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Memory Efficient Two-Pass 3D FFT Algorithm for Intel~ Xeon Phi^(TM) Coprocessor

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Journal of Computer Science & Technology 2014年第6期29卷 989-1002页

作者：刘益群李焱张云泉张先轶 Institute of Software Chinese Academy of Sciences University of Chinese Academy of Sciences Department of Computer Science and Technology Tsinghua University CCF ACM IEEE State Key Laboratory of Computer Architecture Institute of Computing TechnologyChinese Academy of Sciences

Equipped with 512-bit wide SIMD inst d large numbers of computing cores, the emerging x86-based Intel（R） Many Integrated Core （MIC） Architecture ot only high floating-point performance, but also substantial off-chip memory bandwidth. The 3D FFT （three-di fast Fourier transform） is a widely-studied algorithm; however, the conventional algorithm needs to traverse the three times. In each pass, it computes multiple 1D FFTs along one of three dimensions, giving rise to plenty of rided memory accesses. In this paper, we propose a two-pass 3D FFT algorithm, which mainly aims to reduce of explicit data transfer between the memory and the on-chip cache. The main idea is to split one dimension into ensions, and then combine the transform along each sub-dimension with one of the rest dimensions respectively erence in amount of TLB misses resulting from decomposition along different dimensions is analyzed in detail. el parallelism is leveraged on the many-core system for a high degree of parallelism and better data reuse of loc On top of this, a number of optimization techniques, such as memory padding, loop transformation and vectoriz employed in our implementation to further enhance the performance. We evaluate the algorithm on the Intel（R） PhiTM coprocessor 7110P, and achieve a maximum performance of 136 Gflops with 240 threads in offload mode, which ts the vendor-specific Intel（R）MKL library by a factor of up to 2.22X.

关键词： 3D-FFT memory efficie many-core Many Integrated Core Intel(R) Xeon PhiTM

Selection of dialysis methods for end-stage kidney disease patients with diabetes

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World Journal of Diabetes 2024年第9期15卷 1862-1873页

作者： Yao-Hua Hu Ya-Li Liu Ling-Fei Meng yi-xian zhang Wen-Peng Cui Department of Nephrology The Second Hospital of Jilin UniversityChangchun 130041Jilin ProvinceChina

The increasing prevalence of diabetes has led to a growing population of endstage kidney disease(ESKD)patients with ***,kidney transplantation is the best treatment option for ESKD patients;however,it is limited by the lack of ***,dialysis has become the standard treatment for ESKD ***,the optimal dialysis method for diabetic ESKD patients remains *** patients with diabetes often present with complex conditions and numerous ***,these patients face a high risk of infection and technical failure,are more susceptible to malnutrition,have difficulty establishing vascular access,and experience more frequent blood sugar fluctuations than the general ***,this article reviews nine critical aspects:Survival rate,glucose metabolism disorder,infectious complications,cardiovascular events,residual renal function,quality of life,economic benefits,malnutrition,and volume *** study aims to assist clinicians in selecting individualized treatment methods by comparing the advantages and disadvantages of hemodialysis and peritoneal dialysis,thereby improving patients’quality of life and survival rates.

关键词： Diabetes End-stage kidney disease Hemodialysis Peritoneal dialysis Dialysis methods selection

An Arabidopsis mutant atcsr-2 exhibits high cadmium stress sensitivity involved in the restriction of H_2S emission

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Journal of Zhejiang University-Science B(Biomedicine & Biotechnology) 2012年第12期13卷 1006-1014页

作者： Ya-wei LI Ze-hua GONG Yao MU yi-xian zhang Zeng-jie QIAO Li-ping zhang Zhu-ping JIN Hua LI Yan-xi PEI School of Life Science Shanxi UniversityTaiyuan 030006China School of Chemical Engineering and Environment North University of ChinaTaiyuan 030051China School of Environmental Science and Resources Shanxi UniversityTaiyuan 030006China

The gene AtCSR encodes peptidyl-prolyl cis/trans isomerases (PPIases) that accelerate energetically unfavorable cis/trans isomerization of the peptide bond preceding proline *** our studies,we found that AtCSR was associated with cadmium (Cd)-sensitive response in *** results show that AtCSR expression was triggered by Cd-stress in wild type *** expression of some genes responsible for Cd2+ transportation into vacuoles was induced,and the expression of the iron-regulated transporter 1 (IRT1) related to Cd2+ absorption from the environment was not induced in wild type with Cd2+ *** expression of Cd-transportation related genes was not in response to Cd-stress,whereas IRT expression increased dramatically in atcsr-2 with Cd2+ *** expression of glutathione 1 (GSH1) was consistent with GSH being much lower in atcsr-2 in comparison with the wild type with Cd2+ ***,malondialdehyde (MDA),hydrogen peroxide,and Cd2+ contents,and activities of some antioxidative enzymes,differed between the wild type and *** sulfide (H2S) has been confirmed as the third gas-transmitter over recent *** findings revealed that the expression pattern of H2 S-releasing related genes and that of Cd-induced chelation and transportation genes matched well in the wild type and atcsr-2,and H2S could regulate the expression of the Cd-induced genes and alleviate Cd-triggered ***,one possible suggestion was given:down-regulation of atcsr-2,depending on H2S gas-transmitter not only weakened Cd2+ chelation,but also reduced Cd2+ transportation into vacuoles,as well as enhancing the Cd2+ assimilation,thus rendering atcsr-2 mutant sensitive to Cd-stress.

关键词： AtCSR H2S gas-transmitter Glutathione Cadmium stress sensitivity

Treadmill exercise exerts a synergistic effect with bone marrow mesenchymal stem cell-derived exosomes on neuronal apoptosis and synaptic-axonal remodeling

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Neural Regeneration Research 2023年第6期18卷 1293-1299页

作者： Xin-Hong Jiang Hang-Feng Li Man-Li Chen yi-xian zhang Hong-Bin Chen Rong-Hua Chen ying-Chun Xiao Nan Liu Department of Rehabilitation Fujian Medical University Union HospitalFuzhouFujian ProvinceChina Fujian Institute of Cerebrovascular Disease FuzhouFujian ProvinceChina Key Laboratory of Brain Aging and Neurodegenerative Diseases Fujian Key Laboratory of Molecular NeurologyFujian Medical UniversityFuzhouFujian ProvinceChina Department of Neurology Longyan First Hospital of Fujian Medical UniversityLongyanFujian ProvinceChina Department of Neurology Fujian Medical University Union HospitalFuzhouFujian ProvinceChina

Treadmill exercise and mesenchymal stem cell transplantation are both practical and effective methods for the treatment of cerebral ***,whether there is a synergistic effect between the two remains *** this study,we established rat models of ischemia/reperfusion injury by occlusion of the middle cerebral artery for 2 hours and reperfusion for 24 *** models were perfused with bone marrow mesenchymal stem cell-derived exosomes(MSC-exos)via the tail vein and underwent 14 successive days of treadmill *** assessment,histopathology,and immunohistochemistry results revealed decreased neuronal apoptosis and cerebral infarct volume,evident synaptic formation and axonal regeneration,and remarkably recovered neurological function in rats subjected to treadmill exercise and MSC-exos *** effects were superior to those in rats subjected to treadmill exercise or MSC-exos treatment ***,further investigation revealed that the activation of JNK1/c-Jun signaling pathways regulated neuronal apoptosis and synaptic-axonal *** findings suggest that treadmill exercise may exhibit a synergistic effect with MSC-exos treatment,which may be related to activation of the JNK1/c-Jun signaling *** study provides novel theoretical evidence for the clinical application of treadmill exercise combined with MSC-exos treatment for ischemic cerebrovascular disease.

关键词： apoptosis axonal regeneration c-Jun exosomes functional remodeling ischemic stroke JNK1 mesenchymal stem cells synaptic formation treadmill exercise

Structure of Protonated Heterodimer of Proline and Phenylalanine:Revealed by Infrared Multiphoton Dissociation Spectroscopy and Theoretical Calculations

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Chinese Journal of Chemical Physics 2020年第5期33卷 590-594,I0029-I0038,I0079页

作者： Juan Ren xian-yi zhang xiang-lei Kong State Key Laboratory of Elemento-organic Chemistry College of ChemistryNankai UniversityTianjin 300071China School of Physics and Electronic Information Anhui Normal UniversityAnhui Normal UniversityWuhu 241000China Collaborative Innovation Center of Chemical Science and Engineering Nankai UniversityTianjin 300071China

The infrared multiphoton dissociation(IRMPD)spectrum of the protonated heterodimer of Pro Phe H+,in the range of 2700-3700 cm^-1,has been obtained with a Fourier-transform ion cyclotron mass spectrometer combined with an IR OPO *** experimental spectrum shows one peak at 3565 cm^-1 corresponding to the free carboxyl O-H stretching vibration,and two broad peaks centered at 2935 and 3195 cm^-*** calculations were performed on the level of M062 X/6-311++G(d,p).Results show that the most stable isomer is characterized by a charge-solvated structure in which the proton is bound to the unit of *** predicted spectrum is in good agreement with the experimental one,although the coexistence of salt-bridged structures cannot be entirely excluded.

关键词： Infrared multiphoton dissociation spectroscopy Mass spectrometry Heterodimer Amino acids

Correlating interleukin-10 promoter gene polymorphisms with human cerebral infarction onset

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Neural Regeneration Research 2015年第11期10卷 1809-1813页

作者： Xin-hong Jiang Ke-xu Lin yi-xian zhang Rong-hua Chen Nan Liu Department of Rehabilitation Union Hospital Fujian Medical University Department of Emergency Union Hospital Fujian Medical University Department of Neurology Union Hospital Fujian Medical University

Evidence suggests that interleukin-10（IL-10） deficiency exacerbates inflammation and worsens the outcome of brain ischemia. In view of the critical role of the single nucleotide polymorphic sites-1082（A/G） and-819（C/T） in the promoter region of the IL-10 gene, we hypothesized that they are associated with cerebral infarction morbidity in the Chinese Han population. We genotyped these allelic gene polymorphisms by amplification refractory mutation system-polymerase chain reaction methods in 181 patients with cerebral infarction（cerebral infarction group） and 115 healthy subjects（control group）. We identified significant differences in genotype distribution and allele frequency of the IL-10-1082 A/G allele between cerebral infarction and control groups（χ2 = 6.643, P = 0.010）. The IL-10-1082 A allele frequency was significantly higher in the cerebral infarction group（92.3%） than in the control group（86.1%）（P = 0.015）. Moreover, cerebral infarction risk of the AA genotype was 2-fold higher than with the AG genotype（OR = 2.031, 95%CI： 1.134-3.637）. In addition, AA genotype together with hypertension was the independent risk factor of cerebral infarction（OR = 2.073, 95%CI： 1.278-3.364）. No statistical difference in genotype distribution or allele frequency of IL-10-819 C/T was found between cerebral infarction and control groups（P 〉 0.05）. These findings suggest that the IL-10-1082 A/G gene polymorphism is involved in cerebral infarction, and increased A allele frequency is closely associated with occurrence of cerebral infarction.

关键词： neural regeneration IL-IO promoter gene polymorphisms ischemic stroke geneticsusceptibility inflammation immune response ischemia/ reperfusion injury neural regeneration

Coagulation indices and fibrinogen degradation products as predictive biomarkers for tumor-node-metastasis staging and metastasis in gastric cancer

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World Journal of Gastrointestinal Oncology 2025年第1期17卷 110-120页

作者： yi-Qing Shen Qiu-Wan Wei yi-Ren Tian Yun-Zhi Ling Min zhang Clinical Laboratory Civil Aviation Shanghai HospitalGubei Branch of Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of MedicineShanghai 200000China Clinical Laboratory Tongji Hospital of Tongji UniversityShanghai 200000China

BACKGROUND Gastric cancer(GC)is a prevalent malignancy with a substantial health burden and high mortality rate,despite advances in prevention,early detection,and *** with the global average,Asia,notably China,reports disproportionately high GC *** disease often progresses asymptoma-tically in the early stages,leading to delayed diagnosis and compromised ***,it is crucial to identify early diagnostic biomarkers and enhance treatment strategies to improve patient outcomes and reduce *** Retrospectively analyzed the clinical data of 148 patients with GC treated at the Civil Aviation Shanghai Hospital between December 2022 and December *** associations of coagulation indices-partial thromboplastin time(APTT),prothrombin time(PT),thrombin time(TT),fibrinogen,fibrinogen degradation products(FDP),fasting blood glucose,and D-dimer(D-D)with TNM stage and distant metastasis were *** Prolongation of APTT,PT,and TT was significantly correlated with the GC TNM ***,abnormal coagulation system activation was closely related to disease *** FDP and D-D were significantly associated with distant metastasis in GC(P<0.05),suggesting that increased fibrinolytic activity contributes to increased metastatic *** Our Results reveal coagulation indices,FDPs as GC biomarkers,reflecting abnormal coagulation/fibrinolysis,aiding disease progression,metastasis prediction,and helping clinicians assess thrombotic risk for early intervention and personalized treatment plans.

关键词： Coagulation indexes Fibrinogen degradation products Gastric cancer Tumor-node-metastasis staging Distant metastasis

Lipid levels and insulin resistance markers in patients with colorectal cancer:Propensity score matching analysis

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World Journal of Gastrointestinal Oncology 2025年第1期17卷 130-142页

作者： Ren-Hao Hu Dong-yi Yan Ke-Hui zhang Di zhang Xi-Mao Cui Xiao-Hua Jiang Shun zhang Department of Gastrointestinal Surgery Shanghai East HospitalSchool of MedicineTongji UniversityShanghai 200120China School of Medicine Tongji UniversityShanghai 200092China Department of Emergency Medicine Shanghai East HospitalSchool of MedicineTongji UniversityShanghai 200120China

BACKGROUND Colorectal cancer(CRC)is a prevalent malignant neoplasm characterized by subtle early *** To investigate the correlation among serum lipid profiles,the triglyceride-glucose(TyG)index,and the atherosclerotic index(AI)in patients with ***,it explored the clinical diagnostic utility of combining serum lipids with cancer antigens in the context of *** A retrospective analysis encompassed 277 patients with CRC and 1034 healthy *** Following propensity score matching,patients with CRC exhibited significantly reduced levels of serum triglyceride(TG),total cholesterol(TC),high-density lipoprotein cholesterol,and low-density lipoprotein cholesterol(LDL-C),as well as a diminished TyG ***,they displayed elevated AI levels compared to their healthy *** in advanced stages exhibited lower serum levels of TG,TC,and LDL-C compared to those in early *** with positive lymph node metastasis demonstrated reduced levels of TG,LDL-C,and the TyG *** operating characteristic analysis revealed that the combination of the TyG index,carcinoembryonic antigen,and carbohydrate antigen 19-9 yielded the highest positive prediction rate for CRC at 75.3%.CONCLUSION Preoperative serum lipid profiles exhibit a robust association with patients with *** concurrent assessment of multiple serum lipids and cancer antigens effectively enhances the diagnostic accuracy for CRC.

关键词： Colorectal cancer Serum lipids Triglyceride-glucose index Atherosclerotic index Diagnostic marker

Magneto‑Dielectric Synergy and Multiscale Hierarchical Structure Design Enable Flexible Multipurpose Microwave Absorption and Infrared Stealth Compatibility

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Nano-Micro Letters 2025年第2期17卷 401-416页

作者： Chen Li Leilei Liang Baoshan zhang yi Yang Guangbin Ji School of Electronic Science and Engineering Nanjing UniversityNanjing 210093People’s Republic of China College of Materials Science and Technology Nanjing University of Aeronautics and AstronauticsNanjing 210016People’s Republic of China

Developing advanced stealth devices to cope with radar-infrared(IR)fusion detection and diverse application scenarios is increasingly demanded,which faces significant challenges due to conflicting microwave and IR cloaking mechanisms and functional integration ***,we propose a multiscale hierarchical structure design,integrating wrinkled MXene IR shielding layer and flexible Fe_(3)O_(4)@C/PDMS microwave absorption *** top wrinkled MXene layer induces the intensive diffuse reflection effect,shielding IR radiation signals while allowing microwave to pass ***,the permeable microwaves are assimilated into the bottom Fe_(3)O_(4)@C/PDMS layer via strong magneto-electric *** theoretical and experimental optimization,the assembled stealth devices realize a near-perfect stealth capability in both X-band(8–12 GHz)and long-wave infrared(8–14μm)wavelength ***,it delivers a radar cross-section reduction of−20 dB m^(2),a large apparent temperature modulation range(ΔT=70℃),and a low average IR emissivity of ***,the optimal device demonstrates exceptional curved surface conformability,self-cleaning capability(contact angle≈129°),and abrasion resistance(recovery time≈5 s).This design strategy promotes the development of multispectral stealth technology and reinforces its applicability and durability in complex and hostile environments.

关键词： Microwave absorption Radar-infrared compatible stealth Wrinkled MXene Magneto-dielectric synergy Multifunction