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Effect of biochar on the metabolome of soybean seedlings

Oil Crop Science 2024年第1期9卷 60-68页

作者： Nathalia E.Silva mariana G.Aguilar Osania E.Ferreira gleicia m.paulino Jaqueline C.L.Carvalho Lúcia P.S.Pimenta Alan R.T.machado Programa de Pos-graduaçao em Ciencias Ambientais Universidade do Estado de Minas GeraisFrutalMinas Gerais38202-436Brazil Departamento de Química Universidade Federal de Minas GeraisMinas GeraisBelo Horizonte31270-901Brazil Departamento de Engenharia Aplicada e Tecnologias Ambientais Universidade do Estado de Minas GeraisJoao MonlevadeMinas Gerais35930-314Brazil Departamento de Ciencias Exatas Universidade do Estado de Minas GeraisJoao MonlevadeMinas Gerais35930-314Brazil

The use of biochar can have several effects on plant germination,depending on raw material,preparation method and application ***,the molecular mechanisms that lead to those results have yet to be *** aim of this research was to improve the understanding of these mechanisms by characterizing the metabolic effects of sugarcane bagasse biochar on soybean *** types of biochars were prepared by pyrolysis at 300℃(SCB300),400℃(SCB400)and 600℃(SCB600).Then,each one was mixed into sand at 1%,3%,5%(w/w)dose,*** experiment was performed in 8 days of incubation,when the number of germinated seeds and the average radicle length were *** evaluate the metabolome,the dry biomass(DB)was subjected to extraction with a mixture of methanol-d4 and D2O(1:1 v/v).The extracts were submitted to metabolomics analysis by Proton Nuclear magnetic *** Relative Germination,Relative Average Radicle Growth and Germination Index increased in all treatments compared to *** the other hand,the DB increased in all treatments,except for SCB300,at doses of 1%and 3%w/*** metabolites(alanine,asparagine,acetic acid,citric acid,glycerol,fatty acids and sucrose)were identified and quantified in DB extracts as the most influential finding for the separation of *** together,these results strongly suggested that biochars accelerated the catabolism of triacylglycerols to sucrose and induced a slight osmotic stress.

关键词： Germination metabolomics 1H NmR Pyrolysis Sugarcane bagasse

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Ballistic response of armour plates using Generative Adversarial Networks

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Defence Technology（防务技术） 2022年第9期18卷 1513-1522页

作者： S.Thompson F.Teixeira-Dias m.paulino A.Hamilton Institute for Infrastructure and Environment(IIE) School of EngineeringThe University of Edinburgh Alexander Graham Bell BuildingThe King's BuildingsEdinburghEH93FGUnited Kingdom School of Engineering Faculty of ScienceEngineering and Built EnvironmentDeakin University Waurn PondsVictoria3220Australia Data Science and AI EngineeringGroup Chief Information O CeLloyds Banking Group69 Morrison StEdinburghEH38BWUnited Kingdom

It is important to understand how ballistic materials respond to impact from projectiles such that informed decisions can be made in the design process of protective armour systems. Ballistic testing is a standards-based process where materials are tested to determine whether they meet protection, safety and performance criteria. For the V50ballistic test, projectiles are fired at different velocities to determine a key design parameter known as the ballistic limit velocity(BLV), the velocity above which projectiles perforate the target. These tests, however, are destructive by nature and as such there can be considerable associated costs, especially when studying complex armour materials and systems. This study proposes a unique solution to the problem using a recent class of machine learning system known as the Generative Adversarial Network(GAN). The GAN can be used to generate new ballistic samples as opposed to performing additional destructive experiments. A GAN network architecture is tested and trained on three different ballistic data sets, and their performance is compared. The trained networks were able to successfully produce ballistic curves with an overall RmSE of between 10 and 20 % and predicted the V50BLV in each case with an error of less than 5 %. The results demonstrate that it is possible to train generative networks on a limited number of ballistic samples and use the trained network to generate many new samples representative of the data that it was trained on. The paper spotlights the benefits that generative networks can bring to ballistic applications and provides an alternative to expensive testing during the early stages of the design process.

关键词： machine learning Generative Adversarial Networks GAN Terminal ballistics Armour systems

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A genetic linkage map of the threatened catfish Lophiosilurus alexandri:Inferences on effective population size

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Aquaculture and Fisheries 2023年第6期8卷 689-694页

作者： m.Raquel m.Coimbra Renata da S.Farias Bruno C.N.Rda Silva Andres Blanco miguel Hermida Armando Caballero michael Bekaert paulino martinez Department of Fisheries and Aquaculture Federal Rural University of PernambucoRua Dom Manuel de MedeirosS/nDois IrmaosRecifePE52171-900Brazil Department of Zoology Genetics and Physical AnthropologyACUIGEN GroupFaculty of VeterinaryUniversity of Santiago de Compostel1Campus of LugoLugo27002Spain Center of marine Research University of VigoFaculty of BiologyVigo36310Spain Institute of Aquaculture University of StirlingScotlandFK94LAUnited Kingdom

We report the first genetic linkage map of the catfish Lophiosilurus alexandri,a South American threatened and promising aquaculture catfish *** the progeny of three full-sib families,with 141,74,and 49 offspring,respectively,we could genotype 2351 SNP markers using the ddRAD technology,shared by the male and the female maps *** averaged,female and male maps spanned a total length of 2201.3 cm,2481.9 cm,and 1872.8 cm,respectively,and comprehended the expected 27 linkage groups according to the karyotype information of the species(2n=54).The recombination rate was nearly twice higher in the female than in the male *** average map was used to estimate the historical effective population size(Ne)of the species from linkage disequilibrium between pairs of SNPs using parental individuals and revealed a remarkable drop in Ne about 20-25 generations in the *** construction of the biggest artificial reservoir in Latin America and associated nutrient retention is pointed as a possible reason for such a reduction and suggests a reevaluation of the conservation status of the *** current map lays the groundwork for understanding the genetic basis of economically important traits in breeding programs and will be useful for the genome assembly of this important commercial species.

关键词： breeding linkage size

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Genomic prediction of the performance of hybrids and the combining abilities for line by tester trials in maize

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The Crop Journal 2022年第1期10卷 109-116页

作者： Ao Zhang paulino Pérez-Rodríguez Felix San Vicente Natalia Palacios-Rojas Thanda Dhliwayo Yubo Liu Zhenhai Cui Yuan Guan Hui Wang Hongjian Zheng michael Olsen Boddupalli m.Prasanna Yanye Ruan Jose Crossa Xuecai Zhang College of Biological Science and Technology Shenyang Agricultural UniversityShenyang 110866LiaoningChina b International maize and Wheat Improvement Center(CImmYT) El BatanTexcoco 56237Mexico CImmYT-China Specialty maize Research Center Shanghai Academy of Agricultural SciencesShanghai 200063China Colegio de Postgraduados Estado De MéxicoMexico Crop Breeding and Cultivation Research Institute Shanghai Academy of Agricultural SciencesShanghai 200063China International maize and Wheat Improvement Center(CImmYT) P.O.Box 1041Village MarketNairobi 00621Kenya

The two most important activities in maize breeding are the development of inbred lines with high values of general combining ability(GCA)and specific combining ability(SCA),and the identification of hybrids with high yield *** selection(GS)is a promising genomic tool to perform selection on the untested breeding material based on the genomic estimated breeding values estimated from the genomic prediction(GP).In this study,GP analyses were carried out to estimate the performance of hybrids,GCA,and SCA for grain yield(GY)in three maize line-by-tester trials,where all the material was phenotyped in 10 to 11 multiple-location trials and genotyped with a mid-density molecular marker *** showed that the prediction abilities for the performance of hybrids ranged from 0.59 to0.81 across all trials in the model including the additive effect of lines and *** the model including both additive and non-additive effects,the prediction abilities for the performance of hybrids were improved and ranged from 0.64 to 0.86 across all *** prediction abilities of the GCA for GY were low,ranging between-0.14 and 0.13 across all trials in the model including only inbred lines;the prediction abilities of the GCA for GY were improved and ranged from 0.49 to 0.55 across all trials in the model including both inbred lines and testers,while the prediction abilities of the SCA for GY were negative across all *** prediction abilities for GY between testers varied from-0.66 to 0.82;the performance of hybrids between testers is difficult to *** offers the opportunity to predict the performance of new hybrids and the GCA of new inbred lines based on the molecular marker information,the total breeding cost could be reduced dramatically by phenotyping fewer multiple-location trials.

关键词： maize Genomic selection Line-By-Tester General combining ability Specific combining ability

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Effects of N-acetylcysteine on growth,viability and reactive oxygen species levels in small antral follicles cultured in vitro

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Asian pacific Journal of Reproduction 2023年第1期12卷 42-48页

作者： Efigênia B.Cordeiro Bianca R.Silva Laís R.F.m.paulino Pedro A.A.Barroso Laryssa G.Barrozo miguel F.de Lima Neto JoséR.V.Silva Laboratory of Biotechnology and Physiology of Reproduction Federal University of CearaAv.Comandante Maurocélio Rocha Ponte 10062041-040SobralCEBrazil

Objective:To investigate the effects of different concentrations of N-acetylcysteine on follicular growth and morphology,as well as on viability,levels of reactive oxygen species(ROS)and meiotic progression of oocytes from in vitro cultured bovine early antral ***:Isolated early antral follicles(about 500μm)were cultured in TCm-199+alone or supplemented with 1.0,5.0 or 25.0 mm N-acetylcysteine at 38.5℃with 5%CO_(2) for 8 *** diameters were evaluated at day 0,4 and 8 of *** the end of culture,the levels of ROS,chromatin configuration and viability(calcein-Am and ethidium homodimer-1 staining)were investigated in the cumulus-oocyte *** of follicle diameters between treatments were *** on percentages of morphologically normal follicles,growth rates and chromatin configuration in different treatments were ***:An increase in follicular diameters after culture in all treatments was observed,except for follicles cultured with 25.0 mm *** microscopy showed that oocytes cultured in all treatments were stained positively with calcein Am,and that 5.0 mm N-acetylcysteine reduced fluorescence for ethidium *** levels of ROS in oocytes from follicles cultured with 1.0 mm N-acetylcysteine showed a significant reduction compared to other *** presence of N-acetylcysteine in culture medium did not influence the rates of oocyte at the germinal vesicle ***:N-acetylcysteine at concentrations of 1.0 and 5.0 mm reduces ROS levels and staining for ethidium homodimer-1 in in vitro cultured follicles,respectively,while 25.0 mm N-acetylcysteine decreases follicular growth and the percentages of continuously growing follicles.

关键词： Antioxidant N-acetylcysteine Antral follicles Bovine Reactive oxygen species

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Vitellogenin content in fat body and ovary homogenates of workers and queens of melipona quadrifasciata anthidioides during vitellogenesis

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Insect Science 2012年第2期19卷 213-219页

作者： Vagner Tadeu Paes de Oliveira Bruno Berger Carminda da Cruz-Landim Zila Luz paulino Simoes Departamento de Biologia Instituto de Biociencias de Rio ClaroUNESP-Univ.Bela VistaRio ClaroSao Paulo Departamento de Biologia FFFL de Ribeirao PretoUniversidade de Sao PauloUSPSao PauloBrazil

Vitellogenin （Vg） is an egg yolk protein that is produced primarily in the fat body of most female insects. In the advanced social structure of eusocial honeybees, the presence of the queen inhibits egg maturation in the workers＇ ovaries. However in the stingless bee melipona quadrifasciata, the workers always develop ovaries and lay a certain amount of eggs while provisioning the brood cells with larval food during what is known as the worker nurse phase. The present work is a comparative study of the presence of Vg in homogenates of the fat bodies and ovaries of the nurse workers, and the virgin and physogastric queens of m. quadrifasciata. The presence of Vg was determined by sodium dodecyl sulfate polyacrylamide gel electrophoresis and irnmunoblotting using Apis mellifera anti-egg antibody. Vg was not detected in the fat bodies or ovaries of the workers, but it was found in the ovaries of virgin and physogastric queens and in the fat body ofphysogastric queens. The results are discussed, taking into account the reproductive state of the individuals and the other possible roles of Vg, such as a storage protein for metoabolism of other organs.

关键词： egg yolk electrophoresis immunoblotting nurse worker stingless bee virginand physogastric queen

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mETA-R:A software to analyze data from multi-environment plant breeding trials

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The Crop Journal 2020年第5期8卷 745-756页

作者： Gregorio Alvarado Francisco m.Rodríguez Angela Pacheco Juan Burgueño JoséCrossa mateo Vargas paulino Pérez-Rodríguez marco A.Lopez-Cruz Biometrics and Statistics Unit International Maize and Wheat Improvement Center(CIMMYT)MexicoDF 6-64106600Mexico Centro de Investigación en matemáticas(CImAT)A.C. Jalisco S/NCol.ValencianaGuanajuatoGto 40236023Mexico Universidad Autónoma Chapingo Carretera Federal México-Texcoco km 38.5TexcocoMéxico 6356230Mexico Colegio de Postgraduados Carretera México-Texcoco Km.36.5MontecilloTexcoco 6356231Mexico Department of Plant Soil and Microbial SciencesMichigan State University1066 Bogue StEast LansingMI 48824USA

mETA-R(multi-environment trial analysis in R)is a suite of R scripts linked by a graphical user interface(GUI)designed in Java *** objective of mETA-R is to accurately analyze multi-environment plant breeding trials(mETs)by fitting mixed and fixed linear models from experimental designs such as the randomized complete block design(RCBD)and the alpha-lattice/lattice ***-R simultaneously estimates the best linear and unbiased estimators(BLUEs)and the best linear and unbiased predictors(BLUPs).Additionally,it computes the variance-covariance parameters,as well as some statistical and genetic parameters such as the least significant difference(LSD)at 5%significance,the coefficient of variation in percentage(CV),the genetic variance,and the broad-sense *** parameters are very important in the selection of top performing genotypes in plant ***-R also computes the phenotypic and genetic correlations among environments and between traits,as well as their statistical *** genetic correlations between environments or traits can be visualized in a biplot graph or a tree diagram(dendrogram).Genetic correlations are very important for identifying environments with similar behavior or making indirect selection and identifying the most highly associated ***-R performs multi-environment analyses by using the residual maximum likelihood(REmL)method;these analyses can be done by environment,across environments by grouping factors(stress conditions,nitrogen content,etc.)and across environments;the analyses across environments can be done with a pre-defined degree of heritability.

关键词： environments breeding variance

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Bayesian regularized quantile regression:A robust alternative for genome-based prediction of skewed data

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The Crop Journal 2020年第5期8卷 713-722页

作者： paulino Pérez-Rodríguez Osval A.montesinos-López Abelardo montesinos-López JoséCross Colegio de Postgraduados MontecillosEdo.de México 56230Mexico Facultad de Telemática Universidad de ColimaColima 28040Mexico Departamento de matemáticas Centro Universitario de Ciencias Exactas e Ingenierías(CUCEI)Universidad de GuadalajaraGuadalajaraJalisco 44430Mexico International maize and Wheat Improvement Center(CImmYT) Km 45 Carretera México-VeracruzTexcocoEdo.de México 56237Mexico

Genomic prediction(GP)has become a valuable tool for predicting the performance of selection candidates for the next breeding cycle.A vast majority of statistical linear models on which GP is based rely on the assumption of normality of the residuals and therefore on the response variable *** this study,we propose to use Bayesian regularized quantile regression(BRQR)in the context of GP;the model has been successfully used in other research *** evaluated the prediction ability of the proposed model and compared it with the Bayesian ridge regression(BRR;equivalent to genomic best linear unbiased predictor,GBLUP).In addition,BLUP can be used with pedigree information obtained from the coefficient of coancestry(ABLUP).We have found that the prediction ability of BRQR is comparable to that of BRR and,in some cases,better;it also has the potential to efficiently deal with outliers.A program written in the R statistical package is available as Supplementary material.

关键词： Laplace distribution Robust regression Bayesian quantile regression Genomic-enabled prediction

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Intake,digestibility and nitrogen utilization in cattle fed tropical forage and supplemented with protein in the rumen,abomasum,or both

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Journal of Animal Science and Biotechnology 2016年第4期7卷 544-553页

作者： Luana marta de Almeida Rufino Edenio Detmann Daianyíris Gomes William Lima Santiago dos Reis Erick Darlisson Batista Sebastiao de Campos Valadares Filho mário Fonseca paulino Department of Animal Science Universidade Federal de Viaosa Department of Animal Science Universidade Federal Rural da Amaznia

Background： There is little information in the tropics with regard the comparative understanding of how an increased nitrogen supply in the rumen or in the intestines affects efficiency of nitrogen utilization in cattle. This study evaluated the effects of supplementation with nitrogenous compounds in the rumen, abomasum, or both on intake, digestibility and the characteristics of nitrogen utilization in cattle fed tropical forage. Four rumen- and abomasum-fistulated Nellore bulls （227 ± 11 kg） were used. Four treatments were evaluated： control, ruminal supplementation （230 g/d of supplemental protein in the rumen）, abomasal supplementation （230 g/d of supplemental protein in the abomasum）, and ruminal and abomasal supplementation （115 g/d protein in both the rumen and the abomasum）. The basal forage diet consisted of Tifton 85 hay with a crude protein （CP） level of 78.4 g/kg dry matter. Casein was used as a supplement. The experiment was conducted using a 4 x 4 Latin square. Results： There were no differences between the treatments （P 〉 0.10） with regard to forage intake. The intake and tota digestibility of CP increased （P 〈 0.01） with supplementation. The nitrogen balance in the body increased （P 〈 0.01） and muscle protein mobilization decreased （P 〈 0.01） with supplementation, regardless of the supplementation site. The efficiency of nitrogen utilization did not differ among the treatments （P 〉 0.10）. Conclusions： The supplementation of cattle fed tropical forage with protein in the rumen, abomasum, or both similarly increased the nitrogen accretion in animal, which reflects improvements on nitrogen status in animal body.

关键词： Casein Nitrogen balance Rumen ammonia nitrogen Supplementation 3-methylhistidine

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When a 17-Year-Old Girl Is Diagnosed with myalgic Encephalomyelitis: A Case Study from the Swedish Health Care System—A Parent Perspective

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Case Reports in Clinical medicine 2022年第8期11卷 280-296页

作者： Eva Bojner Horwitz Jonas Axelsson Olli Polo Leif Widebert T&ouml res Theorell Anabelle paulino David Ullman Jonas Bergquist Department of music Pedagogy and Society Royal College of Music Stockholm Sweden Department of Clinical Neuroscience Karolinska Institutet Solna Sweden Center for Social Sustainability CSS Karolinska Institutet Solna Sweden Amelie Clinic and Karolinska Institutet Solna Sweden mE-Center Bragée Clinics Stockholm Sweden H&auml lsosj&auml len M&ouml lndal G&ouml teborg Sweden Stress Research Institute Stockholm University Stockholm Sweden Karolinska Institutet Solna Sweden Sophiahemmet Barnsjukhuset Martina Sweden Analytical Chemistry and Neurochemistry Department of Chemistry—BMC Uppsala University Uppsala Sweden The mE/CFS Collaborative Research Centre at Uppsala University Uppsala Sweden

This case study presents different strategies that were explored by the patient’s mother (who is a researcher in music and medicine) when her 17-year-old daughter was diagnosed with mE (myalgic Encephalomyelitis), also known as Chronic Fatigue Syndrome (CFS). mE is not widely recognized in the Global as well as the Swedish population at large, and within healthcare, there are no standardized recommended treatments, partly due to the lack of published evidence-based studies. This case study aims to provide insights into how the Swedish healthcare system works, how different clinics and hospitals within it operate and interconnect;and how these contribute to health outcomes after 15 months of treatment.

关键词： Case Study myalgic Encephalomyelitis Parent Perspective Swedish Health Care

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