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A novel method for clustering cellular data to improve classification

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Neural Regeneration Research 2025年第9期20卷 2697-2705页

作者： Diek w.wheeler Giorgio A.Ascoli Center for Neural Informatics Structures&PlasticityKrasnow Institute for Advanced Study Bioengineering Department Volgenau School of Engineering George Mason University FairfaxVAUSA

Many fields,such as neuroscience,are experiencing the vast prolife ration of cellular data,underscoring the need fo r organizing and interpreting large datasets.A popular approach partitions data into manageable subsets via hierarchical clustering,but objective methods to determine the appropriate classification granularity are *** recently introduced a technique to systematically identify when to stop subdividing clusters based on the fundamental principle that cells must differ more between than within *** we present the corresponding protocol to classify cellular datasets by combining datadriven unsupervised hierarchical clustering with statistical *** general-purpose functions are applicable to any cellular dataset that can be organized as two-dimensional matrices of numerical values,including molecula r,physiological,and anatomical *** demonstrate the protocol using cellular data from the Janelia MouseLight project to chara cterize morphological aspects of neurons.

关键词： cellular data clustering dendrogram data classification Levene's one-tailed statistical test unsupervised hierarchical clustering

Genistein:a possible solution for the treatment of Alzheimer’s disease

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Neural Regeneration Research 2025年第10期20卷 2903-2905页

作者： Karolina Pierzynowska Bartosz Karaszewski Grzegorz węgrzyn Department of Molecular Biology University of GdanskGdanskPoland Gdansk Polandand Department of Adult NeurologyFaculty of MedicineMedical University of GdanskGdanskPoland

Neurodegenerative diseases are defined as disorders resulting from the slow and progressive loss of function and eventual death of neural cells that result from the primary pathology of nervous *** can lead to severe nervous system dysfunction,eventually affecting multiple organs and *** hundred neurodegenerative diseases have been described,and owing to their prevalence,severity.

关键词： organs Alzheimer death

Glia-to-neuron reprogramming to the rescue?

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Neural Regeneration Research 2025年第5期20卷 1395-1396页

作者： Jack w.Hickmott Cindi M.Morshead Department of Surgery University of TorontoTorontoONCanada Donnelly Centre for Cellular and Biomolecular Research TorontoONCanada Institute of Biomedical Engineering University of TorontoTorontoONCanada The KITE Research Institute Toronto Rehabilitation InstituteUniversity Health NetworkTorontoONCanada

Over the last two decades,the dogma that cell fate is immutable has been increasingly challenged,with important implications for regenerative *** brea kth rough discovery that induced pluripotent stem cells could be generated from adult mouse fibroblasts is powerful proof that cell fate can be *** exciting extension of the discovery of cell fate impermanence is the direct cellular reprogram ming hypothesis-that terminally differentiated cells can be reprogrammed into other adult cell fates without first passing through a stem cell state.

关键词： programming passing proof

Enhancing subspace clustering based on dynamic prediction

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Frontiers of Computer Science 2019年第4期13卷 802-812页

作者： Ratha pech Dong HAO Hong CHENG Tao ZHOU Complex Lab University of Electronic Science and Technology of China Chengdu 611731 China Big Data Research Center University of Electronic Science and Technology of China Chengdu 611731 China Center for Robotics University of Electronic Science and Technology of China Chengdu 611731 China

In high dimensional data, many dimensions are irrelevant to each other and clusters are usually hidden under noise. As an important extension of the traditional clustering, subspace clustering can be utilized to simultaneously cluster the high dimensional data into several subspaces and associate the low-dimensional subspaces with the corresponding points. In subspace clustering, it is a crucial step to construct an affinity matrix with block-diagonal form, in which the blocks correspond to different clusters. The distance-based methods and the representation-based methods are two major types of approaches for building an informative affinity matrix. In general, it is the difference between the density inside and outside the blocks that determines the efficiency and accuracy of the clustering. In this work, we introduce a well-known approach in statistic physics method, namely link prediction, to enhance subspace clustering by reinforcing the affinity matrix. More importantly, we introduce the idea to combine complex network theory with machine learning. By revealing the hidden links inside each block, we maximize the density of each block along the diagonal, while restrain the remaining non-blocks in the affinity matrix as sparse as possible. Our method has been shown to have a remarkably improved clustering accuracy comparing with the existing methods on well-known datasets.

关键词： subspace clustering link prediction blockdiagonal matrix low-rank representation sparse representation.

Kainate receptors in the CA2 region of the hippocampus

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Neural Regeneration Research 2023年第2期18卷 320-321页

作者： Yuniesky Andrade-talavera Antonio Rodríguez-Moreno Laboratorio de Neurociencia Celulary Plasticidad Departamento de FisiologíaAnatomía y Biología CelularUniversidad Pablo de OlavideSevillaSpain

The hippocampus is involved in important brain functions such as learning and memory,spatial navigation,fear processing,and social behavior(Dudek et al,2016).The most prominent areas of the hippocampus are typically denoted as the dentate gyrus and the three areas of the cornu ammonis(CA1,CA2,and CA3).Discovered by Lorente de Nó(1934),the CA2 region of the hippocampus is a relatively small area interposed between CA3 and CA1 that forms the nexus linking the input of the entorhinal cortex to the output of CA1(Chevaleyre and Siegelbaum,2010).

关键词： CA2 cortex linking

Evolution of laparoscopic gastrectomy for cancer in the East and west

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Chinese Journal of Cancer Research 2022年第6期34卷 579-586页

作者： Eider talavera-Urquijo Bas P.L.wijnhoven Department of Surgery University Hospital of DonostiaDonostia-San Sebastian 20014Spain Department of Surgery Erasmus University Medical Centre RotterdamRotterdam 3000the Netherlands

Laparoscopic gastrectomy has evolved differently in Eastern and western ***,safety and oncological outcomes of laparoscopic gastrectomy were addressed step-by-step by several randomized controlled trials from the *** phase III studies were published from the west that largely did not show a difference between the laparoscopic and open *** this,laparoscopic gastrectomy is seen as the standard for the surgical treatment of early and advanced gastric cancer in many European ***,we review and comment on some important studies on laparoscopic gastrectomy for gastric cancer from Eastern and western countries and also comment on current and future challenges.

关键词： Laparoscopic gastrectomy minimally invasive surgery gastric cancer

Dynamic modeling of a three-dimensional braided composite thin plate considering braiding directions

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Applied Mathematics and Mechanics(English Edition) 2025年第1期46卷 123-138页

作者： Chentong GAO Huiyu SUN Jianping GU w.M.HUANG College of Aerospace Engineering Nanjing University of Aeronautics and Astronautics School of Mechanical and Aerospace Engineering Nanyang Technological University Jiangsu Key Laboratory of Advanced Structural Materials and Application Technology School of Materials Science and EngineeringNanjing Institute of Technology

Currently, there are a limited number of dynamic models available for braided composite plates with large overall motions, despite the incorporation of three-dimensional(3D) braided composites into rotating blade components. In this paper, a dynamic model of 3D 4-directional braided composite thin plates considering braiding directions is established. Based on Kirchhoff's plate assumptions, the displacement variables of the plate are expressed. By incorporating the braiding directions into the constitutive equation of the braided composites, the dynamic model of the plate considering braiding directions is obtained. The effects of the speeds, braiding directions, and braided angles on the responses of the plate with fixed-axis rotation and translational motion, respectively, are investigated. This paper presents a dynamic theory for calculating the deformation of 3D braided composite structures undergoing both translational and rotational motions. It also provides a simulation method for investigating the dynamic behavior of non-isotropic material plates in various applications.

关键词： three-dimensional (3D) braided composite braiding direction composite thin plate large overall motion dynamic model O313.7

Biostratigraphy versus isotope geochronology: Testing the Urals island arc model

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Geoscience Frontiers 2019年第1期10卷 119-125页

作者： Svetlana Tessalina Cristina talavera Michael E.Pritchin Victor Puchkov John de Laeter Centre for Isotope Research Curtin University The Institute for Geoscience Research (TIGeR) Curtin University School of GeoSciences Institute of Geology and Geochemistry Urals Branch of Russian Academy of Sciences Institute of Geology Ufimian Scientific Investigation Centre

Formation of the Urals volcanic-hosted massive sulphide(VHMS) deposits is considered to be related with the intra-oceanic stage of island arc(s) development in the Upper Ordoviciane Middle Devonian based on the biostratigraphic record of ore-hosting sedimentary rocks. However, the direct Re-Os dating of four known VHMS systems in the Urals gives significantly younger Re-Os isochron ages ranging from355 ± 15 Ma up to 366 ± 2 Ma. To address this discrepancy, we performed SHRIMP U-Pb dating on zircons extracted from rhyodacites(Eifelian biostratigraphic age of 393 -388 Ma) from the footwall of the Alexandrinka VHMS deposit which has a Re-Os isochron age of sulphides of 355 ± 15 *** ^(206) Pb/^(238) U mean age of 374 ± 3 Ma(MSwD ? 1.4 and probability ? 0.11) is considered to be the crystallisation age of the host volcanic rock. This age is ca. 15 Ma younger than the Eifelian(393 -388 Ma)biostratigraphic age and overlaps the Frasniane Famennian boundary(372 ± 2 Ma), characterised by the final stages of Magnitogorsk Arc e East European continent collision. Such an inconsistency with geochronological age may be due to a reburial of conodonts during resedimentation as a result of erosion of older rocks in younger sedimentary sequences.

关键词： Urals Volcanic-hosted massive sulphide deposits U-Pb dating Geochronology

Human induced pluripotent stem cell-derived therapies for regeneration after central nervous system injury

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Neural Regeneration Research 2025年第11期20卷 3063-3075页

作者： Stephen Vidman Yee Hang Ethan Ma Nolan Fullenkamp Giles w.Plant Department of Neuroscience Ohio State UniversityColumbusOHUSA

In recent years,the progression of stem cell therapies has shown great promise in advancing the nascent field of regenerative *** the non-regenerative nature of the mature central nervous system,the concept that“blank”cells could be reprogrammed and functionally integrated into host neural networks remained *** work has also demonstrated the ability of such cells to stimulate intrinsic growth programs in post-mitotic cells,such as *** embryonic stem cells demonstrated great potential in treating central nervous system pathologies,ethical and technical concerns *** barriers,along with the clear necessity for this type of treatment,ultimately prompted the advent of induced pluripotent stem *** advantage of pluripotent cells in central nervous system regeneration is multifaceted,permitting differentiation into neural stem cells,neural progenitor cells,glia,and various neuronal *** precise spatiotemporal application of extrinsic growth factors in vitro,in addition to microenvironmental signaling in vivo,influences the efficiency of this directed *** the pluri-or multipotency of these cells is appealing,it also poses the risk of unregulated differentiation and teratoma *** of the neuroectodermal lineage,such as neuronal subpopulations and glia,have been explored with varying degrees of *** the risk of cancer or teratoma formation is greatly reduced,each subpopulation varies in effectiveness and is influenced by a myriad of factors,such as the timing of the transplant,pathology type,and the ratio of accompanying progenitor ***,successful transplantation requires innovative approaches to develop delivery vectors that can mitigate cell death and support ***,host immune responses to allogeneic grafts must be thoroughly characterized and further developed to reduce the need for *** to a clinical setting wi

关键词： axon regeneration central nervous system regeneration induced pluripotent stem cells neurotrauma regenerative medicine spinal cord injury stem cell therapy