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The numbers of fungi:contributions from traditional taxonomic studies and challenges of metabarcoding

fungal Diversity 2022年第3期114卷 327-386页

作者： Chayanard Phukhamsakda Rolf Henrik Nilsson Chitrabhanu S.Bhunjun Antonio Roberto Gomes de Farias Ya-Ru Sun Subodini N.Wijesinghe Mubashar Raza Dan-Feng Bao Li Lu Saowaluck Tibpromma Wei Dong Danushka S.Tennakoon Xing-Guo Tian Yin-Ru Xiong Samantha C.Karunarathna Lei Cai Zong-Long Luo Yong Wang Ishara S.Manawasinghe Erio Camporesi Paul M.Kirk Itthayakorn Promputtha Chang-Hsin Kuo Hong-Yan Su Mingkwan Doilom Yu Li Yong-Ping Fu Kevin D.Hyde Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi Jilin Agricultural UniversityChangchun 130118JilinPeople’s Republic of China College of Plant Protection Jilin Agricultural UniversityChangchun 130118JilinPeople’s Republic of China Gothenburg Global Biodiversity Centre 40530 GothenburgSweden Department of Biological and Environmental Sciences University of GothenburgBox 46140530 GothenburgSweden Center of Excellence in fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Plant Pathology College of AgricultureGuizhou UniversityGuiyang 550025GuizhouPeople’s Republic of China State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing 100101People’s Republic of China College of Agriculture and Biological Sciences Dali UniversityDali 671003YunnanPeople’s Republic of China Department of Entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand Centre for Mountain Futures Kunming Institute of BotanyKunming 650201YunnanPeople’s Republic of China Center for Yunnan Plateau Biological Resources Protection and Utilization College of Biological Resource and Food EngineeringQujing Normal UniversityQujing 655011YunnanPeople’s Republic of China Innovative Institute for Plant Health Zhongkai University of Agriculture and EngineeringGuangzhou 510225People’s Republic of China Department of Plant Medicine National Chiayi University300 Syuefu RoadChiayi City 60004Taiwan School of Food and Pharmaceutical Engineering Guizhou Institute of TechnologyGuiyang 550003People’s Republic of China CAS Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201People’s Republic of China A.M.B.Gruppo Micologico Forlivese“Antonio Cicognani”Via Roma 18ForlìItaly A.M.B Circolo Micologico“Giovanni Carini”C.P.314 BresciaItaly

The global diversity of fungi has been estimated using several different *** is somewhere between 2–11 million estimated species,but the number of formally described taxa is around 150,000,a tiny fraction of the *** this paper,we examine 12 ascomycete genera as case studies to establish trends in fungal species descriptions,and introduce new species in each *** highlight the importance of traditional morpho-molecular methods in publishing new species,we introduce novel taxa in 12 genera that are considered to have low species *** discuss whether the species are likely to be rare or due to a lack of extensive sampling and *** genera are Apiospora,Bambusicola,Beltrania,Capronia,Distoseptispora,Endocalyx,Neocatenulostroma,Neodeightonia,Paraconiothyrium,Peroneutypa,Phaeoacremonium and *** discuss host-specificity in selected genera and compare the number of species epithets in each genus with the number of ITS(barcode)sequences deposited in GenBank and *** furthermore discuss the relationship between the divergence times of these genera with those of their *** hypothesize whether there might be more species in these genera and discuss hosts and habitats that should be investigated for novel species discovery.

关键词： 12 new taxa Ascomycota fungal diversity fungal numbers High-throughput sequencing Host-specificity

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The numbers of fungi: is the descriptive curve flattening?

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fungal Diversity 2020年第4期103卷 219-271页

作者： Kevin D.Hyde Rajesh Jeewon Yi-Jyun Chen Chitrabhanu S.Bhunjun Mark S.Calabon Hong-Bo Jiang Chuan-Gen Lin Chada Norphanphoun Phongeun Sysouphanthong Dhandevi Pem Saowaluck Tibpromma Qian Zhang Mingkwan Doilom Ruvishika S.Jayawardena Jian-Kui Liu Sajeewa S.N.Maharachchikumbura Chayanard Phukhamsakda Rungtiwa Phookamsak Abdullah M.Al-Sadi Naritsada Thongklang Yong Wang Yusufjon Gafforov E.B.Gareth Jones Saisamorn Lumyong Center of Excellence in fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Innovative Institute of Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China CAS Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Health Sciences Faculty of ScienceUniversity of MauritiusReduitMauritius East and Central Asia Regional Office World Agroforestry Centre(ICRAF)Kunming 650201YunnanPeople’s Republic of China Center for Mountain Futures Kunming Institute of BotanyKunming 650201YunnanPeople’s Republic of China Ecology Division Biotechnology and Ecology InstituteMinistry of Science and TechnologyP.O.Box:2279VientianeLao PDR Honghe Innovation Center for Mountain Futures Kunming Institute of BotanyChinese Academy of SciencesHonghe County 654400YunnanPeople’s Republic of China Department of Plant Pathology College of AgricultureGuizhou UniversityGuiyang 550025GuizhouPeople’s Republic of China School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Research Center of Microbial Diversity and Sustainable Utilization Faculty of SciencesChiang Mai UniversityChiang Mai 50200Thailand Department of Crop Sciences College of Agricultural and Marine SciencesSultan Qaboos UniversityP.O.Box 34Al khoud123 MuscatOman Laboratory of Mycology Institute of BotanyAcademy of Sciences of the Republic of Uzbekistan32 Durmon Yuli StreetTashkent 100125Uzbekistan Department of Ecology Andijan State University129 Universitet StreetAndijan 170100Uzbekistan Department of Botany and Microbiology College of ScienceKing Saud UniversityP.O Box 2455Riyadh 11451Kingdom of Saudi A

The recent realistic estimate of fungal numbers which used various algorithms was between 2.2 and 3.8 *** are nearly 100,000 accepted species of Fungi and fungus-like taxa,which is between 2.6 and 4.5%of the estimated *** forums such as Botanica Marina series,fungal Diversity notes,fungal Biodiversity Profiles,fungal Systematics and Evolution-New and Interesting Fungi,Mycosphere notes and fungal Planet have enhanced the introduction of new taxa and nearly 2000 species have been introduced in these publications in the last *** need to define a fungal species more accurately has been recognized,but there is much research needed before this can be better *** address the evidence that is needed to estimate the numbers of fungi and address the various advances that have been made towards its *** genera are barely known,whereas some plant pathogens comprise numerous species complexes and numbers are steadily *** this paper,we examine ten genera as case studies to establish trends in fungal description and introduce new species in each *** genera are the ascomycetes Colletotrichum and Pestalotiopsis(with many species or complexes),Atrocalyx,Dothiora,Lignosphaeria,Okeanomyces,Rhamphoriopsis,Thozetella,Thyrostroma(rela-tively poorly studied genera)and the basidiomycete genus *** provide examples where knowledge is incomplete or lacking and suggest areas needing further *** include(1)the need to establish what is a species,(2)the need to establish how host-specific fungi are,not in highly disturbed urban areas,but in pristine or relatively undisturbed forests,and(3)the need to establish if species in different continents,islands,countries or regions are different,or if the same fungi occur worldwide?Finally,we conclude whether we are anywhere near to flattening the curve in new species description.

关键词： 11 new taxa Atrocalyx Colletotrichum Dothiora fungal numbers Host-specificity Lepiota Lignosphaeria Okeanomyces Pestalotiopsis Rhamphoriopsis Thozetella Thyrostroma

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