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Mitochondrial phylogeography and molecular evolution of the rhodopsin visual pigment in troglobitic populations of Astyanax mexicanus(de Filippi,1853)

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Zoological Research 2023年第4期44卷 761-775页

作者： Marco A.A.Garduño-Sánchez Vladimir de Jesus-Bonilla Silvia Perea Ramses Miranda-Gamboa Andrea Herrera-García Mauricio de la Maza Benignos Claudia Patricia Ornelas-García Colección Nacional de Peces Departamento de ZoologíaInstituto de BiologíaUniversidad Nacional Autónoma de MéxicoCiudad de MéxicoC.P.04510México Posgrado en Ciencias Biológicas Colección Nacional de PecesDepartamento de ZoologíaInstituto de BiologíaUniversidad Nacional Autónoma de MéxicoCiudad de MéxicoC.P.04510México Licenciatura en Ciencias Forenses Facultad de MedicinaUniversidad Nacional Autónoma de MéxicoCiudad UniversitariaCoyoacánMéxico CityC.P.04510México Instituto de Energías Renovables Universidad Nacional Autónoma de MéxicoTemixcoMorelos C.P.62580Mexico Facultad de Ciencias Biológicas Universidad Autónoma de Nuevo LeónCiudad UniversitariaSan Nicolás de los GarzaNuevo LeónC.P.66450México

Cave-adapted animals provide a unique opportunity to study the evolutionary mechanisms underlying phenotypic,metabolic,behavioral,and genetic evolution in response to cave environments.The Mexican tetra(Astyanax mexicanus)is considered a unique model system as it shows both surface and cave-dwelling morphs.To date,at least 33 different cave populations have been identified,with phylogenetic studies suggesting an origin from at least two independent surface lineages,thereby providing a unique opportunity to study parallel evolution.In the present study,we carried out the most exhaustive phylogeographic study of A.mexicanus to date,including cave and surface localities,using two mitochondrial markers(cytochrome b(cyt b)and cytochrome c oxidase subunit I(COI))and nuclear rhodopsin visual pigment(rho).Additionally,we inferred the molecular evolution of rho within the two contrasting environments(cave and surface)and across three geographic regions(Sierra de El Abra,Sierra de Guatemala,and Micos).In total,267 individuals were sequenced for the two mitochondrial fragments and 268 individuals were sequenced for the rho visual pigment from 22 cave and 46 surface populations.Phylogeographic results based on the mitochondrial data supported the two-lineage hypothesis,except for the Pachón and Chica caves,whose introgression has been largely documented.The Sierra de El Abra region depicted the largest genetic diversity,followed by the Sierra de Guatemala region.Regarding the phylogeographic patterns of rho,we recovered exclusive haplogroups for the Sierra de El Abra(Haplogroup I)and Sierra de Guatemala regions(Haplogroup IV).Moreover,a 544 bp deletion in the rho gene was observed in the Escondido cave population from Sierra de Guatemala,reducing the protein from seven to three intramembrane domains.This change may produce a loss-of-function(LOF)but requires further investigation.Regarding nonsynonymous(dn)and synonymous(dS)substitution rates(omega valuesω),our results revealed the prevailing influence of purifying selection

关键词： Visual pigments Selection Cavefish Vision loss Loss of function

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Host-parasite interactions in perpetual darkness:Macroparasite diversity in the cavefish Astyanax mexicanus

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Zoological Research 2023年第4期44卷 782-792页

作者： Ana Santacruz David Hernández-Mena Ramses Miranda-Gamboa Gerardo Pérez-Ponce de León Claudia Patricia Ornelas-García departamento de Zoología Instituto de BiologíaUniversidad Nacional Autónoma de MéxicoMéxico City CP 04510México departamento de Sistemas y Procesos naturales Escuela Nacional de Estudios Superiores Unidad MéridaUcúYucatán CP 97357México Instituto de Energías Renovables Universidad Nacional Autónoma de MéxicoTemixcoMorelos CP 62580México Colección Nacional de Peces Departamento de ZoologíaInstituto de BiologíaUniversidad Nacional Autónoma de MéxicoMéxico City CP 04510México Stowers Institute for Medical Research Kansas CityMO 64110USA

Astyanax mexicanus has repeatedly colonized cave environments,displaying evolutionary parallelisms in many troglobitic traits.despite being a model system for the study of adaptation to life in perpetual darkness,the parasites that infect cavefish are practically unknown.In this study,we investigated the macroparasite communities in 18 cavefish populations from independent lineages and compared them with the parasite diversity found in their sister surface fish populations,with the aim of better understanding the role that parasites play in the colonization of new environments.Within the cavefish populations,we identified 13 parasite taxa,including a subset of 10 of the 27 parasite taxa known for the surface populations.Parasites infecting the cavefish belong to five taxonomic groups,including trematodes,monogeneans,nematodes,copepods,and acari.Monogeneans are the most dominant group,found in 14 caves.The macroparasites include species with direct life cycles and trophic transmission,including invasive species.Surprisingly,paired comparisons indicate higher parasite richness in the cavefish than in the surface fish.Spatial variation in parasite composition across the caves suggests historical and geographical contingencies in the host-parasite colonization process and potential evolution of local adaptations.This base-line data on parasite diversity in cavefish populations of A.mexicanus provides a foundation to explore the role of divergent parasite infections under contrasting ecological pressures(cave vs.surface environments)in the evolution of cave adaptive traits.

关键词： Adaptation Metazoan parasites niche change Parasite assemblage Prevalence

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Genetic identification and reiterated captures suggest that the Astyanax mexicanus El Pachón cavefish population is closed and declining

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Zoological Research 2023年第4期44卷 701-711页

作者： Laurent Legendre Julie Rode Isabelle Germon Marie Pavie Carla Quiviger Maxime Policarpo Julien Leclercq Stéphane Père Julien Fumey Carole Hyacinthe Patricia Ornelas-García Luis Espinasa Sylvie Rétaux Didier Casane UniversitéParis-Saclay CNRSIRDUMRÉvolutionGénomesComportement etÉcologieGif-sur-Yvette 91190France Objectif Sciences International nGO OSI-Panthera ProgramGeneva 99140Switzerland Institut de neuroscience Paris-Saclay UniversitéParis-Saclay and CNRSSaclay 91400France Institut Pasteur UniversitéParis CitéCNRS UMR 2000Microbial Paleogenomics UnitParis 75015France Institut Pasteur UniversitéParis CitéBioinformatics and Biostatistics HubParis 75015France department of Genetics Harvard Medical SchoolBlavatnik InstituteBoston MA 02115USA Colección Nacional de Peces Departamento de ZoologíaInstituto de BiologíaUniversidad Nacional Autónoma de MéxicoMéxico DF CP 04510México School of Science Marist CollegePoughkeepsieNew York 12601USA UniversitéParis Cité UFR Sciences du VivantParis 75013France Zoological Institute Department of Environmental SciencesUniversity of BaselBaselSwitzerland

The sizes of Astyanax mexicanus blind cavefish populations of north-East Mexico are demographic parameters of great importance for investigating a variety of ecological,evolutionary,and conservation issues.However,few estimates have been obtained.For these mobile animals living in an environment difficult to explore as a whole,methods based on capture-mark-recapture are appropriate,but their feasibility and interpretation of results depend on several assumptions that must be carefully examined.Here,we provide evidence that minimally invasive genetic identification from captures at different time intervals(three days and three years)can give insights into cavefish population size dynamics as well as other important demographic parameters of interest.We also provide tools to calibrate sampling and genotyping efforts necessary to reach a given level of precision.Our results suggest that the El Pachón cave population is currently very small,of an order of magnitude of a few hundreds of individuals,and is distributed in a relatively isolated area.The probable decline in population size in the El Pachón cave since the last census in 1971 raises serious conservation issues.

关键词： Cavefish Population size Conservation Swabbing Genetic identification

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Dominant Macroalgae in Bahía de Cochinos, Matanzas, Cuba

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American Journal of Plant Sciences 2022年第6期13卷 797-814页

作者： Yusimí Alfonso Patricia González Sánchez Hansel Caballero Aragón Pedro Chevalier Jhoana Díaz-Larrea Ruben Cabrera Acuario nacional de Cuba La Habana Cuba Unidad Iztapalapa Departamento de Hidrobiología Universidad Autónoma Metropolitana Cd de México México Gabinete de Arqueología Oficina del Historiador de la Ciudad Habana Vieja Cuba

Spatial-temporal variations of macroalgae were analyzed in a study conducted in Cueva de Los peces (CP) and Punta Perdiz (PP), two dive sites located on the eastern coast of Bahía de Cochinos. The most conspicuous species found from 3 to 20 m depths were present in the biotopes of ridges and shallow and deep terraces. Sampling was carried out in September 2014, and March and October 2016 by autonomous diving and direct methods. Qualitative visual censuses and quantitative analyzes were used to estimate the coverage (%) of the genera according to the AGRRA methodology with the use of the 10 m linear transect and quadrats as the sampling unit. The first list of macroalgae for the area is offered that includes 49 taxa of which 10 were Rhodophyta, 10 Ochrophyta (Phaeophyceae), and 29 Chlorophyta. The dominant genera during the study period were Halimeda, Dictyota, Lobophora, and Udotea. Spatial differences were found regarding the specific composition. Temporal variations were evidenced in terms of the relative abundance of the genera present, which reveals temporal changes in the qualitative structure, where some species replace others. The information obtained is pioneering and can serve as a comparative baseline for future monitoring of the area.

关键词： Cuba Macroalgae Spatial-Temporal Variations Species List

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Isolation and Characterization of 26 Microsatellite Loci for the Shortfin Silverside Fish <i>Chirostoma humboldtianum</i>Valenciennes1835 (Atherinopsidae: Menidiinae) derived from next Generation Sequencing and Their Cross-Amplification in Central Mexican Atherinopsids

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Open Journal of Genetics 2014年第5期4卷 355-361页

作者： Barriga-Sosa Irene de los Angeles Rosa María García-Martínez Jhoana Díaz-Larrea Oscar Adrián Lozano Garza Francisco Javier García-de-León departamento de Hidrobiología Universidad Autónoma Metropolitana Iztapalapa México D.F. México Laboratorio de Genética y Biología Molecular Planta Experimental de Producción Acuícola Departamento de Hidrobiología Universidad Autónoma Metropolitana Iztapalapa México D.F. México Laboratorio de Genéticapara la Conservación Centro de Investigaciones Biológicas del Noroeste Instituto Politécnico Nacional La Paz México

The endemic silverside fish C. humboldtianum is of great ichtyologycal, economical and cultural relevance in central Mexico and it has been suggested that it is among a group of other “peces blancos”, the most ancestral species. Here we characterized a set of 26 microsatellite loci from the species in order to further assess population and phylogeographic issues that aid in evaluating their highly impacted populations. From 58 primer pairs tested on specimens from Villa Victoria dam (Rio Balsas Basin), 26 loci positively amplified on the species and cross-primed on specimens of the closely related and threatened Poblana alchichica, C. promelas and C. riojai. Loci resolved medium and high genetic variation (mean nA = 14.3, SD = 9.38;mean HO & HE = 0.47, SD = 0.32 and 0.58, SD = 0.32, respectively) and it is expected that these polymorphic loci are also useful in studing threatened atherinopsid species.

关键词： Endemic Polymorphism Villa Victoria Poblana alchichica C. promelas C. riojai

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