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Apple(Malus domestica Borkh.)seed:A review on health promoting bioactivities and its application as functional food ingredient

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Food Bioscience 2022年第6期50卷 2051-2066页

作者： Manoj Kumar Mrunal D.Barbhai Tuba Esatbeyoglu Baohong Zhang Vijay Sheri Sangram Dhumal Nadeem Rais Radha Eman Mohammad Said Al Masry Deepak Chandran Ravi Pandiselvam Marisennayya Senapathy Abhijit Dey Sheetal Vishal Deshmukh Mohamed El Sayed Negm marthandan vishvanathan Sangeetha Kizhakkumkara Sathyaseelan Sabareeshwari Viswanathan Pran Mohankumar José M.Lorenzo Chemical and Biochemical Processing Division ICAR—Central Institute for Research on Cotton TechnologyMumbai400019India Department of Food Development and Food Quality Institute of Food Science and Human NutritionGottfried Wilhelm Leibniz University HannoverAm Kleinen Felde 3030167HannoverGermany Department of Biology East Carolina UniversityGreenville27858USA Division of Horticulture RCSM College of AgricultureKolhapur416004India Department of Pharmacy Bhagwant UniversityAjmerRajasthan305004India School of Biological and Environmental Sciences Shoolini University of Biotechnology and Management SciencesSolan173229India Faculty of Libral Arts and Ancient Indian Wisdom Shoolini UniversitySolan173229India Department of Veterinary Sciences and Animal Husbandry Amrita School of Agricultural SciencesAmrita Vishwa Vidyapeetham UniversityCoimbatore642109India Division of Physiology Biochemistry and Post-Harvest TechnologyICAR-Central Plantation Crops Research Institute (CPCRI)KasaragodKerala671124India Department of Rural Development and Agricultural Extension College of AgricultureWolaita Sodo UniversityWolaita SodoSNNPREthiopia Department of Life Sciences Presidency University86/1 College StreetKolkata700073India Bharati Vidyapeeth (Deemed to be University) Yashwantrao Mohite Institute of ManagementKaradIndia Cotton Research Institute Agriculture Research CenterGiza3725004Egypt Department of Seed Science and Technology Amrita School of Agricultural SciencesAmrita Vishwa Vidyapeetham UniversityCoimbatore642109India Department of Plantation Crops and Spices Kerala Agricultural UniversityVellanikkaraThrissur680656KeralaIndia Department of Soil Science and Agricultural Chemistry Amrita School of Agricultural SciencesAmrita Vishwa Vidyapeetham UniversityCoimbatore642109India School of Agricultural Sciences Karunya Institute of Technology and SciencesCoimbatore - 641114India Centro Tecnológico de la Carne de Galicia Parque Tecnológico de GaliciaAvd.Galicia n° 4Sa

Recent trends in food industry focus on utilization of fruit processing waste and by-products as novel ingredients due to their nutritional *** seed is one such novel ingredient that can find application as functional ingredient in food,nutraceutical and pharmaceutical *** existing studies suggest that apple seed is a rich source of amino acids,fatty acids and polyphenolic *** review discusses the nutritional and phytochemical profile as well as biological activities exhibited by the apple *** also highlights the current application of apple seed in food,pharmaceutical and nutraceutical industries along with the safety aspects considering the presence of *** apple seed meal,extracts or seed oil as novel ingredient can find various industrial applications given their dense nutritional *** their functionality,rigorous and extensive research is required to promote its usage at industrial level for harnessing the benefits of apple seeds.

关键词： Apple seed Biological activities Industrial applications Phytochemicals

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SMS 2.0: An Updated Database to Study the Structural Plasticity of Short Peptide Fragments in Non-redundant Proteins

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Genomics, Proteomics & Bioinformatics 2012年第1期10卷 44-50页

作者： Dheeraj Ravella Muthukumarasamy Uthaya Kumar Durairaj Sherlin Mani Shankar marthandan Kirti Vaishnavi Kanagaraj Sekar Bioinformatics Centre (Centre of Excellence in Structural Biology and Bio-computing) Supercomputer Education and Research Centre Indian Institute of Science Bangalore 560012 India

The function of a protein molecule is greatly influenced by its three-dimensional （3D） structure and therefore structure prediction will help identify its biological function. We have updated Sequence, Motif and Structure （SMS）, the database of structurally rigid peptide fragments, by combining amino acid sequences and the corre- sponding 3D atomic coordinates of non-redundant （25%） and redundant （90%） protein chains available in the Protein Data Bank （PDB）. SMS 2.0 provides information pertaining to the peptide fragments of length 5-14 resi- dues. The entire dataset is divided into three categories, namely, same sequence motifs having similar, intermedi- ate or dissimilar 3D structures. Further, options are provided to facilitate structural superposition using the pro- gram structural alignment of multiple proteins （STAMP） and the popular JAVA plug-in （Jmol） is deployed for visualization. In addition, functionalities are provided to search for the occurrences of the sequence motifs in other structural and sequence databases like PDB, Genome Database （GDB）, Protein Information Resource （PIR） and Swiss-Prot. The updated database along with the search engine is available over the World Wide Web through the following URL http：//***/sms/.

关键词： non-redundant protein chains sequence motifs 3D structure structural superposition

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Homepeptide Repeats:Implications for Protein Structure,Function and Evolution

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Genomics, Proteomics & Bioinformatics 2012年第4期10卷 217-225页

作者： Muthukumarasamy Uthayakumar Bowdadu Benazir Sanjeev Patra marthandan Kirti Vaishnavi Manickam Gurusaran Kanagarajan Sureka Jeyaraman Jeyakanthan Kanagaraj Sekar Supercomputer Education and Research Centre Indian Institute of ScienceBangalore 560012India Department of Bioinformatics Alagappa UniversityKaraikudi 630003India

Analysis of protein sequences from Mycobacterium tuberculosis H37Rv （Mtb H37Rv） was performed to identify homopeptide repeat- containing proteins （HRCPs）. Functional annotation of the HRCPs showed that they are preferentially involved in cellular metabolism. Furthermore, these homopeptide repeats might play some specific roles in protein-protein interaction. Repeat length differences among Bacteria, Archaea and Eukaryotes were calculated in order to identify the conservation of the repeats in these divergent kingdoms. From the results, it was evident that these repeats have a higher degree of conservation in Bacteria and Archaea than in Eukaryotes. In addi- tion, there seems to be a direct correlation between the repeat length difference and the degree of divergence between the species. Our study supports the hypothesis that the presence of homopeptide repeats influences the rate of evolution of the protein sequences in which they are embedded. Thus, homopeptide repeat may have structural, functional and evolutionary implications on proteins.

关键词： Homopeptide repeats Disordered regions Replication slippage Protein domains Rate of evolution

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