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Changes in the gut mycobiome in pediatric patients in relation to the clinical activity of Crohn's disease

World Journal of Gastroenterology 2023年第14期29卷 2172-2187页

作者： Agnieszka Krawczyk Dominika Salamon Kinga Kowalska-Duplaga Barbara Zapała Teofila Książek Marta Drażniuk-Warchoł tomasz gosiewski Department of Microbiology Division of Molecular Medical MicrobiologyJagiellonian University Medical CollegeCracow 31-121Poland Department of Pediatrics Gastroenterology and NutritionJagiellonian University Medical CollegeCracow 30-663Poland Department of Clinical Biochemistry Jagiellonian University Medical CollegeCracow 31-066Poland Department of Medical Genetics Jagiellonian University Medical CollegeCracow 30-663Poland Department of Pediatrics Gastroenterology and NutritionUniversity Children's HospitalCracow 30-663Poland

BACKGROUND Numerous studies have shown that in Crohn’s disease(CD),the gut microbiota is of great importance in the induction and maintenance of inflammation in the gastrointestinal *** recently,studies have focused almost exclusively on bacteria in the ***,more attention has been paid to the role of intestinal *** To study the gut mycobiome analysis of pediatric patients with CD(in different stages of disease activity)compared to healthy *** Fecal samples were collected from patients:With active,newly diagnosed CD(n=50);active but previously diagnosed and treated CD(n=16);non-active CD and who were in clinical remission(n=39)and from healthy volunteers(n=40).Fungal DNA was isolated from the ***,next generation sequencing(MiSeq,Illumina)was *** composition of mycobiota was correlated with clinical and blood *** Candida *** overrepresented in CD patients,while in the control group,the most abundant genus was *** CD patients,the percentage of Malassezia was almost twice that of the control(P<0.05).In active CD patients,we documented a higher abundance of Debaryomyces hansenii(***)compared to the non-active CD and control(P<0.05)***,statistically significant changes in the abundance of Mycosphaerella,Rhodotorula,and Microidium were *** analyses at the species level and linear discriminant analysis showed that in each group it was possible to distinguish a specific species characteristic of a given patient ***,we have documented statistically significant correlations between:*** and patient age(negative);*** and patient age(positive);*** and calprotectin(positive);*** and calprotectin(positive);and *** and pediatric CD activity index(PCDAI)(positive).CONCLUSION Mycobiome changes in CD patients,and the positive correlation of some species with calprotectin or PCDAI,give strong evidence that fungi may be

关键词： Intestinal mycobiome Fungi Crohn’s disease Inflammatory bowel disease Next generation sequencing Molecular microbiology

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Mucosal bacterial microflora and mucus layer thickness in adolescents with inflammatory bowel disease

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World Journal of Gastroenterology 2009年第42期15卷 5287-5294页

作者： Krzysztof Fyderek Magdalena Strus Kinga Kowalska-Duplaga tomasz gosiewski Andrzej Wedrychowicz Urszula Jedynak-Wasowicz Malgorzata Sladek Stanislaw Pieczarkowski Pawel Adamski Piotr Kochan Piotr B Heczko Department of Pediatrics Gastroenterology and NutritionPolish-American Children's HospitalJagiellonian University Medical College265 Wielicka Str.30-663 CracowPoland Chair of Microbiology Jagiellonian University Medical College18 Czysta Str.31-121 CracowPoland Institute of Nature Conservation Polish Academy of Sciences33 Mickiewicza Ave.31-120 CracowPoland

AIM:To assess the mucosa-associated bacterial microflora and mucus layer in adolescents with inflammatory bowel disease(IBD) .METHODS:Sixty-one adolescents(mean age 15 years,SD ± 4.13) were included in the *** biopsies from inflamed and non-inflamed mucosa of IBD patients and from controls with functional abdominal pain were cultured under aerobic and anaerobic *** number of microbes belonging to the same group was calculated per weight of collected *** mucus thickness in frozen samples was measured under a fluorescent ***:The ratios of different bacterial groups in inflamed and non-inflamed mucosa of IBD patients and controls were specific for particular *** *** predominant in the inflamed mucosa of Crohn's disease(CD) patients(80% of all bacteria) ,and Lactobacillus *** predominant in ulcerative colitis patients(90%) .The differences were statistically significant(P = 0.01-0.001) .Lower number of bifidobacteria was observed in the whole IBD group.A relation was also found between clinical and endoscopic severity and decreased numbers of Lactobacillus and,to a lesser extent,of Streptococcus in biopsies from CD *** mucus layer in the inflamed sites was significantly thinner as compared to controls(P = 0.0033) and to non-inflamed areas in IBD patients(P = 0.031) .CONCLUSION:The significantly thinner mucosa of IBD patients showed a predominance of some aerobes specific for particular diseases,their numbers decreased in relation to higher clinical and endoscopic activity of the disease.

关键词： Adolescents Crohn's disease Mucosaassociated bacterial microflora Mucus layer Ulcerative colitis

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Virulence factors of Enterococcus strains isolated from patients with inflammatory bowel disease

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World Journal of Gastroenterology 2013年第23期19卷 3562-3572页

作者： Edyta Golińska Anna Tomusiak tomasz gosiewski Gra yna Wiecek Agnieszka Machul Diana Mikoajczyk Magorzata Bulanda Piotr B Heczko Magdalena Strus Department of Microbiology Jagiellonian University Medical College31-121 Cracow Poland

AIM: To determine the features of Enterococcus that contribute to the development and maintenance of the inflammatory process in patients with inflammatory bowel disease (IBD). METHODS: Multiplex polymerase chain reaction (PCR) was applied to assess the presence of genes that encode virulence factors [surface aggregating protein (asa1), gelatinase (gelE), cytolysin (cylA), extracellular surface protein (esp) and hyaluronidase (hyl)] in the genomic DNA of 28 strains of Enterococcus isolated from the intestinal tissues of children with IBD (n =16) and of children without IBD (controls; n = 12). Additionally, strains with confirmed presence of the gelE gene were tested by PCR for the presence of quorum sensing genes (fsrA, fsrB, fsrC) that control the gelatinase production. Gelatinase activity was tested on agar plates containing 1.6% gelatin. We also analysed the ability of Enterococcus strains to release and decompose hydrogen peroxide (using Analytical Merckoquant peroxide test strips) and tested their ability to adhere to Caco-2 human gut epithelium cells and form biofilms in vitro. RESULTS: A comparison of the genomes of Enterococcus strains isolated from the inflamed mucosa of patients with IBD with those of the control group showed statistically significant differences in the frequency of theasa1 gene and thegelE gene. Furthermore, the cumulative occurrence of different virulence genes in the genome of a single strain ofEnterococcus isolated from the IBD patient group is greater than in a strain from the control group, although no significant difference was found. Statistically significant differences in the decomposition of hydrogen peroxide and adherence to the Caco-2 epithelial cell line between the strains from the patient group and control group were demonstrated. The results also showed that profuse biofilm production was more frequent amongEnterococcus strains isolated from children with IBD than in control strains. CONCLUSION: Enterococcus strains that a

关键词： Enterococcus Virulence factors Inflammatory bowel disease Hydrogen peroxide Biofilm

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