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PagMYB128 regulates secondary cell wall formation by direct activation of cell wall biosynthetic genes during wood formation in poplar

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journal of Integrative Plant Biology 2024年第8期66卷 1658-1674页

作者： Yuanyuan Hao Fachuang Lu Seung-Won Pyo Min-Ha Kim jae-Heung Ko Xiaojing Yan john ralph Quanzi Li State Key Laboratory of Tree Genetics and Breeding Chinese Academy of ForestryBeijing 100091China Department of Biochemistry and DOE Great Lakes Bioenergy Research Center Wisconsin Energy InstituteUniversity of Wisconsin-MadisonWisconsin 53726USA Department of Plant&Environmental New Resources Kyung Hee UniversityYongin 17104Korea

The biosynthesis of cellulose,lignin,and hemicelluloses in plant secondary cell walls(SCWs)is regulated by a hierarchical transcriptional regulatory *** network features orthologous transcription factors shared between poplar and Arabidopsis,highlighting a foundational similarity in their genetic ***,knowledge on the discrepant behavior of the transcriptional-level molecular regulatory mechanisms between poplar and Arabidopsis remains *** this study,we investigated the function of PagMYB128 during wood formation and found it had broader impacts on SCW formation compared to its Arabidopsis ortholog,*** poplar trees overexpressing PagMYB128 exhibited significantly enhanced xylem development,with fiber cells and vessels displaying thicker walls,and an increase in the levels of cellulose,lignin,and hemicelluloses in the *** contrast,plants with dominant repression of PagMYB128 demonstrated the opposite *** sequencing and reverse transcription–quantitative polymerase chain reaction showed that PagMYB128 could activate SCW biosynthetic gene expression,and chromatin immunoprecipitation along with yeast one-hybrid,and effector–reporter assays showed this regulation was *** analysis revealed that PagSND1(SECONDARY WALL-ASSOCIATED NAC-DOMAIN PROTEIN1)directly regulates PagMYB128 but not cell wall metabolic genes,highlighting the pivotal role of PagMYB128 in the SND1-driven regulatory network for wood development,thereby creating a feedforward loop in SCW biosynthesis.

关键词： cellulose hemicellulose lignin PagMYB128 Populus transcription factor wood formation

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Haplotype-based phylogenetic analysis and population genomics uncover the origin and domestication of sweetpotato

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Molecular Plant 2024年第2期17卷 277-296页

作者： Mengxiao Yan Ming Li Yunze Wang Xinyi Wang M-Hossein Moeinzadeh Dora G.Quispe-Huamanquispe Weijuan Fan Yijie Fang Yuqin Wang Haozhen Nie Zhangying Wang Aiko Tanaka Bettina Heider jan F.Kreuze Godelieve Gheysen Hongxia Wang Martin Vingron ralph Bock jun Yang Shanghai Key Laboratory of Plant Functional Genomics and Resources Shanghai Chenshan Botanical GardenShanghai 201602China College of Life Sciences Chongqing Normal UniversityChongqing 401331China Biotechnology and Nuclear Technology Research Institute Sichuan Academy of Agricultural SciencesChengdu 610061China College of Life Sciences Shanghai Normal UniversityShanghai 200234China Department of Computational Molecular Biology Max Planck Institute for Molecular GeneticsIhnestraBe 63-7314195 BerlinGermany Department of Biotechnology Ghent University9000 GhentBelgium Guangdong Provincial Key Laboratory of Crops Genetics and Improvement Crop Research InstituteGuangdong Academy of Agricultural SciencesGuangzhou 510640China Graduate School of Bioagricultural Sciences Nagoya UniversityChikusaNagoya 464-8601Japan international Potato Center(CIP) LimaPeru CAS Center for Excellence of Molecular Plant Sciences Institute of Plant Physiology and EcologyChinese Academy of SciencesShanghai 200233China Max-Planck-Institut fur Molekulare Pflanzenphysiologie Am Muhlenberg 114476 Potsdam-GolmGermany

The hexaploid sweetpotato(lpomoea batatas)is one of the most important root crops ***,its genetic origin remains controversial,and its domestication history remains *** this study,we used a range of genetic evidence and a newly developed haplotype-based phylogenetic analysis to identify two probable progenitors of *** diploid progenitor was likely closely related to lpomoea ae-quatoriensis and contributed the B,subgenome,IbT-DNA2,and the lineage 1 type of chloroplast genome to *** tetraploid progenitor of sweetpotato was most likely *** 4x,which donated the B2 subgenome,IbT-DNA1,and the lineage 2 type of chloroplast *** most likely originated from reciprocal crosses between the diploid and tetraploid progenitors,followed by a subsequent whole-genome *** addition,we detected biased gene exchanges between the subgenomes;the rate of B,to B2 subgenome conversions was nearly three times higher than that of B2 to B subgenome *** analyses revealed that genes involved in storage root formation,maintenance of genome stabil-ity,biotic resistance,sugar transport,and potassium uptake were selected during the speciation and domestication of *** study sheds light on the evolution of sweetpotato and paves the way forimprovementofthiscrop.

关键词： sweetpotato origin gene conversion domestication IbT-DNA HPA

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Penile reconstruction

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Asian journal of Andrology 2013年第1期15卷 16-19页

作者： Giulio Garaffa Salvatore Sansalone David j ralph St Peter's Andrology London WIG 6B J UK Tor Vergata University Rome 00133 Italy

During the most recent years, a variety of new techniques of penile reconstruction have been described in the literature. This paper focuses on the most recent advances in male genital reconstruction after trauma, excision of benign and malignant disease, in gender reassignment surgery and aphallia with emphasis on surgical technique, cosmetic and functional outcome.

关键词： female to male transsexuals fibrosis free flaps glans reconstruction glans sculpture lichen sclerosus lymphoedema of the genitalia penile prosthesis Peyronie's disease phalloplasty scrotoplasty shaft reconstruction skin graft penile reconstruction

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Between a Rock and a Dry Place： The Water-Stressed Moss

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Molecular Plant 2009年第3期2卷 478-486页

作者： Audra j. Charron ralph S. Quatrano Department of Biology Washington University in St Louis 1 Brookings Dr. St Louis MO 63130 USA

The earliest land plants faced a suite of abiotic stresses largely unknown to their aquatic algal ancestors. The descendants of these plants evolved two general mechanisms for survival in the relatively arid aerial environment. While the vascular plants or ＇tracheophytes＇ developed tissue specializations to transport and retain water, the other main lineages of land plants, the bryophytes, retained a simple, nonvascular morphology. The bryophytes--mosses, hornworts, and liverworts--continually undergo a co-equilibration of their water content with the surrounding environment and rely to a great extent on intrinsic cellular mechanisms to mitigate damage due to water stress. This short review will focus on the cellular and molecular responses to dehydration and rehydration in mosses, and offer insights into general plant responses to water stress.

关键词： Abiotic/environmental stress ABA poikilohydry Tortula ruralis bryophytes Physcomitrella patens.

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Phalloplasty following penectomy for penile cancer

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Asian journal of Urology 2022年第4期9卷 460-466页

作者： Wai Gin Lee A.Nim Christopher David j.ralph University College London Hospital LondonUnited Kingdom St Peter’s Andrology LondonUnited Kingdom

Objective:Penile reconstruction or phalloplasty following penectomy can be offered where the functional penile length is inadequate for a man to void while standing or to have sexual *** is usually staged due to the complex surgical techniques *** narrative review describes the technical concepts and summarises the contemporary outcomes following phalloplasty in this challenging ***:A retrospective review of the English literature was performed between january 1946 till November *** data were synthesised and complemented by the expert opinion of the authors with 20 years of experience in this *** flaps are ideally designed with an integrated urethra or alternatively,a further free flap urethroplasty can be ***-plasty is further complicated following penectomy by scarring from the previous surgery and the potential loss of structures that would normally be present at the recipient ***:There are limited published data with a total of 19 men recorded in the *** the radial artery forearm free flap and anterolateral thigh flap have been described in this cohort of *** outcomes including standing micturition,sensation in the neo-phallus,and the ability to orgasm are *** quality of life and satisfaction was also good despite the high risk for long-term complications of the neophallus and donor ***:Phalloplasty following penectomy requires microsurgical transfer of a free flap or a pedicled flap to reconstruct a *** erectile device is inserted at a later stage to facilitate sexual intercourse,if *** scarring from penectomy and the potential loss of vasculature that would normally be present at the recipient site may further complicate *** and functional outcomes are acceptable based on the limited published experience to date.

关键词： Humans Male Myocutaneous flap or transplantation Penis or surgery Phalloplasty Reconstructive surgical procedures Retrospective study Surgical flap Thigh or surgery Treatment outcome Urethra or surgery

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New advances in visual computing for intelligent processing of visual media and augmented reality

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Science China(Technological Sciences) 2015年第12期58卷 2210-2211页

作者： WANG juHong ZHANG SongHai MARTIN ralph R. Department of Computer Science and Technology Tsinghua University School of Computer Science & Informatics Cardiff University

Visual imagery constitutes the most important sensory information for *** entire field of acquiring,analyzing and synthesizing visual data by means of computers is called visual *** has an extraordinarily wide range of applications,including for example:industrial quality control,street view and driver assistance systems,robot navigation,multimedia systems,and computer games.

关键词： Augmented reality Intelligent computing

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Management of residual penile curvature after penile prosthesis placement

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Asian journal of Andrology 2021年第2期23卷 129-134页

作者： Denis V Krakhotkin David j ralph Gideon A Blecher Volodymyr A Chernylovskyi Francesco Greco Evgeny E Bakurov Ruslan A Bugaev Central District Hospital Outpatient DepartmentKamenolomniRostov Region 346480Russia University College London St Peter’s Andrology Centre and University College London Hospitals London W1G 6BJUnited Kingdom Monash University Department of SurgeryMelbourne 3168Australia The Alfred Hospital Department of UrologyMelbourne 3004Australia Department of Urology 1 City Clinical Hospital No.4Dnipro 49102Ukraine Department of Urology Humanitas GavazzeniBergamo 24125Italy Department of Surgery No.1 Rostov Regional Hospital ROKB 1Rostov-on-Don 344015Russia

Residual penile curvature is a common situation following the implantation of a penile prosthesis in patients with Peyronie’s ***,there is a variety of options for the correction of residual curvature,including penile modeling,plication techniques,as well as tunical incision/excision with or without grafting.A literature search of PubMed and Medline databases was conducted from 1964 until 2020,using search terms for all articles in the English *** this article,we provide a review of the techniques and the outcomes,according to the published literature.

关键词： grafting modeling penile curvature penile implant penile prosthesis Peyronie’s disease tunical plication

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3D printing of patient-specific implants for osteochondral defects: workflow for an MRI-guided zonal design

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Bio-Design and Manufacturing 2021年第4期4卷 818-832页

作者： David Kilian Philipp Sembdner Henriette Bretschneider Tilman Ahlfeld Lydia Mika jörg Lützner Stefan Holtzhausen Anja Lode ralph Stelzer Michael Gelinsky Centre for Translational Bone Joint and Soft Tissue ResearchUniversity Hospital Carl Gustav Carus and Faculty of MedicineTechnische Universität DresdenDresdenGermany Institute of Machine Elements and Machine Design Faculty of Mechanical EngineeringTechnische Universität DresdenDresdenGermany University Center of Orthopaedic Trauma and Plastic SurgeryUniversity Hospital Carl Gustav CarusTechnische Universität DresdenDresdenGermany

Magnetic resonance imaging(MRI)is a common clinical practice to visualize defects and to distinguish different tissue types and pathologies in the human *** far,MRI data have not been used to model and generate a patient-specific design of multilayered tissue substitutes in the case of interfacial *** orthopedic cases that require highly individual surgical treatment,implant fabrication by additive manufacturing holds great ***-based techniques like 3D plot-ting allow the spatially defined application of several materials,as well as implementation of bioprinting *** the example of a typical multi-zonal osteochondral defect in an osteochondritis dissecans(OCD)patient,this study aimed to close the technological gap between MRI analysis and the additive manufacturing process of an implant based on dif-ferent biomaterial inks.A workflow was developed which covers the processing steps of MRI-based defect identification,segmentation,modeling,implant design adjustment,and implant generation.A model implant was fabricated based on two biomaterial inks with clinically relevant properties that would allow for bioprinting,the direct embedding of a patient’s own cells in the printing *** demonstrated by the geometric compatibility of the designed and fabricated model implant in a stereolithography(SLA)model of lesioned femoral condyles,a novel versatile CAD/CAM workflow was successfully established that opens up new perspectives for the treatment of multi-zonal(osteochondral)defects.

关键词： Additive manufacturing(AM) Magnetic resonance imaging(MRI) Computer-aided design(CAD) Osteochondritis dissecans(OCD) Bone cement Hydrogel

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Trends of Extreme Precipitation in Eastern China and Their Possible Causes

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Advances in Atmospheric Sciences 2015年第8期32卷 1027-1037页

作者： LIU Run LIU Shaw Chen ralph j.CICERONE SHIU Chein-jung LI jun WANG jingli ZHANG Yuanhang State Key joint Laboratory of Environmental Simulation and Pollution Control College of Environmental Sciences and Engineering Peking University Research Center for Environmental Changes Academia Sinica Department of Atmospheric Science NCU National Academy of Sciences Earth System Science University of California Institute of Urban Meteorology of China Meteorological Administration

Significant increases of heavy precipitation and decreases of light precipitation have been reported over widespread regions of the globe. Global warming and effects of anthropogenic aerosols have both been proposed as possible causes of these changes. We examine data from urban and rural meteorological stations in eastern China （1955-2011） and compare them with Global Precipitation Climatology Project （GPCP） data （1979-2007） and reanalysis data in various latitude zones to study changes in precipitation extremes. Significant decreases in light precipitation and increases in heavy precipitation are found at both rural and urban stations, as well as low latitudes over the ocean, while total precipitation shows little change. Characteristics of these changes and changes in the equatorial zone and other latitudes suggest that global warming rather than aerosol effects is the primary cause of the changes. In eastern China, increases of annual total dry days （28 days） and ） 10 consecutive dry days （36%） are due to the decrease in light precipitation days, thereby establishing a causal link among global warming, changes in precipitation extremes, and higher meteorological risk of floods and droughts. Further, results derived from the GPCP data and reanalysis data suggest that the causal link exists over widespread regions of the globe.

关键词： extreme precipitation global warming aerosols meteorological risk of floods and droughts

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Single-molecule DNA sequencing using two-dimensionalTi2C(OH)2 MXene nanopores: A first-principles investigation

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Nano Research 2022年第11期15卷 9843-9849页

作者： jariyanee Prasongkit Sirichok jungthawan Rodrigo G.Amorim ralph H.Scheicher Division of Physics Faculty of ScienceNakhon Phanom UniversityNakhon Phanom 48000Thailand School of Physics Institute of ScienceSuranaree University of Technology111 University AveNakhon Ratchasima 30000Thailand Center of Excellence in Advanced Functional Materials Suranaree University of TechnologyNakhon Ratchasima 30000Thailand Thailand Center of Excellence in Physics Ministry of Higher EducationScienceResearch and Innovation328 Si Ayutthaya RoadBangkok 10400Thailand Departamento de Física ICExUniversidade Federal Fluminense-UFFVolta Redonda/RJ 27213-145Brazil Division of Materials Theory Department of Physics and AstronomyUppsala UniversityUppsala SE-75120Sweden

Nanopore-based devices have provided exciting opportunities to develop affordable label-free DNA sequencing *** a decade ago,graphene has been proposed as a two-dimensional(2D)nanopore membrane in order to achieve single-base ***,it was experimentally revealed that clogging of the graphene nanopore can occur due to the hydrophobic nature of graphene,thus hindering the translocation of *** overcome this problem,the exploration of alternative 2D materials has gained considerable interest over the last *** we show that a Ti_(2)C-based MXene nanopore functionalized by hydroxyl groups(–OH)exhibits transverse conductance properties that allow for the distinction between all four naturally occurring DNA *** have used a combination of density functional theory and non-equilibrium Green’s function method to sample over multiple orientations of the nucleotides in the nanopore,as generated from molecular dynamics *** conductance variation resulting from sweeping an applied gate voltage demonstrates that the Ti_(2)C-based MXene nanopore possesses high potential to rapidly and reliably sequence *** findings open the door to further theoretical and experimental explorations of MXene nanopores as a promising 2D material for nanopore-based DNA sensing.

关键词： nanopore DNA sequencing MXenes first-principles quantum transport

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