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iNID： An Analytical Framework for Identifying Network Models for Interplays among Developmental Signaling in Arabidopsis

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Molecular Plant 2014年第5期7卷 792-813页

作者： Daeseok Choi Jaemyung Choi Byeongsoo Kang Seungchul Lee Young-hyun Cho Ildoo Hwang Daehee Hwang School of Interdisciplinary Bioscience and Bioengineering POSTECH 790-784 Pohang Republic of Korea Department of Life Sciences POSTECH 790-784 Pohang Republic of Korea Department of New Biology DGIST Daegu 711-873 Republic of Korea Division of Integrative Biosciences and Biotechnologies POSTECH 790-784 Pohang Republic of Korea Center for Systems Biology of Plant Senescence and-Life History Institute for BasicScience DGIST Daegu 711-873 Republic of Korea

Integration of internal and external cues into developmental programs is indispensable for growth and development of plants, which involve complex interplays among signaling pathways activated by the internal and external factors （IEFs）. However, decoding these complex interplays is still challenging. Here, we present a web-based platform that identifies key regulators and Network models delineating Interplays among Developmental signaling （iNID） in Arabidopsis. iNID provides a comprehensive resource of （1） transcriptomes previously collected under the conditions treated with a broad spectrum of IEFs and （2） protein and genetic interactome data in Arabidopsis. In addition, iNID provides an array of tools for identifying key regulators and network models related to interplays among IEFs using transcriptome and interactome data. To demonstrate the utility of iNID, we investigated the interplays of （1） phytohormones and light and （2） phytohormones and biotic stresses. The results revealed 34 potential regulators of the interplays, some of which have not been reported in association with the interplays, and also network models that delineate the involvement of the 34 regulators in the interplays, providing novel insights into the interplays collectively defined by phytohormones, light, and biotic stresses. We then experimentally verified that BME3 and TEM1, among the selected regulators, are involved in the auxin-brassinosteroid （BR）-blue light interplay. Therefore, iNID serves as a useful tool to provide a basis for understanding interplays among IEFs.

关键词： transcriptome analysis network analysis signal interplays development Arabidopsis.

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Thioredoxin Reductase Type C （NTRC） Orchestrates Enhanced Thermotolerance to Arabidopsis by Its Redox-Dependent Holdase Chaperone Function

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Molecular Plant 2013年第2期6卷 323-336页

作者： Ho Byoung Chae Jeong Chan Moon Mi Rim Shin Yong Hun Chi Young Jun Jung Sun Yong Lee Ganesh M. Nawkar Hyun Suk Jung Jae Kyung Hyun Woe Yeon Kim Chang Ho Kang Dae-Jin Yun Kyun Oh Lee Sang Yeol Lee Division of Applied Life Science (BK21 program) and PMBBRC Gyeongsang National University 501 Jinju-daero Jinju 660-701 Korea Division of Electron Microscopic Research Korea Basic Science Institute 113 Gwahangno Yuse0ng-guDaejeon 303-333 Korea

Genevestigator analysis has indicated heat shock induction of transcripts for NADPH-thioredoxin reduc-tase, type C （NTRC） in the light. Here we show overexpression of NTRC in Arabidopsis （NTRC°E） resulting in enhanced tolerance to heat shock, whereas NTRC knockout mutant plants （ntrcl） exhibit a temperature sensitive phenotype. To investigate the underlying mechanism of this phenotype, we analyzed the protein＇s biochemical properties and protein structure. NTRC assembles into homopolymeric structures of varying complexity with functions as a disulfide reductase, a foldase chaperone, and as a holdase chaperone. The multiple functions of NTRC are closely correlated with protein structure.. Complexes of higher molecular weight （HMW） showed stronger activity as a holdase chaperone, while low molecular weight （LMW） species exhibited weaker holdase chaperone activity but stronger disulfide reductase and fol-dase chaperone activities. Heat shock converted LMW proteins into HMW complexes. Mutations of the two active site Cys residues of NTRC into Ser （C217/454S-NTRC） led to a complete inactivation of its disulfide reductase and foldase chaperone functions, but conferred only a slight decrease in its holdase chaperone function. The overexpression of the mutated C217/454S-NTRC provided Arabidopsis with a similar degree of thermotolerance compared with that of NTRC°E plants. However, after prolonged incubation under heat shock, NTRC°E plants tolerated the stress to a higher degree than C217/454S-NTRC°E plants. The results suggest that the heat shock-mediated holdase chaperone function of NTRC is responsible for the increased thermotolerance of Arabidopsis and the activity is significantly supported by NADPH.

关键词： NADPH-thioredoxin reductase type C (NTRC) oligomeric complexes disulfide reductase foldase and holdasechaperone functions redox thermotolerance.

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Cold Signaling via the Two-Component Signaling System

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Molecular Plant 2013年第1期6卷 15-17页

作者： Jungmook Kim Jin Jeon Department of Bioenergy Science and Technology Chonnam National University Buk-Gu Gwangju 500-757 Korea

Two-component signal transduction is commonly used as a stimulus-response coupling mechanism to allow organisms such as eubacteria, archea, and a few eukaryotes to sense and respond to changes in many different environmental conditions （Stock et al., 2000）. Typically, the histidine protein kinase senses extracellular stimuli by autophosphorylation and transfers a phosphoryl group to the response regu- lator, resulting in activation of downstream proteins that elicit a specific response. In Arabidopsis plants, a multi-step two-component system is well established as a key element of plant hormone cytokinin signaling （To and Kieber, 2008）.

关键词： Two-component system Signal system Protein kinase Autophosphorylation Cytokinins Signal transduction Coupling mechanism Eukaryotic cells

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Impact of device resistances in the performance of graphene‑based terahertz photodetectors

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Frontiers of Optoelectronics 2024年第2期17卷 87-97页

作者： O.Castelló Sofía M.López Baptista K.Watanabe T.Taniguchi E.Diez J.E.Velázquez-Pérez Y.M.Meziani J.M.Caridad J.A.Delgado-Notario Department of Applied Physics University of Salamanca37008 SalamancaSpain Unidad de Excelencia en Luz y Materia Estructurada(LUMES) University of Salamanca37008 SalamancaSpain Research Center for Electronic and Optical Materials National Institute for Materials Science1-1 NamikiTsukuba 305-0044Japan Research Center for Materials Nanoarchitectonics National Institute for Materials Science1-1 NamikiTsukuba 305-0044Japan Nanotechnology Group USAL-NanolabUniversity of Salamanca37008 SalamancaSpain

In recent years,graphene field-effect-transistors(GFETs)have demonstrated an outstanding potential for terahertz(THz)photodetection due to their fast response and *** features are essential to enable emerging THz applications,including 6G wireless communications,quantum information,bioimaging and ***,the overall performance of these photodetectors may be utterly compromised by the impact of internal resistances presented in the device,so-called access or parasitic *** this work,we provide a detailed study of the influence of internal device resistances in the photoresponse of high-mobility dual-gate GFET *** dual-gate architectures allow us to fine tune(decrease)the internal resistance of the device by an order of magnitude and consequently demonstrate an improved responsivity and noise-equivalent-power values of the photodetector,*** results can be well understood by a series resistance model,as shown by the excellent agreement found between the experimental data and theoretical *** findings are therefore relevant to understand and improve the overall performance of existing high-mobility graphene photodetectors.

关键词： Graphene THz Photodetector Field-effect transistor Plasmonic

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Recent Advances in Cuticular Wax Biosynthesis and Its Regulation in Arabidopsis

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Molecular Plant 2013年第2期6卷 246-249页

作者： Saet Buyl Lee Mi Chung Suh Department of Bioenergy Science and Technology Chonnam National University Gwangju Korea

The aerial parts of land plants are covered with cuticu- lar waxes that limit non-stomatal water loss and gaseous exchanges, and protect plants from ultraviolet radiation and pathogen attacks. They are composed of very-long-chain fatty acids （VLCFAs; C20 to C34） in addition to their deriva-tives, aldehydes, alkanes, primary and secondary alcohols, and wax esters. Due to their physical properties, such as solid-ity at room temperature and a translucency ranging from transparent to opaque, plant waxes have been used as raw materials in the production of cosmetics, detergents, plas-tics, soaps, paints, drugs, lubricants, and high-value renew-able fuels. Many genes involved in cuticular wax biosynthesis and export have been characterized by forward and reverse genetic approaches as well as by stem epidermis transcrip-tome analysis. The regulatory mechanisms of cuticular wax biosynthesis have been reported at the transcriptional, post- transcriptional, and translational levels. Recent advances in cuticular wax biosynthesis and its regulation are reviewed in this paper.

关键词： TRANSCRIPTION FACTOR EXPORT COMPONENTS PROTEIN LIPIDS

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Rheostatic Control of ABA Signaling through HOS15-Mediated OST1 Degradation

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Molecular Plant 2019年第11期12卷 1447-1462页

作者： Akhtar Ali Jae Kyoung Kim Masood Jan Haris Ali Khan Irfan Ullah Khan Mingzhe Shen Junghoon Park Chae Jin Lim Shah Hussain Dongwon Baek Kai Wang Woo Sik Chung Vicente Rubio Sang Yeol Lee Zhizhong Gong Woe Yeon Kim Ray ABressan Jose MPardo Dae-Jin Yun Department of Biomedical Science&Engineering Konkuk UniversitySeoul 05029South Korea Department of Mathematical Sciences Korea Advanced Institute of Science and TechnologyDaejeon 34131Korea Division of Applied Life Science Plant Molecular Biology and Biotechnology Research CenterGyeongsang National UniversityJinju 660-701South Korea State Key Laboratory of Plant Physiology and Biochemistry College of Biological SciencesChina Agricultural UniversityBeijing 100193China Centro Nacional de Biotecnologia-CSIC Darwin 3.Campus de la UAM.Cantoblanco28049 MadridSpain Department of Horticulture and Landscape Architecture Purdue University625 Agriculture Mall DriveWest LafayetteIN 47907-2010USA lnstituto de Bioquimica Vegetal y Fotosintesis cicCartujaCSIC-Universidad de SevillaAmericoVespucio 49Sevilla 41092Spain

Dehydrating stresses trigger the accumulation of abscisic acid(ABA),a key plant stress-signaling hormone that activates Snf1-Related Kinases(SnRK2s)to mount adaptive ***,the regulatory circuits that terminate the SnRK2s signal relay after acclimation or post-stress conditions remain to be ***,we show that the desensitization of the ABA signal is achieved by the regulation of OST1(SnRK2.6)protein stability via the E3-ubiquitin ligase *** ABA signal,HOS15-induced degradation of OST1 is inhibited and stabilized OST1 promotes the stress *** the ABA signal terminates,protein phosphatases ABI1/2 promote rapid degradation of OST1 via ***,we found that even in the presence of ABA,OST1 levels are also depleted within hours of ABA signal *** unexpected dynamics of OST1 abundance are then resolved by systematic mathematical modeling,demonstrating a desensitizing feedback loop by which OST1-induced upregulation of ABI1/2 leads to the degradation of *** model illustrates the complex rheostat dynamics underlying the ABA-induced stress response and desensitization.

关键词： ABA signaling drought stress HOS15 OST1 ABI1/2 protein degradation and stability

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The Conserved Proline Residue in the LOB Domain of LBD18 Is Critical for DNA-Binding and Biological Function

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Molecular Plant 2013年第5期6卷 1722-1725页

作者： Han Woo Lee Min-Jung Kimb MoungYeon Park Kyung-Hwan Han Jungmook Kim Department of Bioenergy Science and Technology Chonnam National University Gwangju 500-757 Korea Department of Plant Biotechnology Chonnam National University Gwangju 500-757 Korea Department of Horticulture and Department of Forestry Michigan State University East Lansing MI 48824-1222 USA Kumho Life Science Laboratory Chonnam National University Buk-Gu Gwangju 500-757 Korea

Dear Editor, The LATERAL ORGAN BOUNDARIES DOMAIN （LBD）/ ASYMMETRICLEAVES2-LIKE （ASL） genes （hereafter referred to as LBD） encode proteins containing a conserved plant-specific LOB domain and play roles in lateral organ development （Iwakawa et al., 2002; Shuai et al., 2002; Majer and Hochholdinger, 2011）. The LOB domain is approximately 100 amino acids in length and contains a conserved four-Cys motif （CX2CX6CX3C）, the Gly-Ala-Ser block （GAS）, and the leucine-zipper-like coiled-coil motif （LX6LX3LX6L）（Shuai et al., 2002）. The leucine-zipper-like coiled-coil motif in the LOB domain is predicted to function in protein dimerization. LOB, AS2, and LBD4 preferentially bind unique DNA sequences in electrophoretic mobility shift assays （EMSAs）（Husbands et al., 2007）. The LOB domain of AS2 cannot be functionally replaced by those of other members of the LOB family,

关键词： LOB 生物学功能 DNA结合保守脯氨酸亮氨酸拉链残基器官发育

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Oligomerization between BSU1 Family Members Potentiates Brassinosteroid Signaling in Arabidopsis

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Molecular Plant 2016年第1期9卷 178-181页

作者： Eun-Ji Kim Ji-Hyun Youn Chan-Ho Park Tae-Woo Kim Shenheng Guan Shouling Xu AlmaL. Burlingame Young-Pil Kim Seong-Ki Kim Zhi-Yong Wang Tae-Wuk Kim Research Institute for Natural Sciences Hanyang University Seoul 133-791 Korea

Brassinosteroid （BR） regulates diverse physiological and devel- opmental processes in plants （Choudhary et al., 2012）. BR binds to the receptor kinase BRI1 to trigger a phosphorylation/ dephosphorylation cascade, which includes phosphorylation of Brassinosteroid Signaling Kinase 1 （BSK1） and Constitutive Differential Growth 1 （CDG1） by BRI1, phosphorylation of BSU1 by CDG1, and dephosphorylation of BIN2 （a GSK3-1ike kinase） by BSU1 （Kim et al., 2009, 2011; Wang et al., 2014）. Almost all the downstream components of BR signaling are encoded by multiple genes of a family.

关键词： PROTEIN PHOSPHATASES REPEAT DOMAINS TRANSDUCTION KINASE

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Functional Insights of Plant GSK3-like Kinases： Multi-Taskers in Diverse Cellular Signal Transduction Pathways

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Molecular Plant 2015年第4期8卷 552-565页

作者： Ji-Hyun Youn Tae-Wuk Kim Department of Life Science College of Natural Sciences Hanyang University Seou1133-791 Korea Naturat Science Institute Hanyang University Seou1133-791 Korea

The physiological importance of GSK3-like kinases in plants emerged when the functional role of plant GSK3-like kinases represented by BIN2 was first elucidated in the brassinosteroid （BR）-regulated signal transduction pathway. While early studies focused more on understanding how GSK3-like kinases regulate BR signaling, recent studies have implicated many novel substrates of GSK3-like kinases that are involved in a variety of cellular processes as well as BR signaling. Plant GSK3-like kinases play diverse roles in physiological and developmental processes such as cell growth, root and stomatal cell development, flower development, xylem differentiation, light response, and stress responses. Here, we review the progress made in recent years in understanding the versatile functions of plant GSK3-like kinases. Based on the relationship between GSK3-like kinases and their newly identified substrates, we discuss the physiological and biochemical relevance of various cellular signaling mediated by GSK3-like kinases in plants.

关键词： GSK3-like kinases brassinosteroids signal transduction pathway Arabidopsis rice

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BRI1-Associated Receptor Kinase 1 Regulates Guard Cell ABA Signaling Mediated by Open Stomata 1 in Arabidopsis

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Molecular Plant 2016年第3期9卷 447-460页

作者： Yun Shang Changbo Dai Myeong Min Lee June M. Kwak Kyoung Hee Nam Department of Biological Sciences Sookmyung Women's University Seou1140-742 Republic of Korea Department of Systems Biology Yonsei University Seou1120-749 Republic of Korea Department of New Biology Center for Plant Aging Research Institute for Basic Science Daegu Gyeongbuk Institute of Science and Technology Daegu 711-873 Republic of Korea

Stomatal movements are critical in regulating gas exchange for photosynthesis and water balance between plant tissues and the atmosphere. The plant hormone abscisic acid （ABA） plays key roles in regulating stomatal closure under various abiotic stresses. In this study, we revealed a novel role of BAKI in guard cell ABA signaling. We found that the brassinosteroid （BR） signaling mutant bakl lost more water than wild- type plants and showed ABA insensitivity in stomatal closure. ABA-induced OST1 expression and reactive oxygen species （ROS） production were also impaired in bakl. Unlike direct treatment with H202, overex-pression of OST1 did not completely rescue the insensitivity of bakl to ABA. We demonstrated that BAK1 forms a complex with OST1 near the plasma membrane and that the BAKI/OST1 complex is increased in response to ABA in planta. Brassinolide, the most active BR, exerted a negative effect on ABA-induced formation of the BAK1/OST1 complex and OST1 expression. Moreover, we found that BAK1 and ABI1 oppositely regulate OST1 phosphorylation in vitro, and that ABI1 interacts with BAK1 and inhibits the interaction of BAK1 and OST1. Taken together, our results suggest that BAK1 regulates ABA-induced stomatal closure in guard cells.

关键词： BAK1 OST1 ABA-induced stomatal closure Arabidopsis thaliana

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