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Hierarchical auditory perception for species discrimination and individual recognition in the music frog

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Current Zoology 2022年第5期68卷 581-591页

作者： Yanzhu Fan Ke Fang Ruolei Sun Di Shen Jing Yang Yezhong Tang Guangzhan Fang Chengdu Institute of Biology Chinese Academy of SciencesChengdu 610041China College of Life Sciences University of Chinese Academy of SciencesBeijing 100049China School of Life Science Anhui UniversityHefei 230601China

The ability to discriminate species and recognize individuals is crucial for reproductive success and/or survival in most animals.However,the temporal order and neural localization of these decision-making processes has remained unclear.In this study,event-related potentials(ERPs)were measured in the telencephalon,diencephalon,and mesencephalon of the music frog Nidirana daunchina.These ERPs were elicited by calls from 1 group of heterospecifics(recorded from a sympatric anuran species)and 2 groups of conspecifics that differed in their fundamental frequencies.In terms of the polarity and position within the ERP waveform,auditory ERPs generally consist of 4 main components that link to selective attention(N1),stimulus evaluation(P2),identification(N2),and classification(P3).These occur around 100,200,250,and 300 ms after stimulus onset,respectively.Our results show that the N1 amplitudes differed significantly between the heterospecific and conspecific calls,but not between the 2 groups of conspecific calls that differed in fundamental frequency.On the other hand,the N2 amplitudes were significantly different between the 2 groups of conspecific calls,suggesting that the music frogs discriminated the species first,followed by individual identification,since N1 and N2 relate to selective attention and stimuli identification,respectively.Moreover,the P2 amplitudes evoked in females were significantly greater than those in males,indicating the existence of sexual dimorphism in auditory discrimination.In addition,both the N1 amplitudes in the left diencephalon and the P2 amplitudes in the left telencephalon were greater than in other brain areas,suggesting left hemispheric dominance in auditory perception.Taken together,our results support the hypothesis that species discrimination and identification of individual characteristics are accomplished sequentially,and that auditory perception exhibits differences between sexes and in spatial dominance.

关键词： event-related potentials(ERPs) individual identification music frog species discrimination temporal hierarchy

Automatic detection of teeth and dental treatment patterns on dental panoramic radiographs using deep neural networks

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Forensic Sciences Research 2022年第3期7卷 456-466页

作者： Hye-Ran Choi Thomhert Suprapto Siadari Jo-Eun Kim Kyung-Hoe Huh Won-Jin Yi Sam-Sun Lee Min-Suk Heo Department of Oral and Maxillofacial Radiology and Dental Research Institute School of DentistrySeoul National UniversitySeoulRepublic of Korea Artificial Intelligence Research Centre Digital Dental Hub IncorporationSeoulRepublic of Korea Department of Oral and Maxillofacial Radiology Seoul National University Dental HospitalSeoulRepublic of Korea

Disaster victim identification issues are especially critical and urgent after a large-scale disaster.The aim of this study was to suggest an automatic detection of natural teeth and dental treatment patterns based on dental panoramic radiographs(DPRs)using deep learning to promote its applicability as human identifiers.A total of 1638 DPRs,of which the chronological age ranged from 20 to 49 years old,were collected from January 2000 to November 2020.This dataset consisted of natural teeth,prostheses,teeth with root canal treatment,and implants.The detection of natural teeth and dental treatment patterns including the identification of teeth number was done with a pre-trained object detection network which was a convolutional neural network modified by EfficientDet-D3.The objective metrics for the average precision were 99.1%for natural teeth,80.6%for prostheses,81.2%for treated root canals,and 96.8%for implants,respectively.The values for the average recall were 99.6%,84.3%,89.2%,and 98.1%,in the same order,respectively.This study showed outstanding performance of convolutional neural network using dental panoramic radiographs in automatically identifying teeth number and detecting natural teeth,prostheses,treated root canals,and implants.

关键词： Forensic sciences forensic odontology individual identification disaster victim identification radiography deep learning artificial intelligence

An inter-laboratory study of DNA-based identity,parentage and species testing in animal forensic genetics

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Forensic Sciences Research 2022年第4期7卷 708-713页

作者： Sreetharan Kanthaswamy Torsten Brendel Luis Cancela Denise A.Andrade de Oliveira Bertram Brenig Carmen Cons Julian A.Crespi Markéta Dajbychová Andreas Feldl Tomohito Itoh Vincenzo Landi Amparo Martinez Malgorzata Natonek-Wisniewska Robert F.Oldt Anna Radko Oscar Ramírez Clementina Rodellar Manuel Ruiz-Girón David Schikorski María Elena Turba Guillermo Giovambatista School of Mathematics and Natural Sciences Arizona State University(ASU)at the West CampusGlendaleAZUSA California National Primate Research Center University of CaliforniaDavisCAUSA Evolutionary Biology Graduate Program School of Life SciencesArizona State UniversityTempeAZUSA Eurofins Genomics Europe Applied Genomics GmbH EbersbergGermany IDENTITAS MontevideoUruguay Laboratório de Genética Escola de Veterinária da UFMGBelo HorizonteBrazil Institute of Veterinary Medicine University of GoettingenGoettingenGermany Facultad de Veterinaria Laboratorio de Genética Bioquímica(LAGENBIO)Instituto Agroalimentario de Aragón-IA2(Universidad de Zaragoza-CITA)ZaragozaSpain Facultad de Ciencias Veterinarias UNLP IGEVET-Instituto de Genética Veterinaria(UNLP-CONICET LAPLATA)La PlataArgentina Genomia s.r.o. PlzeňCzech Republic Maebashi Institute of Animal Science Livestock Improvement Association of Japan(LIAJ)MaebashiJapan Department of Veterinary Medicine Animal Breeding and GeneticsUniversity of Bari“Aldo Moro”ValenzanoItaly Department of Genetics Faculty of Veterinary SciencesUniversity of CórdobaCórdobaSpain Department of Animal Molecular Biology National Research Institute of Animal ProductionBalicePoland Vetgenomics SL BarcelonaSpain Laboratorio de Biología Molecular y Genómica Hispalis Biolab S.L.U.SevilleSpain Laboratoire LABOFARM-GENINDEXE LOUDEACCedexFrance Genefast SRL ForlìItaly

The probative value of animal forensic genetic evidence relies on laboratory accuracy and reliability.Inter-laboratory comparisons allow laboratories to evaluate their performance on specific tests and analyses and to continue to monitor their output.The International Society for Animal Genetics(ISAG)administered animal forensic comparison tests(AFCTs)in 2016 and 2018 to assess the limitations and capabilities of laboratories offering forensic identification,parentage and species determination services.The AFCTs revealed that analyses of low DNA template concentrations(≤300 pg/μL)constitute a significant challenge that has prevented many laboratories from reporting correct identification and parentage results.Moreover,a lack of familiarity with species testing protocols,interpretation guidelines and representative databases prevented over a quarter of the participating laboratories from submitting correct species determination results.Several laboratories showed improvement in their genotyping accuracy over time.However,the use of forensically validated standards,such as a standard forensic short tandem repeat(STR)kit,preferably with an allelic ladder,and stricter guidelines for STR typing,may have prevented some common issues from occurring,such as genotyping inaccuracies,missing data,elevated stutter products and loading errors.The AFCTs underscore the importance of conducting routine forensic comparison tests to allow laboratories to compare results from each other.Laboratories should keep improving their scientific and technical capabilities and continuously evaluate their personnel’s proficiency in critical techniques such as low copy number(LCN)analysis and species testing.Although this is the first time that the ISAG has conducted comparison tests for forensic testing,findings from these AFCTs may serve as the foundation for continuous improvements of the overall quality of animal forensic genetic testing.

关键词： Forensic sciences forensic genetics comparison test forensic DNA analysis individual identification parentage test species test

Anthropological analyses of 30 insertion/deletion autosomal markers in five major ethnic groups of Pakistan

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Forensic Sciences Research 2022年第2期7卷 202-206页

作者： Muhammad Adnan Shan Julie Mechlenborg Rebecca Roen Claus Bosting Niels Morling Section of Forensic Genetics Department of Forensic MedicineFaculty of Health and Medical SciencesUniversity of CopenhagenCopenhagenDenmark Centre for Applied Molecular Biology(CA MB) University of the PunjabLahorePakistan

We investigated the forensic efficacy of the 30 insertion/deletion(Indel)markers included in the Qiagen Investigator■DIPplex kit in 529 Pakistani individuals from five major subpopulations in Pakistan(Punjabi,Pashtun,Sindhi,Saraiki,and Baloch).In the Sindhi population,the distribution of HLD81 and HLD97 alleles deviated from Hardy-Weinberg equilibrium after Bonferroni correction.The combined match probability ranged from 2.0E-12(Pashtun and Baloch)to 1.0E-12(Sindhi),and the mean paternity exclusion power varied from 0.995(Punjabi,Sindhi,and Saraiki)to 0.996(Pashtun and Baloch).The high combined power of discrimination(0.99999999999997)and low combined match probability(1.7E-12)for all subpopulations studied support the utility of the 30 Indel markers for forensic identification in the studied subpopulations.The allele frequencies of the Indel markers in the Pakistani subpopulations were compared with those from 18 other populations.The results show that the populations clustered according to geography.The subpopulations investigated in this work showed a close genetic relationship with others from Pakistan,as well as with South Central Asian and Middle Eastern populations.The results suggest that the Investigator■DIPplex kit can be useful as a supplementary tool for human identification in the five Pakistani subpopulations investigated in this study.

关键词： Forensic sciences forensic genetics Qiagen investigator■DIPplex kit anthropology population genetics individual identification

A Review of Animal individual Recognition Based on Computer Vision

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国际计算机前沿大会会议论文集 2022年第1期 287-309页

作者： Weifang Wang Junfeng Wu Hong Yu Huanjun Zhang Yizhi Zhou Yuxuan Zhang School of Information Engineering Dalian Ocean UniversityDalian 116023China Key Laboratory of Environment Controlled Aquaculture (Dalian Ocean University)Ministry of EducationDalian 116023China

With the improvement of modernization,China’s animal husbandry and fishery enterprise has ushered in a new vogue of informationization,factorization,and precision farming,and the demand for unique identification of individual animals is growing.Traditional individual animal identification methods,such as footprint identification,molecular biology,and different techniques,have low accuracy,excessive cost,and different risks.RFID technological know-how and implants put on monitoring units and different techniques additionally face invasiveinvasiveness,excessive labor costs,slender application scopes and challenges in promoting a massive place and different issues.Deep learning is enjoying an increasing number of essential positions in the discipline of animal individual identification,which has made it possible for the noninvasive recognition of individual animals.This paper discusses the progress of individual animal recognition using computer vision techniques and its application popularity in different species fields,focuses on the issues and challenges of individual animal recognition,and suggests that future lookup instructions for animal identification are foreseen.

关键词： Animal recognition individual identification Deep learning Computer visio Convolutional neural network

Recent Developments in Forensic DNA Typing

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Journal of Forensic Science and Medicine 2023年第4期9卷 353-359页

作者： Halimureti Simayijiang Jiangwei Yan Department of Forensic Genetics School of Forensic MedicineShanxi Medical UniversityShanxiChina Shanxi Key Laboratory of Forensic Medicine JinzhongShanxiChina

The field of forensic DNA typing,often referred to as“DNA fingerprinting,”has evolved and expanded considerably since its beginnings in the mid-1980s.Originally,forensic DNA typing was primarily used for individual identification and criminal investigations,but it has evolved into a versatile discipline with a wide range of applications.This article addresses the growing scope of forensic genetics,which includes advances in DNA sequencing technologies,mixture analysis,body fluid identification,phenotypic profiling,forensic genealogy,microbiological analysis,exploration of novel markers,and ethical and legal considerations.These developments have enabled the analysis of difficult samples and provided comprehensive insights into the origins of biological evidence.In an ever-evolving landscape,forensic genetics continues to shape the future of forensic science by providing new tools and techniques that help deliver justice in an increasingly complex world.

关键词： DNA typing individual identification massively parallel sequencing recent developments single nucleotide polymorphism

Estimating abundance and density of Amur tigers along the Sino- Russian border

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Integrative Zoology 2016年第4期11卷 322-332页

作者： Wenhong XIAO Limin FENG Pu MOU Dale GMIQUELLE Mark HEBBLEWHITE Joshua FGOLDBERG Hugh SROBINSON Xiaodan ZHAO Bo ZHOU Tianming WANG Jianping GE State Key Laboratory of Earth Surface Processes and Resource Ecology Ministry of Education Key Laboratory for Biodiversity Science and Engineeringand College of Life SciencesBeijing Normal UniversityBeijingChina Wildlife Biology Program Department of Ecosystem and Conservation SciencesCollege of Forestry and ConservationUniversity of MontanaMissoulaMontanaUSA Wildlife Conservation Society BronxNew YorkUSA Department of Ecology Far Eastern Federal UniversityAyaksRusski IslandVladivostokRussia Evolution Ecology and Organismal Biology ProgramDepartment of BiologyUniversity of CaliforniaRiversideCaliforniaUSA Panthera New YorkNYUSA

As an apex predator the Amur tiger(Panthera tigris altaica)could play a pivotal role in maintaining the integrity of forest ecosystems in Northeast Asia.Due to habitat loss and harvest over the past century,tigers rapidly declined in China and are now restricted to the Russian Far East and bordering habitat in nearby China.To facilitate restoration of the tiger in its historical range,reliable estimates of population size are essential to assess effectiveness of conservation interventions.Here we used camera trap data collected in Hunchun National Nature Reserve from April to June 2013 and 2014 to estimate tiger density and abundance using both maximum likelihood and Bayesian spatially explicit capture-recapture(SECR)methods.A minimum of 8 individuals were detected in both sample periods and the documentation of marking behavior and reproduction suggests the presence of a resident population.Using Bayesian SECR modeling within the 11400 km2 state space,density estimates were 0.33 and 0.40 individuals/100 km^(2) in 2013 and 2014,respectively,corresponding to an estimated abundance of 38 and 45 animals for this transboundary Sino-Russian population.In a maximum likelihood framework,we estimated densities of 0.30 and 0.24 individuals/100 km^(2) corresponding to abundances of 34 and 27,in 2013 and 2014,respectively.These density estimates are comparable to other published estimates for resident Amur tiger populations in the Russian Far East.This study reveals promising signs of tiger recovery in Northeast China,and demonstrates the importance of connectivity between the Russian and Chinese populations for recovering tigers in Northeast China.

关键词： Amur tiger camera traps density individual identification spatial capture-recapture

DNA recovery and analysis from skeletal material in modern forensic contexts

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Forensic Sciences Research 2019年第1期4卷 51-59页

作者： Krista E.Latham Jessica J.Miller Biology Department Human Identification CenterUniversity of IndianapolisIndianapolisINUSA

The generation of a DNA profile from skeletal remains is an important part of the identifica-tion process in both mass disaster and unidentified person cases. Since bones and teeth are often the only biological materials remaining after exposure to environmental conditions, intense heat, certain traumatic events and in cases where a significant amount of time has passed since the death of the individual, the ability to purify large quantities of informative DNA from these hard tissues would be beneficial. Since sampling the hard tissues for gen-etic analysis is a destructive process, it is important to understand those environmental and intrinsic factors that contribute to DNA preservation. This will serve as a brief introduction to these topics, since skeletal sampling strategies and molecular taphonomy have been dis-cussed in depth elsewhere. Additionally advances in skeletal DNA extraction and analysis will be discussed. Currently there is great variation in the DNA isolation methods used by laboratories to purify DNA from the hard tissues;however, a standardized set of short tan-dem repeat (STR) loci is analyzed by many US laboratories to allow for comparisons across samples and jurisdictions. Recent advances have allowed for the generation of DNA profiles from smaller quantities of template DNA and have expanded the number of loci analyzed for greater discriminatory power and predictions regarding the geographic ancestry and phenotype of the individual. Finally, utilizing databases and expanding the number of com-parison samples will be discussed in light of their role in the identification process.

关键词： Forensic sciences forensic anthropology forensic genetics individual identification molecular taphonomy skeletal DNA Extraction DNA profiles DNA databases

Population and genetic diversity of Tibetan red deer based on fecal DNA

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Journal of Forestry Research 2018年第1期29卷 227-232页

作者： Hejiao Hu Bo Xing Miao Yang Hamenya Mpemba Zhonghai Lv Minghai Zhang College of Wildlife Resources Northeast Forestry University

The Tibet Shannan Red Deer Nature Reserve is the center of the geographic distribution of Tibetan red deer. This paper presents the results of DNA analysis of 199 red deer fecal pellet groups collected during 2013 and 2014 during the green-plant period. We successfully extracted DNA from 87 DNA pellet groups and determined individual identification with 12 microsatellite loci. We evaluated the genetic diversity of the population and various population estimates with Capwire in R software. The87 successfully extracted pellet groups were from 50 individuals. In the population, the average number of alleles was 7.58 ± 0.18, the average effective number of alleles was 4.58 ± 0.15, and average polymorphism information content was 0.67 ± 0.01. Among the 12 loci,only T123 was moderately polymorphic; the other 11 loci were highly polymorphic. Expected heterozygosity ranged from 0.45 to 0.91, with an average of 0.72 ± 0.01, and average observed heterozygosity was 0.52 ± 0.11.Although Tibetan red deer remains endangered, the high genetic diversity indicates that this population has a good chance of recovery. This study provided insight that could be used by the local forestry department to develop programs to protect Tibetan red deer.

关键词： Fecal DNA individual identification Population Tibetan red deer