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Simultaneous analysis of the intestinal parasites and diet through eDnA metabarcoding

Integrative Zoology 2023年第3期18卷 399-413页

作者： Xabier CABODEVIllA benjamín Juan GÓMEZ-MOlInER naiara ABAD María JoséMADEIRA Department of Zoology and Animal Cell Biology Faculty of PharmacyUniversity of the Basque Country(UPV/EHU)AlavaSpain Instituto de Investigación en Recursos Cinegéticos(IREC)(CSIC-UClM-JCCM) Ciudad RealSpain

Agricultural expansion and intensiﬁcation are having a huge impact on plant and arthropod diversity and abun-dance,affecting food availability for farmland ***ﬁcult food access,in turn,can lead to immunosuppression and a higher incidence of *** the studies designed to examine changes in the diet of birds and their par-asites,metabarcoding is proving particularly *** technique requires mini-barcodes capable of amplifying the DnA of target organisms from fecal environmental *** help to understand the impact of agricultural expansion on biodiversity,this study sought to design and identify mini-barcodes that might simultaneously as-sess diet and intestinal parasites from the feces of farmland *** capacity to identify diet and parasites of 2 existing and 3 newly developed mini-barcodes was tested“in silico”in relation to the behavior of a reference eukaryotic *** the newly designed mini-barcodes,MiniB18S_81 showed the higher taxonomic cover-age of eukaryotic taxa and a greater ampliﬁcation and identiﬁcation capacity for diet and parasite ***,when it was tested on fecal samples from 5 different steppe bird species,MiniB18S_81 showed high taxonomic resolution of the most relevant diet and parasite phyla,Arthropoda,nematoda,Platyhelminthes,and Apicomplexa at the order ***,the mini-barcode developed emerges as an excellent tool to simultaneously provide detailed information regarding the diet and parasites of birds,essential for conservation and management.

关键词： biomonitoring broad-spectrum primers eukaryotic mini-barcodes fecal eDnA farmland birds parasitology

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Diagnostic value of sperm DnA fragmentation and sperm high-magnification for predicting outcome of assisted reproduction treatment

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Asian Journal of Andrology 2013年第6期15卷 790-794,I0008-I0009页

作者： Gemma lópez Rafael lafuente Miguel A Checa Ramón carreras Mario Brassesco Centre de Infertilidad y Reproduccion Humana (ClRH) E-08017 Barcelona Spain Department of Obstetrics and Gynecology Hospital Universitari del Mar Universitat AutOnoma de Barcelona E-08003 Barcelona Spain

Over the last years, major improvements in the field of male infertility diagnosis have been achieved. The aim of this study was to determine the diagnostic usefulness of sperm DnA integrity and sperm vacuolisation for predicting outcome in infertile couples undergoing in vitroferti lisation （IVF） and intracytoplasmic sperm injection （ICSI） treatments. A cohort study from 152 infertile couples undergoing sperm DnA fragmentation and high-magnification tests prior to an assisted reproduction treatment was designed. We found that the most predictive cutoff for pregnancy was 25.5% of DnA fragmentation with a negative predictive value of 72.7% （P=0.02）. For the degree of vacuolisation, the best predictor of pregnancy was 73.5% of vacuolated sperm grades Ⅲ ＋ Ⅳ with a negative predictive value of 39.4% （P=0.09）, which was not statistically significant. In conclusion, sperm DnA fragmentation greater than 25.5% could be associated with higher probability of failure IVF treatment. Regarding the results of the sperm analysis at high magnification, they do not allow us to predict whether or not oatients will become pregnant.

关键词： DnA fragmentation high-magnification IVF vacuoles

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Efficient Handling of lock Hand-off in DSM Multiprocessors with Buffering Coherence Controllers

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Journal of Computer Science & Technology 2012年第1期27卷 75-91页

作者： benjamín Sahelices Agustín de Dios Pablo Ibáez Víctor Vials-Yúfera José María llabería Computer Science Department and HiPEAC European network of Excellence University of Valladolid Valladolid Spain Computer Science and Systems Engineering Department I3A Research Institute and HiPEAC European Network of Excellence University of Zaragoza Zaragoza Spain Computer Architecture Department and HiPEAC European network of Excellence Polytechnic University of Catalua Barcelona Spain

Synchronization in parallel programs is a major performance bottleneck in multiprocessor systems. Shared data is protected by locks and a lot of time is spent on the competition arising at the lock hand-off. In order to be serialized, requests to the same cache line can either be bounced （nACKed） or buffered in the coherence controller. In this paper, we focus mainly on systems whose coherence controllers buffer requests. In a lock hand-off, a burst of requests to the same line arrive at the coherence controller. During lock hand-off only the requests from the winning processor contribute to progress of the computation, since the winning processor is the only one that will advance the work. This key observation leads us to propose a hardware mechanism we call request bypassing, which allows requests from the winning processor to bypass the requests buffered in the coherence controller keeping the lock line. We present an inexpensive implementation of request bypassing that reduces the time spent on all the execution phases of a critical section （acquiring the lock, accessing shared data, and releasing the lock） and which, as a consequence, speeds up the whole parallel computation. This mechanism requires neither compiler or programmer support nor ISA or coherence protocol changes. By simulating a 32-processor system, we show that using request bypassing does not degrade but rather improves performance in three applications with low synchronization rates, while in those having a large amount of synchronization activity （the remaining four）, we see reductions in execution time and in lock stall time ranging from 14% to 39% and from 52% to 7170, respectively. We compare request bypassing with a previously proposed technique called read combining and with a system that bounces requests, observing a significantly lower execution time with the bypassing scheme. Finally, we analyze the sensitivity of our results to some key hardware and software parameters.

关键词： distributed shared memory multiprocessors synchronization buffer coherence controller request bypass

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Relationship between HSP90a, nPC2 and l-PGDS proteins to boar semen freezability

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Journal of Animal Science and Biotechnology 2017年第3期8卷 582-591页

作者： Julián Valencia Germán Gómez Walter lópez Henry Mesa Francisco Javier Henao Universidad de Caldas Faculty of Agricultural Sciences A.A. 275 Manizales Caldas Colombia

Background： The purpose of this study was to determine the association of three proteins involved in sperm function on the freezability of porcine semen： the heat shock protein 90 alpha（HSP90a）, the niemann-Pick disease type C2 protein（nPC2）, and lipocalin-type prostaglandin D synthase（l-PGDS）.Six adult boars（each boar was ejaculated three times, 18 in total） were classified by freezability based on the percentage of functionally competent sperm. The male semen with highest freezability（MHF） and the male semen with lowest freezability（MlF） were centrifuged immediately after collection to separate seminal plasma and spermatozoa to make four possible combinations of these two components and to incubate them for 3 h,adjusting the temperature to 17 °C, to freeze them afterwards. The quantification of proteins was performed in two stages： at zero and at 3 h after incubation of the four ***： The spermatozoa × incubation time（IT） interaction only had effect（P 〈 0.01） on HSP90 a levels; this protein increased in seminal plasma, after 3 h of incubation, in larger quantity（P 〈 0.05） in combinations with MlF spermatozoa. In relation with the nPC2 protein, two isoforms of 16 and 19 kDa were identified. The 19 kDa isoform was affected（P 〈 0.01） only by the seminal plasma × IT interaction, with superior values（P 〈 0.01） both at zero and three hours of incubation, in the combinations with MHF seminal plasma; and 16 kDa isoform was affected（P 〈 0.01） only by the IT with reduction after 3 h of incubation. The levels of l-PGDS was affected（P 〈 0.01）only by the spermatozoa × IT interaction, which reduced（P 〈 0.01） in combinations with MlF spermatozoa after 3 h of ***： It is possible to consider that the three proteins evaluated were associated with freezability of boar semen due, especially, to the fact that mixtures with MlF spermatozoa showed greater increase levels of the HSP90 a protein and reduction of l-PGDS in plasma. In addition, the seminal

关键词： Boar freezability HSP90a l-PGDS nPC2 Semen preservation Seminal plasma

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From single to combinatorial therapies in spinal cord injuries for structural and functional restoration

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neural Regeneration Research 2025年第3期20卷 660-670页

作者： Ernesto Doncel-Pérez Gabriel Guízar-Sahagún Israel Grijalva-Otero Hospital nacional de Parapléjicos de Toledo Servicio de Salud de Castilla La Mancha(SESCAM)ToledoSpain Medical Research Unit for neurological Diseases UMAE Hospital de EspecialidadesCentro Médico Nacional Siglo XXIIMSSCiudad de MéxicoMéxico

Spinal cord injury results in paralysis, sensory disturbances, sphincter dysfunction, and multiple systemic secondary conditions, most arising from autonomic dysregulation. All this produces profound negative psychosocial implications for affected people, their families, and their communities;the financial costs can be challenging for their families and health institutions. Treatments aimed at restoring the spinal cord after spinal cord injury, which have been tested in animal models or clinical trials, generally seek to counteract one or more of the secondary mechanisms of injury to limit the extent of the initial damage. Most published works on structural/functional restoration in acute and chronic spinal cord injury stages use a single type of treatment: a drug or trophic factor, transplant of a cell type, and implantation of a biomaterial. Despite the significant benefits reported in animal models, when translating these successful therapeutic strategies to humans, the result in clinical trials has been considered of little relevance because the improvement, when present, is usually insufficient. Until now, most studies designed to promote neuroprotection or regeneration at different stages after spinal cord injury have used single treatments. Considering the occurrence of various secondary mechanisms of injury in the acute and sub-acute phases of spinal cord injury, it is reasonable to speculate that more than one therapeutic agent could be required to promote structural and functional restoration of the damaged spinal cord. Treatments that combine several therapeutic agents, targeting different mechanisms of injury, which, when used as a single therapy, have shown some benefits, allow us to assume that they will have synergistic beneficial effects. Thus, this narrative review article aims to summarize current trends in the use of strategies that combine therapeutic agents administered simultaneously or sequentially, seeking structural and functional restoratio

关键词： neural regeneration neuroprotection spinal cord injury repair spinal cord injury treatments structural restoration of spinal cord injury

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Stable niO-CeO_(2) nanoparticles with improved carbon resistance for methane dry reforming

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Journal of Rare Earths 2022年第1期40卷 57-62页

作者： Andrea Cárdenas-Arenas Esther Bailón-García Dolores lozano-Castelló Patrick Da Costa Agustín Bueno-lópez Department of Inorganic Chemistry University of AlicanteCarretera de San Vicente s/nE03080AlicanteSpain Sorbonne Universite Institut Jean Le Rond d'AlembertCNRS UMR 71902 place de la gare de ceinture78210Saint Cyr L'EcoleFrance

High surface area mixed oxide 8.7%niO-CeO_(2) nanoparticles(122 m2/g;6-7 nm)were prepared using a reversed microemulsion method,and were tested for dry methane reforming(DRM).The catalytic activity of these nanoparticles remains stable under the severe conditions of DRM(700℃),and they show better carbon resistance than conventional niO-CeO_(2) catalysts prepared without control of the *** activity and selectivity of nanoparticles and reference catalyst are similar,but nanoparticles reduce the accumulation of carbon by 63%during the DRM tests,which is a key feature for this *** and H_(2)-TPR suggest that the improved carbon resistance of the nanoparticles is due to the better interaction and cooperation between niO and CeO_(2) mixed *** nanoparticles,the participation of cerium cations in the redox processes taking place during DRM stabilizes cationic species of *** the contrary,the catalyst prepared without control of the size suffers segregation of ni during DRM reaction,and segregated ni explains the higher catalytic formation of carbon.

关键词： Methane dry reforming nickel Ceria nanoparticle Rare earths

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Would behavioral thermoregulation enable pregnant viviparous tropical lizards to cope with a warmer world?

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Integrative Zoology 2017年第5期12卷 379-395页

作者： Saúl lÓpez-AlCAIDE Miguel nAKAMURA Eric n.SMITH Enrique MARTÍnEZ-MEYER Departament of Zoology Institute of BiologyNational Autonomous University of MexicoMexico CityMexico Center for Research in Mathematics GuanajuatoMexico Amphibian and Reptile Diversity Research Center and Department of Biology University of Texas at ArlingtonArlingtonTexasUSA

Sceloporus lizards depend on external heat to achieve their preferred temperature(Tsel)for performing physiological *** both in the field and laboratory indicates that pregnant females of this Genus select body temperatures(Tb)lower than 34℃ as higher temperatures may be lethal to ***,thermoregulation is crucial for successful embryo *** the increase in global air temperature,it is expected that the first compensatory response of species that inhabit tropical climates will be behavioral *** tested whether viviparous Sceloporus formosus group lizards in the wild exhibited differences in thermoregulatory behavior to achieve the known Tsel for developing embryos regardless of local thermal *** quantified field active body temperature,thermoregulatory behavior mechanisms(time of sighting,microhabitat used and basking time)and available microhabitat thermal conditions(*** temperature)for 10 lizard species during gestation,distributed along an altitudinal *** applied both conventional and phylogenic analyses to explore whether Tb or behavioral thermoregulation could be regulated in response to different thermal *** species showed no significant differences in field Tb during gestation regardless of local thermal *** contrast,they exhibited significant differences in their behavioral thermoregulation associated with local environmental *** on these observations,the differences in thermoregulatory behavior identified are interpreted as compensatory adjustments to local thermal *** conclude that these species may deal with higher temperatures predicted for the tropics by modulating their thermoregulatory behavior.

关键词： altitudinal gradient behavior global warming Sceloporus formosus thermal stress

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Multiple sclerosis is at a checkpoint: advancing the program

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neural Regeneration Research 2025年第3期20卷 811-812页

作者： Brandon C.Smith Jessica l.Williams Department of neurosciences Lerner Research InstituteCleveland ClinicClevelandOHUSA Department of Biological Geologicaland Environmental SciencesCleveland State UniversityClevelandOHUSA

Multiple sclerosis(MS) is a chronic inflammatory and demyelinating disease of the central nervous system(CnS). Patients with MS experience sensory and motor function loss due to myelin and/or axon damage perpetuated b... 详细信息

关键词： Hauser sclerosis damage

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Generation of brain vascular heterogeneity:recent advances from the perspective of angiogenesis

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neural Regeneration Research 2025年第7期20卷 2013-2014页

作者： nathanael J.lee Ryota l.Matsuoka Department of neurosciences Lerner Research InstituteCleveland ClinicClevelandOHUSA Department of Molecular Medicine Cleveland Clinic Lerner College of MedicineCase Western Reserve UniversityClevelandOHUSA

Heterogeneous proper t i es of vascular endothelial cells in the brain:The brain displays large energy dynamics and consumption,and this high level of metabolic demands is fulfilled by a continuous supply of glucose and oxygen through its vascular *** vasculature consists of highly divergent blood vessel branches,giving rise to a dense network of capillaries that supply blood to all cells across the *** elaborated vascular network is thought to develop via angiogenesis,a process in which new blood vessels grow from pre-existing *** capillaries exhibit organotypic features distinct from other tissues and are formed primarily by two major endothelial cell(EC)types:those that form the semi-permeable blood-brain barrier(BBB)and those that develop highly permeable pores known as fenestrae(Matsuoka et al.,2022).The structural and functional differences between BBB and fenestrated vascular ECs represent a fundamental feature of brain vasculature and form the foundation for both brain function and homeostasis.

关键词： angiogenesis homeostasis network

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A new device for deep cervical artificial insemination in gilts reduces the number of sperm per dose without impairing final reproductive performance

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Journal of Animal Science and Biotechnology 2019年第2期10卷 402-409页

作者： Pedro J.llamas-lópez Rebeca lópez-úbeda Gustavo lópez Emily Antinoja Francisco A.García-Vázquez Department of Physiology Faculty of VeterinaryCampus Mare NostrumUniversity of Murcia30100 MurciaSpain Department of Cell Biology and Histology Faculty of MedicineCampus Mare NostrumUniversity of Murcia30100 MurciaSpain Institute for Biomedical Research of Murcia(IMIB-Arrixaca) MurciaSpain Cherkizovo Group LipetskRussia.

Background: The aim of this study was to evaluate the reproductive performance of a new artificial insemination(AI) device specifically designed for gilts(Deep cervical AI, Dp-CAI) by means of which the sperm is deposited deeply in the cervix(8 cm more cranial than in traditional cervical insemination-CAI). new AI techniques have arisen in recent decades in the porcine industry, such as post-cervical artificial insemination(PCAI), which involves depositing the sperm in the body of the uterus [through a catheter(outer tube)-cannula(inner tube)] rather than by CAI. Although the PCAI method has been successfully applied in farm conditions to reduce sperm doses without impairing the reproductive performance, this technique has limitations in gilts mainly because of the difficulty involved in introducing the inner cannula through the cranial part of the cervix. For this reason, the Dp-CAI method described herein may be considered as an alternative to CAI and PCAI methods in ***: Gilts were divided in two experimental groups: 1) Dp-CAI: gilts(n = 1166) inseminated using 1.5 × 109 sperm/45 m l;2) CAI(as a control group): gilts(n = 130) inseminated using 2.5 × 10~9 sperm/85 ml. The Dp-CAI method was successfully applied in 88.90% of the gilts, with no differences detected between gilts with 1 or 2 previous oestrus cycles, although the catheter could be introduced more deeply in 2 oestrus gilts(P length of the insemination device that could not be introduced increased(at the moment of insemination), so the success rate of the Dp-CAI device fell, as did the total number of piglets born. When the reproductive output in CAI and Dp-CAI was compared, none of the parameters analysed [pregnancy and farrowing rates(%), and number of piglets born(total and live)] showed significant ***: The use of the Dp-CAI technique provides a new AI method as an alternative to CAI and PCAI for pigs. The device, especially designed for gilts, was used w

关键词： Cervix Intrauterine nulliparous Porcine Post-cervical insemination

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