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Recombination and repeat-induced point mutation landscapes reveal trade-offs between the sexual and asexual cycles of Magnaporthe oryzae

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Journal of Genetics and Genomics 2024年第7期51卷 723-734页

作者： Xifang Zong Yaxin Lou Mengshuang Xia Kunyang Zhao Jingxuan Chen Ju Huang Sihai Yang Long Wang State Key Laboratory of Pharmaceutical Biotechnology School of Life SciencesNanjing UniversityNanjingJiangsu 210000China State Key Laboratory for Crop Genetics and Germplasm Enhancement Bioinformatics CenterAcademy for Advanced Interdisciplinary StudiesNanjing Agricultural UniversityNanjingJiangsu 210000China Co-Innovation center for Sustainable Forestry in Southern China Nanjing Forestry UniversityNanjingJiangsu 210000China

The fungal disease caused by Magnaporthe oryzae is one of the most devastating diseases that endanger many crops *** shows that sexual reproduction can be advantageous for fungal diseases as hybridization facilitates ***,the pervasive clonal lineages of *** observed in natural fields contradict this expectation.A better understanding of the roles of recombination and the fungi-specific repeat-induced point mutation(RIP)in shaping its evolutionary trajectory is essential to bridge this knowledge *** we systematically investigate the RIP and recombination landscapes in *** using a whole genome sequencing data from 252 population samples and 92 cross *** data reveal that the RIP can robustly capture the population history of ***,and we provide accurate estimations of the recombination and RIP rates across different *** ***,our results highlight a parent-of-origin bias in both recombination and RIP rates,tightly associating with their sexual potential and variations of effector *** bias suggests a critical trade-off between generating novel allelic combinations in the sexual cycle to facilitate host-jumping and stimulating transposon-associated diversification of effectors in the asexual cycle to facilitate host *** findings provide unique insights into understanding the evolution of blast fungus.

关键词： Magnaporthe oryzae Crossover Repeat-induced point mutation(RiP) Effectors Sexual reproduction

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The PHYB–FOF2–VOZ2 module functions to finetune flowering in response to changes in light quality by modulating FLC expression in Arabidopsis

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Plant Communications 2024年第7期5卷 231-250页

作者： Lina Qu Ming Zhong Feifei Duan Xinmei Li Jiaxin Yang Quanyu Zhou Dongying Tang Reqing He Xuanming Liu Xiaoying Zhao College of biology Hunan Province Key Laboratory of Plant Functional Genomics and Developmental RegulationHunan Engineering and Technology Research Center of Hybrid RapeseedHunan UniversityChangsha 410082China Shenzhen Institute Hunan UniversityShenzhen 518057China These authors contributed equally to this article

Proper timing of flowering under different environmental conditions is critical for plant *** quality is a pivotal environmental cue that plays a critical role in flowering *** tend to flower late under light with a high red(R)/far-red(FR)light ratio but early under light with a low R/FR light ***,how plants fine-tune flowering in response to changes in light quality is not well ***,we demonstrate that F-box of Flowering 2(FOF2),an autonomous pathway–related regulator,physically interacts with VASCULAR PLANT ONE-ZINC FINGER 1 and 2(VOZ1 and VOZ2),which are direct downstream factors of the R/FR light receptor phytochrome B(PHYB).We show that PHYB physically interacts with FOF2,mediates stabilization of the FOF2 protein under FR light and end-of-day FR light,and enhances FOF2 binding to VOZ2,which leads to degradation of VOZ2 by SCF^(FOF2) E3 *** contrast,PHYB mediates degradation of FOF2 protein under R light and end-of-day R *** interaction studies demonstrated that FOF2 functions downstream of PHYB to promote FLC expression and inhibit flowering under both high R/FR light and simulated shade conditions,processes that are partially dependent on VOZ *** together,our findings suggest a novel mechanism whereby plants fine-tune flowering time through a PHYB–FOF2–VOZ2 module that modulates FLC expression in response to changes in light quality.

关键词： PHYB FOF2 VOZ proteins FLC light quality flowering time

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Toosendanin: upgrade of an old agent in cancer treatment

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Chinese Journal of Natural Medicines 2024年第10期22卷 887-899页

作者： LI Shuwei XIONG Qingyi SHEN Yiwen LIN Jiayi ZHANG Lijun WU Ye JIN Jinmei LUAN Xin Shanghai Frontiers Science center for Chinese Medicine Chemical biology Institute of Interdisciplinary Integrative Medicine Research and Shuguang Hospital Shanghai University of Traditional Chinese Medicine

Toosendanin(TSN), a tetracyclic triterpenoid derived from Melia toosendan and M. azedarach, demonstrates broad application prospects in cancer treatment. Although previously employed as a pesticide, recent studies have revealed its potential therapeutic value in treating various types of cancer. TSN exerts an anticancer effect via mechanisms including proliferation inhibition, apoptosis induction, migration suppression, and angiogenesis inhibition. However, TSN's toxicity, particularly its hepatotoxicity, significantly limits its therapeutic application. This review explored the dual nature of TSN, evaluating both its anticancer potential and toxicological risks, emphasizing the importance of balancing these aspects in therapeutic applications. Furthermore, we investigated the incorporation of TSN into novel therapeutic strategies, such as Proteolysis-targeting chimeras(PROTAC) technology and nanotechnology-based drug delivery systems(DDS), which enhance treatment efficacy while mitigating toxicity in normal tissues.

关键词： Cancer therapy Hepatotoxicity Nano-delivery systems PROTAC Toosendanin

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Characterizing structure of cross-disciplinary impact of global disciplines:A perspective of the Hierarchy of Science

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Journal of Data and Information Science 2024年第1期9卷 53-81页

作者： Ruolan Liu Jin Mao Gang Li Yujie Cao center for studies of Information Resources Wuhan UniversityWuhan 430072China School of Information Management Wuhan UniversityWuhan 430072China School of Information Management Central China Normal University 430072WuhanChina

Purpose:Interdisciplinary fields have become the driving force of modern science and a significant source of scientific ***,there is still a paucity of analysis about the essential characteristics of disciplines’cross-disciplinary ***/methodology/approach:In this study,we define cross-disciplinary impact on one discipline as its impact to other disciplines,and refer to a three-dimensional framework of variety-balance-disparity to characterize the structure of cross-disciplinary *** variety of cross-disciplinary impact of the discipline was defined as the proportion of the high cross-disciplinary impact publications,and the balance and disparity of cross-disciplinary impact were measured as *** demonstrate the cross-disciplinary impact of the disciplines in science,we chose Microsoft Academic Graph(MAG)as the data source,and investigated the relationship between disciplines’cross-disciplinary impact and their positions in the Hierarchy of Science(HOS).Findings:Analytical results show that there is a significant correlation between the ranking of cross-disciplinary impact and the HOS structure,and that the discipline exerts a greater cross-disciplinary impact on its neighboring *** bibliometric features that measure the hardness of a discipline,including the number of references,the number of cited disciplines,the citation distribution,and the Price index have a significant positive effect on the variety of cross-disciplinary *** number of references,the number of cited disciplines,and the citation distribution have significant positive and negative effects on balance and disparity,*** is concluded that the less hard the discipline,the greater the cross-disciplinary impact,the higher balance and the lower disparity of cross-disciplinary *** limitations:In the empirical analysis of HOS,we only included five broad *** study also has some biases caused by the data source and a

关键词： Interdisciplinary research cross-disciplinary Scientific impact Soft science Hard science Citation

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Unveiling the culprit:the fusobacterium lineage that populates colorectal cancer

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Signal Transduction and Targeted Therapy 2024年第6期9卷 2349-2350页

作者： Johannes Betge Matthias P.Ebert Department of Medicine Ⅱ Medical Faculty MannheimHeidelberg UniversityMannheimGermany Junior Clinical Cooperation Unit Translational Gastrointestinal Oncology and Preclinical Models German Cancer Research Center(DKFZ)HeidelbergGermany DKFZ Hector Cancer Institute at University Medical center MannheimGermany MMPU Microbiota Drug Metabolism and Cancer Therapy European Molecular Biology LaboratoryHeidelbergGermany

In a recent study published in Nature,Zepeda-Rivera et al.1 discovered that one distinct clade of Fusobacterium nucleatum animalis(Fna)dominates the colorectal cancer(CRC)tumor *** work unravels a more precise understanding of a major bacterial species associated with CRC progression,thereby establishing a new focus for future studies,which may aid to develop improved microbiome-based diagnostics and treatments(Fig.1).

关键词： colorectal al. cancer

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Nanoscale cathodoluminescence spectroscopy probing the nitride quantum wells in an electron microscope

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Chinese Physics B 2024年第3期33卷 144-149页

作者：刘哲彤刘秉尧梁冬冬李晓梅李晓敏陈莉朱瑞徐军魏同波白雪冬高鹏 Electron Microscopy Laboratory School of PhysicsPeking UniversityBeijing 100871China Academy for Advanced Interdisciplinary studies Peking UniversityBeijing 100871China Research and Development center for Semiconductor Lighting Technology Institute of SemiconductorsChinese Academy of SciencesBeijing 100083China center of Materials Science and Optoelectronics Engineering University of Chinese Academy of SciencesBeijing 100049China Beijing National Laboratory for Condensed Matter Physics Institute of PhysicsChinese Academy of SciencesBeijing 100190China International center for Quantum Materials Peking UniversityBeijing 100871China

To gain further understanding of the luminescence properties of multiquantum wells and the factors affecting them on a microscopic level,cathodoluminescence combined with scanning transmission electron microscopy and spectroscopy was used to measure the luminescence of In_(0.15)Ga_(0.85)N five-period multiquantum *** lattice-composition-energy relationship was established with the help of energy-dispersive x-ray spectroscopy,and the bandgaps of In_(0.15)Ga_(0.85)N and GaN in multiple quantum wells were extracted by electron energy loss spectroscopy to understand the features of cathodoluminescence *** luminescence differences between different periods of multiquantum wells and the effects of defects such as composition fluctuation and dislocations on the luminescence of multiple quantum wells were *** study establishing the direct relationship between the atomic structure of In_(x)Ga_(1-x)N multiquantum wells and photoelectric properties provides useful information for nitride applications.

关键词： nitride multiquantum wells defect cathodoluminescence scanning transmission electron microscopy

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Evaluating eDNA and eRNA metabarcoding for aquatic biodiversity assessment: From bacteria to vertebrates

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Environmental Science and Ecotechnology 2024年第5期21卷 396-404页

作者： Yan Zhang Yu Qiu Kai Liu Wenjun Zhong Jianghua Yang Florian Altermatt Xiaowei Zhang State Key Laboratory of Pollution Control&Resource Reuse School of the EnvironmentNanjing UniversityNanjing210023China Department of Evolutionary biology and Environmental studies University of ZurichZürichSwitzerland Department of Aquatic Ecology Eawag:Swiss Federal Institute of Aquatic Science and TechnologyDübendorfSwitzerland Key Laboratory of Freshwater Fisheries and Germplasm Resources Utilization Ministry of Agriculture and Rural AffairsFreshwater Fisheries Research CenterChinese Academy of Fishery SciencesWuxi214081China

The monitoring and management of aquatic ecosystems depend on precise estimates of *** analyses of environmental nucleic acids(eNAs),including environmental DNA(eDNA)and environmental RNA(eRNA),have garnered attention for their cost-effective and non-invasive biomonitoring ***,the accuracy of biodiversity estimates obtained through eNAs can vary among different organismal *** we evaluate the performance of eDNA and eRNA metabarcoding across nine organismal groups,ranging from bacteria to terrestrial vertebrates,in three crosssections of the Yangtze River,*** observe robust complementarity between eDNA and eRNA *** relative detectability of eNAs was notably influenced by major taxonomic groups and organismal sizes,with eDNA providing more robust signals for larger *** eDNA and eRNA exhibited similar cross-sectional and longitudinal ***,the detectability of larger organisms declined in eRNA metabarcoding,possibly due to differential RNA release and decay among different organismal groups or *** underscoring the potential of eDNA and eRNA in large river biomonitoring,we emphasize the need for differential interpretation of eDNA versus eRNA *** highlights the importance of careful method selection and interpretation in biomonitoring studies.

关键词： Environmental nucleic acids Aquatic biodiversity Organismal size Species detectability

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Characterization of squash polysaccharide and the anti-diabetic effect on type 2 diabetic rat revealed by urine metabolomics analysis

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Food Science and Human Wellness 2024年第5期13卷 2937-2946页

作者： Li Liang Fuming Zhang Quanhong Li Baoguo Sun Yuyu Zhang Robert J.Linhardt Beijing Advanced Innovation center for Food Nutrition and Human Health Beijing Key Laboratory of Flavor ChemistryBeijing Technology and Business University(BTBU)Beijing 100048China Departments of Chemical and Biological Engineering Chemistry and Chemical BiologyBiomedical Engineering and Biological ScienceCenter for Biotechnology and Interdisciplinary StudiesRensselaer Polytechnic InstituteTroy 12180USA College of Food Science and Nutritional Engineering China Agricultural UniversityBeijing 100083China China National Engineering Research center for Fruit and Vegetable Processing Beijing 100083China

The present study reports the structural characteristics of 3 polysaccharide fractions(SPS-F1,SPS-F2 and SPS-F3)isolated and purified from ***-F1(molecular weight(Mw)=12.30 kDa)and SPS-F2(Mw=19.40 kDa)were likely to contain HG and RG-I domain of pectic polysaccharide,***-F2(Mw=270.4 kDa)was mainly composed of rhamnose,galactose and *** treatment with SPS decreased body weight gain,glucose and TG levels in type 2 diabetes ***,25 differential metabolites were identified based on urinary metabolomics analysis,which are crucial to the anti-diabetic effect of *** regulation of nicotinamide N-oxide,histamine,cis-aconitate,citrate,L-malic acid,3-(3-hydroxyphenyl)propanoic acid and N-acetyl-L-aspartic acid were mainly associated with energy metabolism,gut microbiota and *** of surface plasmon resonance revealed the binding kinetics with galectin-3(Gal-3)and fibroblast growth factor 2(FGF2).The K_(D)values of SPS-F2 and SPS-F3 to Gal-3 were 4.97×10^(-3)and 1.48×10^(-3)mol/L,indicating a weak binding *** 3 fractions showed moderate binding to FGF2 and the affinity was SPS-F3>SPS-F2>***,the metabolomics and SPR approach were proved to be a promising tool in exploring the anti-diabetes effects of SPS and provided a deep understanding of the mechanisms.

关键词： Polysaccharide Metabolomics Type 2 diabetes Surface plasmon resonance

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Remaking a connection:molecular players involved in post-injury synapse formation

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Neural Regeneration Research 2025年第6期20卷 1719-1720页

作者： Diogo Tomé Ramiro D.Almeida iBiMED-Institute of Biomedicine Department of Medical SciencesUniversity of AveiroAveiroPortugal CNC-center for Neuroscience and Cell biology University of CoimbraCoimbraPortugal

Functional recovery from central nervous system(CNS)trauma depends not only on axon regeneration or compensatory sprouting of uninjured fibers but also on the ability of newly grown axons to establish functional synapses with appropriate *** several studies have successfully promoted long-distance axonal regeneration in distinct CNS injury models,none of them have resulted in a viable therapeutic approach for patient recovery.A possible reason may be the lack of new synaptogenesis for reestablishing the circuitry lost after ***,we discuss how our understanding of the mechanisms that instruct synapse formation in the injured nervous system may contribute to the design of new strategies to promote functional restoration in traumatic CNS disorders.

关键词： viable injury instru

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Jun12682,a potent SARS-CoV-2 papain-like protease inhibitor with exceptional antiviral efficacy in mice

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Acta Pharmaceutica Sinica B 2024年第9期14卷 4189-4192页

作者： Mianling Yang Meehyein Kim Peng Zhan Department of Medicinal Chemistry Key Laboratory of Chemical Biology(Ministry of Education)School of Pharmaceutical SciencesShandong UniversityJi’nan 250012China Infectious Diseases Therapeutic Research center Korea Research Institute of Chemical Technology(KRICT)Daejeon 34114Republic of Korea

Recently,a collaborative research study published in Science,led by Jun Wang,Xufang Deng,Eddy Arnold,and Francesc Xavier Ruiz1,identified a series of potent small molecule inhibitors that specifically target SARS-CoV-2 papain-like protease(PLpro).The study demonstrated nanomolar PLpro inhibitory potency with Ki values ranging from 13.2 to 88.2 nmol/*** employing a structure-based drug design strategy,the researchers discovered an exceptionally promising compound,named Jun12682,that effectively targets both the newly discovered ubiquitin Val70(Val70Ub)-binding site and the known blocking loop(BL2)groove near the S4 subsite of ***,studies on the mechanism of action revealed that Jun12682 inhibits the deubiquitinating and deISGylating activities of PLpro,which are crucial for antagonizing the host’s innate immune response upon viral *** biology studies confirmed the“two-pronged”binding mode of Jun12682,aligning perfectly with their drug design ***,Jun12682 exhibited potent antiviral activity against SARS-CoV-2 and its variants,including nirmatrelvir-resistant mutants,in Caco-2 cells(EC50:0.44e2.02 mmol/L).It is noteworthy that its oral administration significantly improved survival rates and alleviated both lung virus loads and histopathological lesions in a lethal SARS-CoV-2 mouse *** conclusion。

关键词： SARS-CoV-2 Papain-like protease Broad-spectrum Anti-drug resistance Drug candidate

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