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Rice science 2024年第3期31卷 237-240,I0002-I0007页

作者： WANG Haoyu LI Su YANG Jibo HUANG Jing ZHU Xiaofang SHEN Renfang zeng dali College of Advanced Agricultural Sciences Zhejiang A&F UniversityHangzhou 311300China State Key Laboratory of Soil and Sustainable Agriculture Institute of Soil ScienceChinese Academy of ScienceNanjing 210008China University of Chinese Academy of Sciences Beijing 100049China

Although putrescine(PUT)has been linked to plants'responses to cadmium(Cd)stress,the exact mechanism is still *** the current investigation,the endogenous PUT concentration in rice roots was enhanced by Cd *** PUT increased root cell wall hemicellulose levels,which in turn increased its Cd binding capacity,concurrently decreasing the transcription level of genes such as OsNRAMP1 and OsCd1 that are responsible for root Cd *** a result。

关键词： absorption roots cadmium

Carotenoid isomerase regulates rice tillering and grain productivity by its biosynthesis pathway

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Journal of Integrative Plant Biology 2024年第2期66卷 172-175页

作者： Chaoqing Ding Zhengji Shao Yuping Yan Guangheng Zhang dali zeng Li Zhu Jiang Hu Zhenyu Gao Guojun Dong Qian Qian Deyong Ren State Key Laboratory of Rice Biology and Breeding ChinaNational Rice Research InstituteHangzhou 310006China

Tillers are unique inflorescence-like branches in grasses,and their number determines the panicle number,plant architecture,and yield(Shang et al.,2021).Tiller formation mainly undergoes axillary meristem(AM)initiation and tiller bud outgrowth(Wang et al.,2018;Yan et al.,2023).The rice(Oryza sativa)KNOX gene OSH1 is expressed in AMs,and an osh1 mutant produces fewer tillers(Tanaka et al.,2015).

关键词： sativa Oryza panicle

Genetic and environmental control of rice tillering

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作物学报:英文版 2023年第5期11卷 1287-1302页

作者： Yuping Yan Chaoqing Ding Guangheng Zhang Jiang Hu Li Zhu dali zeng Qian Qian Deyong Ren State Key Laboratory of Rice Biology and Breeding China National Rice Research InstituteHangzhou 310006ZhejiangChina

Increasing tiller number is a target of high-yield rice breeding. Identification of tiller-defect mutants and their corresponding genes is helpful for clarifying the molecular mechanism of rice tillering. Summarizing research progress on the two processes of rice tiller formation, namely the formation and growth of axillary meristem, this paper reviews the effects of genetic factors, endogenous hormones, and exogenous environment on rice tillering, finding that multiple molecular mechanisms and signal pathways regulating rice tillering cooperate rice tillering, and discusses future research objectives and application of its regulatory mechanism. Elucidation of theis mechanism will be helpful for breeding high-yielding rice cultivars with ideal plant type via molecular design breeding.

关键词： Rice tiller Axillary meristem Tiller bud Genetic and external factors Regulatory mechanism

LSL1 controls cell death and grain production by stabilizing chloroplast in rice

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Science China(Life Sciences) 2022年第11期65卷 2148-2161页

作者： Deyong Ren Wei Xie Qiankun Xu Jiang Hu Li Zhu Guangheng Zhang dali zeng Qian Qian State Key Lab of Rice Biology China National Rice Research InstituteHangzhou 310006China College of Modern Agriculure Zhejiang A&F UniversityHangzhou 31006China National Nanfan Research Institute Chinese Academy of Agricultural SciencesSanya 572024China

Lesion mutants can be valuable tools to reveal the interactions between genetic factors and environmental signals and to improve grain *** we identified a rice(Oryza sativa)mutant,lesion spotleaf1(lsl1),which produces necrotic leaf lesions throughout its life ***1 encodes a protein of unknown function and belongs to a grass-specific *** lesion phenotype of the lsl1 mutant was sharply induced by shading,and its detached leaves incubated in 6-benzylamino purine similarly formed lesions in the *** addition,the lsl1 mutant exhibited reactive oxygen species accumulation and cell *** terminal deoxynucleotidyl transferase d UTP nick end-labeling(TUNEL)and comet assays revealed that the lsl1 mutant contained severe DNA damage,resulting in reduced grain yield and *** sequencing,gene expression,and protein activity analyses indicate that LSL1 is required for chloroplast ***,LSL1 interacts with Psa D and PAP10 to form a regulatory module that functions in chlorophyll synthesis and chloroplast development to maintain redox *** results reveal that LSL1 maintains chloroplast structure,redox homeostasis,and DNA stability,and plays important roles in the interaction between genetic factors and environmental signals and in regulating grain size and quality.

关键词： lesion formation chloroplast function redox homeostasis grain size and quality LSL1 rice

Brittle culm 25, which encodes an UDP-xylose synthase, affects cell wall properties in rice

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The Crop Journal 2023年第3期11卷 733-743页

作者： Siliang Xu Mengchen Zhang Junhua Ye Dongxiu Hu Yuanyuan Zhang Zhen Li Junrong Liu Yanfei Sun Shan Wang Xiaoping Yuan Yue Feng Qun Xu Xinghua Wei dali zeng Yaolong Yang China National Center for Rice Improvement/State Key Laboratory of Rice Biology China National Rice Research InstituteHangzhou 310006ZhejiangChina The Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province Zhejiang A&F UniversityHangzhou 311300ZhejiangChina

Because plant mechanical strength influences plant growth and development,the regulatory mechanisms underlying cell-wall synthesis deserve *** mutants are useful for such *** have identified a novel brittle culm 25(bc25)mutant with reduced growth and partial ***25 encodes an UDP-glucuronic acid decarboxylase involved in cellulose synthesis and belongs to the UXS family.A single-nucleotide mutation in BC25 accounts for its altered cell morphology and cellwall *** electron microscopy analysis showed that the thickness of the secondary cell wall was reduced in *** analysis revealed significant increases in content of rhamnose and arabinose but not of other monosaccharides,indicating that BC25 was involved in xylose synthesis with some level of functional *** assays suggested that BC25 functions with high activity to interconvert UDP-glucuronic acid(UDP-Glc A)and *** staining showed that BC25 was ubiquitously expressed with higher expression in culm,root and sheath,in agreement with that shown by quantitative real-time(q RT)-***-seq further suggested that BC25 is involved in sugar *** conclude that BC25 strongly influences rice cell wall formation.

关键词： Brittle culm Mechanical strength UDP-xylose Cell wall Rice

Genetic analysis of leaffolder resistance in rice

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Journal of Genetics and Genomics 2010年第5期37卷 325-331页

作者： Yuchun Rao Guojun Dong dali zeng Jiang Hu Longjun zeng Zhengyu Gao Guanghen Zhang Longbiao Guo Qian Qian State Key Laboratory of Rice Biology China National Rice Research Institute Hangzhou 310006 China Graduate School of Chinese Academy of Agriculture Science Beijing 100081 China

A double haploid （DH） population, which consists of 120 lines derived from anther culture of a typical indica and japonica hybrid ‘CJ06＇/‘TNI＇, was used to investigate the genetic basis for rice leaffolder resistance. Using a constructed molecular linkage map, five QTLs for rolled leaves were detected on chromosomes 1, 2, 3, 4, and 8. The positive alleles from C J06 on chromosomes 3, 4, and 8 increased the resistance to rice leaffolder, and the alleles from TN1 on chromosomes 1 and 2 also enhanced resistance to leaffolder. The interactions between QTLs were identified and tested, and four conditional interactions were acquired for resistance to rice leaffolder. These loci were located on chromosomes 2, 9, 10, and 11, respectively. QTL pyramiding indicated that the positive alleles affect resistance to leaffolder. The prospective application of this data in rice breeding was also discussed.

关键词： rice (Oryza sativa L.) rice leaffolder QTL analysis conditional interaction

Quantitative Trait Loci Mapping of Flag-leaf Ligule Length in Rice and Alignment with ZmLG1 Gene

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Journal of Integrative Plant Biology 2009年第4期51卷 360-366页

作者： dali zeng Jiang Hu Guojun Dong Jian Liu Longjun zeng Guangheng Zhang Longbiao Guo Yihua Zhou Qian Qian State Key Laboratory of Rice Biology China National Rice Research Institute Hangzhou 310006 China Institute of Genetics and Developmental Biology the Chinese Academy of Sciences Beijing 100101 China

A doubled haploid （DH） population, which consists of 120 lines derived from anther culture of a typical indica and japonica hybrid‘CJ06＇/‘TNI＇, was used in this study. Ligule lengths of flag leaf were investigated for quantitative trait loci （QTL） mapping using the DH population. Five QTLs （qLL-2, qLL.4, qLL-6, qLL-IO and qLL-12） controlling the ligule length （LL） were detected on chromosomes 2, 4, 6, 10 and 12, with the variances explained 11.4%, 13.6%, 27.8%, 22.1% and 11.0%, respectively. Using four known genes of ZmGL1, ZmGL2, ZmGL3 and ZmGL4 in maize from the MaizeGDB, their homologs in rice were aligned and integrated into the existing simple sequence repeats linkage map by in silico mapping. A ZmLG1 homolog gene, OsLG1 encoding a squamosa promoter binding protein, was located between the markers RM255 and RM280, which is just identical to the interval of qLL.4 on the long arm of chromosome 4. The results are beneficial to dissection of the ligule molecular mechanism and the study of cereal evolution.

关键词： double haploid population in silico mapping ligule length of flag leaf quantitative trait loci rice.

Genome-wide association study and transcriptome analysis reveal new QTL and candidate genes for nitrogen-deficiency tolerance in rice

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The Crop Journal 2022年第4期10卷 942-951页

作者： Qing Li Xueli Lu Changjian Wang Lan Shen Liping Dai Jinli He Long Yang Peiyuan Li Yifeng Hong Qiang Zhang Guojun Dong Jiang Hu Guangheng Zhang Deyong Ren Zhenyu Gao Longbiao Guo Qian Qian Li Zhu dali zeng State Key Laboratory of Rice Biology China National Rice Research InstituteChinese Academy of Agricultural SciencesHangzhou 311401ZhejiangChina

The development of rice cultivars with improved nitrogen use efficiency(NUE)is desirable for sustainable *** this goal depends in part on understanding how rice responds to low soil nitrogen(N)and identifying causative genes underlying this *** identify quantitative trait loci(QTL)or genes associated with low N response,we conducted a genome-wide association study(GWAS)using a diverse panel of 230 rice accessions and performed a transcriptomic investigation of rice accessions with differential responses to low N stress at two N *** detected 411 GWAS-associated genes in 5 QTL and 2722 differentially expressed genes in response to low N,of which 24 were identified by both methods and ranked according to gene annotations,literature queries,gene expression,and genetic diversity *** large-scale datasets obtained from this study reveal low N-responsive characteristics and provide insights towards understanding the regulatory mechanisms of N-deficiency tolerance in rice,and the candidate genes or QTL would be valuable resources for increasing rice NUE via molecular biotechnology.

关键词： Nitrogen NUE Rice GWAS RNA-seq

QTL analysis of the rice seedling cold tolerance in a double haploid population derived from anther culture of a hybrid between indica and japonica rice

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Chinese Science Bulletin 2000年第5期45卷 448-453页

作者： QIAN Qian zeng dali HE Ping ZHENG Xianwu CHEN Ying ZHU Lihuang Institute of Genetics Chinese Academy of SciencesBeijing 100101China China National Rice Research Institute Hangzhou 310006China

A doubled haploid population, derived from anther culture of F hybrid between a typical indica cv. and a japonica cv. has been used to investigate the seedling cold tolerance (SCT) in growth cabinet. By dynamically analyzing every day’s survival percentages of the parents and DH lines under 7-d cold plus 9-d normal temperature condition, the guantitative trait loci (QTLs) for SCT have been mapped based on a molecular linkage map constructed from this population. The results show that two parents had significant differences in SCT and the segregation of SCT in DH lines was basically a continuous distribution with most serious injury on the 6th d of the cold treatment. A total of 4 QTLs for SCT have been identified on chromosomes 1, 2, 3 and 4 respectively. The additive effects of qSCT-1, qSCT-2 and qSCT-3 have been contributed by the japonica ev JX17, but that of qSCT-4 has been contributed by the indica cv ZYQ8. The mechanism of SCT seems complicated since the above 4 QTLs detected at different stages

关键词： Indica and japonica subspecies DH population seedling cold tolerance QTL detection.

QTL analysis of rice low temperature germinability

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Chinese Science Bulletin 2001年第21期46卷 1800-1804页

作者： TENG Sheng zeng dali QIAN Qian Kunihifo Yasufumi HUANG Danian Zhu Lihuang China National Rice Research Institute Key Lab for Rice BiologyMinistry of AgricultureHangzhou 310006China College of Life Science Zhejiang UniversityHangzhou 310029China Japan International Research Center for Agriculture Science Tsukuba 305-8686Japan Institute of Genetics China Academy of SciencesBeijing 100101China

A double haploid population, derived from anther culture of F, hybrid between a typical indica and a japonica (ZYQ8/JX17), has been used to investigate the low temperature germinability (LTG) at 15℃. The low temperature germinability of two parents was significantly different. In 6-11 d, the germination percentage of ZYQ8 was higher than that of JX17. In 12-16 d, the germination percentage of JX17 was higher than that of ZYQ8. The quantitative trait loci (QTLs) of every day for low temperature germinabilityhave been mapped based on a molecular linkage map constructed from this population. In 8-11 d, qLTG-9 was identified in C397B-RZ617B on chromosome 9, the additive effect was positive, showing that, the allele from JX17 could increase low temperature germinability. In 12-16 d, qLTG-4 was mapped between RG908 and CT563 on chromosome 4, the additive effect was negative, showing that the allele from ZYQ8 could increase low temperature germinability. These two QTLs were detected at different stages,

关键词： Indica and japonica subspecies DH population low temperature germinability QTL detection dynamical analysis.