGansu 730000China

Ribosome profiling(Ribo-Seg)enables genome-wide survey of translational activities at nucleotide resolution by enriching and sequencing ribosome-protected fragments(RPFs)in the cell(Ingolia et al.,2009).Based on the characteristic distribution of RPFs in Ribo-Seq,such as enrichment in open reading frames(ORFs)and three-nucleotide periodicity,many computational methods have been developed to detect translated ORFs from Ribo-Seq data(Wang et al.,2020a).

关键词： translated enable canonical

Sex-specific strategies of resource utilization and determining mechanisms of Hippophae rhamnoides in response to community succession

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Journal of Plant ecology 2024年第4期17卷 114-130页

作者： Baoli Fan Pengfei Gao Tingting Tian Nana Ding Yongkuan Wan Xianhui Zhou college of Life Science Northwest Normal UniversityLanzhou 730000China Key Laboratory of Eco-functional Polymer Materials of the Ministry of Education Lanzhou 730000China college of ecology Lanzhou UniversityLanzhou 730000China

The dioecious plant,Hippophae rhamnoides,is a pioneer species in community succession on the Qinghai-Tibet Plateau(QTP),plays great roles in various ecosystem ***,the males and females of the species differ both in their morphology and physiology,resulting in a change in the ratio of male to female plants depending on the *** further explore the functional traits critical to this sex-based distinctive response in the alpine grassland,we have surveyed the sex ratios,measured their photosynthetic parameters,height,leaf area and biomass *** results showed that(i)The males had higher Pn,light saturation point,apparent quantum efficiency,A_(max) and lower water-use efficiency(WUE),which exhibited higher utilization efficiency or tolerance to strong light,while the females indicated higher utilization efficiency for low light and *** it showed sex-specific biomass allocation patterns.(ii)*** populations across the successional stages all showed a male-biased sexual allocation,which was closely related to sex-specific WUE,Pn,root biomass/total biomass and root-crown ratio.(iii)The leaf traits of *** changed from higher N_(area),P_(area) and leaf mass per area in the early and late to lower in the middle,which meant they moved their growth strategy from resource rapid acquisition to conservation as the succession progressed.(iv)The increasing soil total phosphorus mostly contributed to regulating the sex bias of populations and variations of traits during the *** results are vital for the management of grassland degradation and restoration due to shrub encroachment on the QTP.

关键词： dioecious sex ratio shrub encroachment functional traits physiological and ecological strategies

Phylotranscriptomic discordance is best explained by incomplete lineage sorting within Allium subgenus Cyathophora and thus hemiplasy accounts for interspecific trait transition

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Plant Diversity 2024年第1期46卷 28-38页

作者： Zengzhu Zhang Gang Liu Minjie Li State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems College of EcologyLanzhou UniversityLanzhou 730000GansuPR China

The transition of traits between genetically related lineages is a fascinating topic that provides clues to understanding the drivers of speciation and *** can be learned about this process from phylogeny-based trait ***,such inference is often plagued by genome-wide gene-tree discordance(GTD),mostly due to incomplete lineage sorting(ILS)and/or introgressive hybridization,especially when the genes underlying the traits appear ***,by collecting transcriptomes,whole chloroplast genomes(cpDNA),and population genetic datasets,we used the coalescent model to turn GTD into a source of information for ILS and employed hemiplasy to explain specific cases of apparent“phylogenetic discordance”between different morphological traits and probable species phylogeny in the Allium *** concatenation and coalescence methods consistently showed the same phylogenetic topology for species tree inference based on single-copy genes(SCGs),as supported by the KS ***,GTD was high across the genomes of ***:~27%e38.9%of the SCG trees were in conflict with the species *** and nuclear incongruence was also *** coalescent simulations indicated that such GTD was mainly a product of *** hemiplasy risk factor calculations supported that random fixation of ancient polymorphisms in different populations during successive speciation events along the *** phylogeny may have caused the character transition,as well as the anomalous cpDNA *** study exemplifies how phylogenetic noise can be transformed into evolutionary information for understanding character state transitions along species phylogenies.

关键词： Hemiplasy Multispecies coalescence Lineage sorting Gene tree discordance Phylotranscriptomics Allium subg.Cyathophora

Responses of arbuscular mycorrhizal fungi to straw return and nitrogen fertilizer reduction in a rainfed maize field

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Pedosphere 2024年第2期34卷 351-360页

作者： Zhenling PENG Hao XI Lin MAO Huyuan FENG Jianjun ZHANG Yongjun LIU State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems College of EcologyLanzhou UniversityLanzhou 730000China college of Life Sciences Northwest Normal UniversityLanzhou 730070China School of Life Sciences Lanzhou UniversityLanzhou 730000China Dryland Agriculture Institute Gansu Academy of Agricultural SciencesLanzhou 730070China

Straw return can be used to reduce fertilizer input and improve agricultural sustainability and soil ***,how straw return and reduced fertilizer application affect beneficial soil microbes,particularly arbuscular mycorrhizal fungi(AMF),remains poorly ***,we conducted a five-year field experiment in a rainfed maize field on the Loess Plateau of northwestern *** tested four treatments with straw return combined with four nitrogen(N)application rates,i.e.,100%,80%,60%,and 0%of the common N application rate(225 kg N ha^(-1)year^(-1))in this region,and two reference treatments(full or no N application),with three replicates for each *** colonization was quantified and AMF communities colonizing maize roots were characterized using Illumina *** virtual taxa(VTs)of AMF were identified in root samples,among which VT113(related to Rhizophagus fasciculatus)and VT156(related to Dominikia gansuensis)were the predominant *** root length colonization and AMF VT richness were sensitive to N fertilization,but not to straw return;furthermore,both gradually increased with decreasing N application *** VT composition of the AMF community was also affected by N fertilization,but not by straw return,and the community variation could be well explained by soil available N and phosphorus ***,60%,80%,and full N fertilization produced similar maize ***,our study revealed the response patterns of AMF to straw return and N fertilizer reduction and showed that straw return combined with N fertilizer reduction may be a promising practice to maintain mycorrhizal symbiosis concomitantly with crop productivity.

关键词： agricultural sustainability crop productivity mycorrhizal colonization mycorrhizal symbiosis root length colonization virtual taxon

Habitat-specific changes of plant and soil microbial community composition in response to fairy ring fungus Agaricus xanthodermus on the Qinghai-Tibet Plateau

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Soil ecology Letters 2024年第3期6卷 189-197页

作者： Juan Du Cong He Fuxin Wang Ning Ling Shengjing Jiang State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems College of Pastoral Agriculture Science and TechnologyLanzhou UniversityLanzhou 730000China college of ecology Lanzhou UniversityLanzhou 730000China

Fairy rings are common in diverse global biomes and often appear as lush vegetation in one to three concentric zones caused by the spread of mycelia in grassland ***,the underlying mechanisms and environmental adaptation of fairy rings remain largely *** this study,two fairy rings(A and B)caused by Agaricus xanthodermus were sampled on the Qinghai-Tibet Plateau during a time when fairy rings are most *** conducting a vegetation survey and high-throughput sequencing,the changes of plants and soil microorganisms to fairy ring fungi were *** above-ground biomass at both fairy rings was greatly increased by fairy ring fungi,but the response of dominant plant species is different at two fairy ring *** addition,bacterial and fungal communities significantly varied within distinct sampling zones across the fairy rings,and showed variable genus-specific responses at two fairy ring *** fairy ring A,soil available N:P ratio was essential in shaping the structure of plant and microbial community,while soil available N concentration was the most important predictor at fairy ring *** together,our results indicated Agaricus xanthodermus fairy rings have variable effects on alpine meadow plants and soil microbes at different *** propose that the impacts of fairy ring fungi on plants and microbes are determined by the level of soil available N concentration and available N:P *** results contribute to a better understanding of the mechanisms through which fairy rings affect the vegetation of alpine meadows.

关键词： Fairy rings alpine meadow soil microbes plant-soil relationships

Bifurcation analysis and control study of improved full-speed differential model in connected vehicle environment

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Chinese Physics B 2024年第7期33卷 245-266页

作者：艾文欢雷正清李丹洋方栋梁刘大为 college of Computer Science and Engineering Northwest Normal UniversityLanzhou 730070China college of Electrical Engineering Lanzhou Institute of TechnologyLanzhou 730050China

In recent years, the traffic congestion problem has become more and more serious, and the research on traffic system control has become a new hot spot. Studying the bifurcation characteristics of traffic flow systems and designing control schemes for unstable pivots can alleviate the traffic congestion problem from a new perspective. In this work, the full-speed differential model considering the vehicle network environment is improved in order to adjust the traffic flow from the perspective of bifurcation control, the existence conditions of Hopf bifurcation and saddle-node bifurcation in the model are proved theoretically, and the stability mutation point for the stability of the transportation system is found. For the unstable bifurcation point, a nonlinear system feedback controller is designed by using Chebyshev polynomial approximation and stochastic feedback control method. The advancement, postponement, and elimination of Hopf bifurcation are achieved without changing the system equilibrium point, and the mutation behavior of the transportation system is controlled so as to alleviate the traffic congestion. The changes in the stability of complex traffic systems are explained through the bifurcation analysis, which can better capture the characteristics of the traffic flow. By adjusting the control parameters in the feedback controllers, the influence of the boundary conditions on the stability of the traffic system is adequately described, and the effects of the unstable focuses and saddle points on the system are suppressed to slow down the traffic flow. In addition, the unstable bifurcation points can be eliminated and the Hopf bifurcation can be controlled to advance, delay, and disappear,so as to realize the control of the stability behavior of the traffic system, which can help to alleviate the traffic congestion and describe the actual traffic phenomena as well.

关键词： bifurcation analysis vehicle queuing bifurcation control Hopf bifurcation

Asymmetric Drying and Wetting Trends in Eastern and Western China

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Advances in Atmospheric Sciences 2024年第2期41卷 221-232页

作者： Wen WU Fei JI Shujuan HU Yongli HE college of Atmospheric Sciences Lanzhou UniversityLanzhou 730000China Collaborative Innovation Center for Western Ecological Safety Lanzhou UniversityLanzhou 730000China

As an important factor that directly affects agricultural production, the social economy, and policy implementation,observed changes in dry/wet conditions have become a matter of widespread concern. However, previous research has mainly focused on the long-term linear changes of dry/wet conditions, while the detection and evolution of the non-linear trends related to dry/wet changes have received less attention. The non-linear trends of the annual aridity index, obtained by the Ensemble Empirical Mode Decomposition(EEMD) method, reveal that changes in dry/wet conditions in China are asymmetric and can be characterized by contrasting features in both time and space in China. Spatially, most areas in western China have experienced transitions from drying to wetting, while opposite changes have occurred in most areas of eastern China. Temporally, the transitions occurred earlier in western China compared to eastern China. Research into the asymmetric spatial characteristics of dry/wet conditions compensates for the inadequacies of previous studies, which focused solely on temporal evolution;at the same time, it remedies the inadequacies of traditional research on linear trends over centennial timescales. Analyzing the non-linear trend also provides for a more comprehensive understanding of the drying/wetting changes in China.

关键词： aridity index EEMD dry/wet conditions asymmetric evolution

Memristive oscillator to memristive map,energy characteristic

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Science China(Technological Sciences) 2024年第5期67卷 1567-1578页

作者： GUO YiTong MA Jun ZHANG XiaoFeng HU XiKui college of Electrical and Information Engineering Lanzhou University of TechnologyLanzhou730050China Department of Physics Lanzhou University of TechnologyLanzhou730050China School of Science Chongqing University of Posts and TelecommunicationsChongqing400065China

Most of nonlinear oscillators composed of capacitive and inductive variables can obtain the Hamilton energy by using the Helmholtz theorem when the models are rewritten in equivalent vector *** energy functions for biophysical neurons can be obtained by applying scale transformation on the physical field energy in their equivalent neural *** dynamical systems often have exact energy functions,while some mathematical models just suggest generic Lyapunov functions,and the energy function is effective to predict mode *** this paper,a memristive oscillator is approached by two kinds of memristor-based nonlinear circuits,and the energy functions are defined to predict the dependence of oscillatory modes on energy *** absence of capacitive variable for capacitor,the physical time t and charge q are converted into dimensionless variables by using combination of resistance and inductance(L,R),e.g.,τ=t×R/*** energy function for each memristive map is proposed by applying the similar weights as energy function for the memristive *** example,energy function for the map is obtained by replacing the variables and parameters of the memristive oscillator with corresponding variables and parameters for the memristive *** memristive map prefers to keep lower average energy than the memristive oscillator,and chaos is generated in a discrete system with two *** scheme is helpful for energy definition in maps,and it provides possible guidance for verifying the reliability of maps by considering the energy characteristic.

关键词： Hamilton energy memristor Helmholtz theorem scale transformation memristive circuit

New strategies for asymmetric photocatalysis: asymmetric organocatalytic/photoredox relay catalysis for efficient synthesis of polycyclic compounds containing vicinal amino alcohols

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Science China Chemistry 2024年第3期67卷 945-952页

作者： Jia-Lu Zhang Wen-Bo He Xiu-Qin Hu Peng-Fei Xu State Key Laboratory of Applied Organic Chemistry College of Chemistry and Chemical EngineeringLanzhou UniversityLanzhou 730000China State Key Laboratory of Veterinary Etiological Biology College of Veterinary MedicineLanzhou UniversityLanzhou Veterinary Research InstituteChinese Academy of Agricultural SciencesLanzhou 730000China MOE Frontiers Science Center for Rare Isotopes Lanzhou UniversityLanzhou 730000China

An asymmetric catalytic strategy in photocatalysis utilizing a chirality-induced approach through an organocatalytic/photoredox relay catalysis strategy is successfully achieved for the rapid construction of polycyclic compounds containing vicinal amino alcohols in a one-pot protocol. This methodology facilitates the efficient synthesis of diverse substituted polycyclic tetrahydroquinoline and benzofuran-derived vicinal amino alcohols, each containing five consecutive chiral centers, with high yields,excellent diastereoselectivities and enantioselectivities(up to 95% yield, >20:1 dr and 98% ee), under mild reaction conditions driven by sequential bifunctional squaramide organocatalyst-catalyzed [4+2] annulation and photocatalyst-catalyzed ketyl radical addition cyclization reaction process. Furthermore, investigations into the stereoselectivity mechanism and high-resolution mass spectrometry(HRMS) experiments on free radical trapping have provided evidence for elucidating the detailed mechanism of chirality-induced processes and chiral intermediate conversions in this procedure.

关键词： enantioselective photocatalysis asymmetric organocatalytic/photocatalysis relay catalysis five consecutive chiral centers chirality-induced strategy chirality vicinal amino alcohols

Ferritinophagy: A new idea for liver diseases regulated by ferroptosis

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Hepatobiliary & Pancreatic Diseases International 2024年第2期23卷 160-170页

作者： Zi-Bing Qian Jun-Feng Li Wan-Yuan Xiong Xiao-Rong Mao The First Clinical Medical college of lanzhou university Lanzhou 730000China Institute of Infectious Diseases The First Hospital of Lanzhou UniversityLanzhou 730000China Department of Infectious Disease The First Hospital of Lanzhou UniversityLanzhou 730000China

Background:The discovery of regulatory cell death has led to a breakthrough in the therapeutic *** forms of cell death,such as necrosis,apoptosis,pyroptosis,autophagy,and ferroptosis,play an important role in the development of liver *** general,more than one form of cell death pathways is responsible for the disease ***,it is particularly important to study the regulation and interaction of various cell death forms in liver *** sources:We performed a PubMed search up to November 2022 with the following keywords:ferritinophagy,ferroptosis,and liver *** also used terms such as signal path,inducer,and inhibitor to supplement the query ***:This review summarized the basic characteristics of ferritinophagy and ferroptosis and the regulation of ferroptosis by ferritinophagy and reviewed the key targets and treatment strategies of ferroptosis in different liver ***:Ferritinophagy is a potential therapeutic target in ferroptosis-related liver diseases.

关键词： Ferritinophagy Ferroptosis Liver disease