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Genome-resolved metagenomics of Venice Lagoon surface sediment bacteria reveals high biosynthetic potential and metabolic plasticity as successful strategies in an impacted environment

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Marine Life Science & Technology 2024年第1期6卷 126-142页

作者： elisa Banchi Erwan Corre Paola Del Negro Mauro Celussi Francesca Malfatti National Institute of Oceanography and Applied Geophysics OGS TriesteItaly FR2424 Station Biologique de RoscoffPlateforme ABiMS(Analysis and Bioinformatics for Marine Science)Sorbonne Universite CNRS29680 RoscoffFrance Department of Life Sciences University of TriesteTriesteItaly

Bacteria living in sediments play essential roles in marine ecosystems and deeper insights into the ecology and biogeochemistry of these largely unexplored organisms can be obtained from‘omics’***,we characterized metagenome-assembled-genomes(MAGs)from the surface sediment microbes of the Venice Lagoon(northern Adriatic Sea)in distinct sub-basins exposed to various natural and anthropogenic *** were explored for biodiversity,major marine metabolic processes,anthropogenic activity-related functions,adaptations at the microscale,and biosynthetic gene *** from 126 MAGs,a non-redundant dataset of 58 was compiled,the majority of which(35)belonged to(Alpha-and Gamma-)*** the broad microbial metabolic repertoire(including C,N,and S metabolisms)the potential to live without oxygen emerged as one of the most important *** was also found as a successful *** analysis showed that different MAGs encoded the same metabolic patterns(e.g.,C fixation,sulfate oxidation)thus suggesting metabolic *** and toxic compounds resistance genes were coupled,a condition that could promote the spreading of these genetic *** showed a high biosynthetic potential related to antimicrobial and biotechnological classes and to organism defense and interactions as well as adaptive strategies for micronutrient uptake and cellular *** results highlighted that bacteria living in an impacted environment,such as the surface sediments of the Venice Lagoon,may benefit from metabolic plasticity as well as from the synthesis of a wide array of secondary metabolites,promoting ecosystem resilience and stability toward environmental pressures.

关键词： Antibiotic resistance PAHs Biosynthetic gene clusters Microscale Mobilome Resistome

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Cannabidiol preferentially binds TRPV2: a novel mechanism of action

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Neural Regeneration Research 2022年第12期17卷 2693-2694页

作者： elisa Landucci Domenico E.Pellegrini-Giampietro Alessandra Gianoncelli Giovanni Ribaudo Department of Health Sciences Section of Clinical Pharmacology and OncologyUniversity of FlorenceFirenzeItaly Department of Molecular and Translational Medicine University of BresciaBresciaItaly

Plants from the genus Cannabis,and strains of Cannabis sativa in particular,have been used in medicine since ancient *** Cannabis plant contains more than 500 chemical compounds,with two main phytocannabinoids consisting of Δ9-tetrahydrocannabinol(THC),the psychoactive constituent,and cannabidiol(CBD),which does not bear this *** paper aims at providing a perspective on the potential therapeutic effects of CBD based on its preferential interaction with transient potential receptor V2(TRPV2).Many formulations based on Cannabis extract have been licensed for therapeutic use in some Western *** these,the most relevant are Sativex(THC+CBD,used mainly for the treatment of spasticity in multiple sclerosis)and Epidyolex(purified plant-derived CBD,used for some rare childhood epilepsies).

关键词： effect mechanism formulation

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Recurrent evolution of seaweed body plan complexity among photosynthetic eukaryotes

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Molecular Plant 2024年第7期17卷 999-1001页

作者： elisa S.Goldbecker Iker Irisarri Jan de Vries Department of Applied Bioinformatics Institute for Microbiology and GeneticsUniversity of GottingenGoldschmidtstr.137077 GottingenGermany Section Phylogenomics Center for Molecular Biodiversity ResearchLeibniz Institute for the Analysis of Biodiversity Change(LIB)Museum of Nature HamburgMartin-Luther-King-Platz 320146 HamburgGermany Department of Applied Bioinformatics Campus Institute Data Science(CIDAS)University of GottingenGoldschmidtstr.137077 GottingenGermany Department of Applied Bioinformatics Gottingen Center for Molecular Biosciences(GZMB)University of GottingenGoldschmidtstr.137077 GottingenGermany

The evolutionary origin of multicellularity is an age-old question in biological *** studies have delved into the evolutionary processes that led to the evolution of multicellular life forms from unicellular *** beauty and the challenge about this topic are that evolution has brought forth various forms of multicellular life,multiple times independently,scattered across the evolutionary tree of *** to the challenge,multicellular organisms exist in a diversity of forms and complexities,and the mechanisms by which multicellularity emerged are also likely different between animals,algae,or fungi(Niklas and Newman,2020).Recently,Nelson et al.(2024)presented a large-scale comparative genomics study focused on particularly intricate multicellular organisms:macroalgae(seaweeds),which emerged independently in three distinct eukaryotic lineages-green algae(Chlorophyta),red algae(Rhodophyta),and brown algae(Phaeophyceae).

关键词： algae seaweed evolution

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Targeted therapies in cancer:where are we going?

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Cancer Drug Resistance 2018年第2期1卷 82-86页

作者： elisa Giovannetti Jose A.Rodriguez Department Medical Oncology Lab Medical OncologyVU University Medical CenterCancer Center AmsterdamAmsterdam 1081HVThe Netherlands. Cancer Pharmacology Lab AIRC Start Up UnitUniversity of PisaPisa 56100Italy. Department of Genetics Physical Anthropology and Animal PhysiologyUniversity of the Basque CountryBarrio Sarriena s/nLeioa 48940Spain.

SPECIAL ISSUE INTRODUCTION Targeted therapies in cancer aim to specifically block the activity of crucial proteins or signaling pathways necessary for the growth and/or survival of tumor cells.A major breakthrough in targeted cancer therapy was the introduction nearly two decades ago of imatinib,an inhibitor of the BCR-ABL tyrosine kinase for the treatment of chronic myeloid *** the last years,significant advances in our understanding of tumor biology have facilitated the development of many drugs targeting not only kinases,but also other protein families and cellular *** of these agents are currently employed or being implemented for the treatment of different hematologic and solid malignancies,such as lung *** special issue on“Targeted cancer therapy”will include reviews and commentaries updating the clinical use of targeted agents in the treatment of different tumor types,and the mechanisms that underlie the action of drugs directed to different types of *** special issue will also include research articles presenting novel outstanding data on all aspects of targeted cancer *** submissions will undergo rigorous peer review and will be published free of charge upon acceptance.

关键词： drugs Targeted lung

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Evaluation of habitat requirements of small rodents and effectiveness of an ecologically-based management in a hantavirus-endemic natural protected area in Argentina

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Integrative Zoology 2017年第1期12卷 77-94页

作者： María Victoria VADELL Francisco GARCÍA ERIZE Isabel elisa GÓMEZ VILLAFAÑE Department of Ecology Genetics and Evolution.Institute of EcologyGenetics and Evolution(IEGEBA-CONICET).University of Buenos AiresBuenos AiresArgentina Institute of Research and Environmental Engineering(3iA).University of San Martín San MartínBuenos AiresArgentina

Hantavirus pulmonary syndrome is a severe cardio pulmonary disease transmitted to humans by sylvan rodents found in natural and rural *** transmission is closely linked to the ecology of animal reservoirs and abiotic factors such as habitat characteristics,season or climatic *** main goals of this research were:to determine the biotic and abiotic factors affecting richness and abundance of rodent species at different spatial scales,to evaluate different methodologies for studying population of small rodents,and to describe and analyze an ecologically-based rodent management experience in a highly touristic area.A 4-year study of small rodent ecology was conducted between April 2007 and August 2011 in the most relevant habitats of El Palmar National Park,*** involved a wide range of control and prevention measures,including poisoning,culling and habitat modification.A total of 172 individuals of 5 species were captured with a trapping effort of 13860 traps-nights(1.24 individuals/100 traps-nights).Five rodent species were captured,including 2 hantavirus-host species,Oligoryzomys nigripes and Akodon *** nigripes,host of a hantavirus that is pathogenic in humans,was the most abundant species and the only one found in all the studied *** results are inconsistent with the dilution effect *** present study demonstrates that sylvan rodent species,including the hantavirus-host species,have distinct local habitat selection and temporal variation patterns in abundance,which may influence the risk of human exposure to hantavirus and may have practical implications for disease transmission as well as for reservoir management.

关键词： abundance disease prevention habitat use population dynamics zoonosis

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Advances in two-dimensional molybdenum ditelluride(MoTe2):A comprehensive review of properties,preparation methods,and applications

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SusMat 2024年第5期4卷 31-69页

作者： Pratik V.Shinde Muzammil Hussain elisa Moretti Alberto Vomiero Department of Molecular Sciences and Nanosystems Ca’Foscari University of VeniceVeneziaItaly Department of Industrial Engineering University of PadovaPadovaItaly Department of Engineering Sciences and Mathematics Lulea University of TechnologyLuleaSweden

In the past decade,molybdenum ditelluride(MoTe2)has received significant attention from the scientific community due to its structural features and unique properties originate from *** the current review,the properties,various preparation approaches,and versatile applications of MoTe2 are *** review provides a brief update on the state of our fundamental understanding of MoTe2 material and also discusses the issues that need to be *** introduce MoTe2,we briefly summarize its structural,optoelectronic,magnetic,and mechanical properties in the ***,different preparation meth-ods of MoTe2,such as exfoliation,laser treatment,deposition,hydrothermal,microwave,and molecular beam epitaxy,are *** excellent electri-cal conductivity,strong optical activity,tunable bandgap,high sensitivity,and impressive stability make it an ideal contender for different applications,includ-ing energy storage,catalysis,sensors,solar cells,photodetectors,and *** performance of MoTe2 in these applications is systematically introduced along with mechanistic *** the end of the article,the challenges and possible future directions are highlighted to further modify MoTe2 material for the numerous ***,the availability of different phases and layer structures implies a potential for MoTe2 to lead an era of two-dimensional materials that began from the exfoliation of graphene.

关键词： 2D materials MoTe2 (opto)electronic devices phase structure and bandgap tuning

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Characterization of an Area Polluted by Copper and Zinc:the Relation between Soil Texture,Mineralogy and Pollutant Concentration

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Acta Geologica Sinica(English Edition) 2009年第6期83卷 1224-1231页

作者： Caterina RINAUDO Daniela GASTALDI Orfeo ZERBINATI elisa FORNERO Graziella BERTA Department of Environmental and Life Sciences University of Eastern Piedmont

Twenty-four soil samples were collected at three depths from an approximately 2.5 acre contaminated site in southern Piedmont （Italy） and then analyzed. The main soil parameters determined were： pH, Cation Exchange Capacity （CEC）, particle size distribution, total organic carbon （TOC） content and retained metal concentration. The mineral phases were identified by X-Ray Powder Diffraction （XRPD）. All of the samples contained Zn and Cu resulting from industrial contamination during the last century, and those obtained at depths of 20-40 cm consistently showed the highest levels. To determine which size fraction was most active in the retention process, the samples were separated into four fractions （≤2 mm, ≤63 0m, ≤30 0m and ≤2 μm） and the amount of pollutant measured in each. It was found that metal retention was the highest in the clayey fraction, whose clay minerals were identified by XRPD after K＋ and Mg2＋ saturation, glycerol treatment and heating to 550℃. The clayey fraction was also the richest in TOC, and a direct correlation between TOC amount and metal retention was observed.

关键词： soil pollution heavy metals soil texture clay minerals

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The influence of the crystalline nature of nano-metal oxides on their antibacterial and toxicity properties

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Nano Research 2015年第2期8卷 695-707页

作者： liana Perelshtein Anat Lipovsky Nina Perkas Aharon Gedanken elisa Moschini Paride Mantecca Department of Chemistry and Kanbar Laboratory for Nanomaterials Bar-Ilan University Center for Advanced Materials and Nanotechnology Ramat-Gan 52900 Israel Department of Earth and Environmental Sciences Particulate Matter an Health Risk (POLARIS) Research Centre University of Milano Bicocca Milano 20126 Italy

The antibacterial properties of nano-metal oxides （ZnO, CuO） are based on the formation of reactive oxygen species （ROS）. This work reveals that the antibacterial properties of these nano-metal oxides are strongly dependent on their crystalline structure. The antibacterial activity of the nanooxides was tested against four types of bacteria that commonly cause nosocomial infections. The sonochemical method was applied not only for synthesis of nanooxides but also to their coating on textiles. The antibacterial properties of textiles coated with commercial and sonochemically prepared nano-metal oxides were evaluated and compared. The toxicity was evaluated on human lung cells and amphibian embryos, as representative models for inhalation and aquatic toxicology. The sonochemically prepared metal nanooxides are better antimicrobials than commercially available metal oxides with the same particle size range. It was found that the crystallites which have more defects and less organized structure are more toxic. The formation of ROS was studied by electron spin resonance （ESR） measurements for both the sonochemically prepared and commercial samples of ZnO/CuO nanoparticles. A significant increase in the production of radical species was found in the more defective, sonochemically prepared samples, as compared to the commercial ones. Since modulation of the nanoparticle defects influenced their toxicity, the possibility of engineering safer nano-antibacterials is indicated.

关键词： CuO ZnO nanoparticles antibacterial activity reactive oxygen species(ROS) cytotoxicity lung cells

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ERK1 and ERK2 are involved in recruitment and maturation of human mesenchymal stem cells induced to adipogenic differentiation

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Journal of Molecular Cell Biology 2011年第2期3卷 123-131页

作者： elisabetta Donzelli Caterina Lucchini elisa Ballarini Arianna Scuteri Fabrizio Carini Giovanni Tredici Mariarosaria Miloso Department of Neuroscience and Biomedical Technologies University of Milano-BicoccaVia Cadore 48-20052Monza(MB)Italy Reproductive Medicine Nuova Villa Claudia ClinicVia Flaminia Nuova 280RomeItaly

Adipocytes’biology and the mechanisms that control adipogenesis have gained importance because of the need to develop therapeutic strategies to control obesity and the related *** mesenchymal stem cells(hMSCs),undifferentiated stem cells present in the bone marrow that are physiological precursors of adipocytes,were induced to adipogenic *** molecular mechanisms on the basis of the adipogenesis were evaluated,focusing on the MAPKinases ERK1 and ERK2,which are involved in many biological and cellular ***1 and ERK2 phosphorylation was reduced with different timing and intensity for the two isoforms in treated hMSCs in comparison with control cells until day 10 and then at 14–28 days,it reached the level of untreated *** total amount of ERK1 was also decreased up to day 10 and then was induced to the level of untreated cultures,whereas the expression of ERK2 was not changed following adipogenic *** with the specific ERK1/2 inhibitor U0126 during the whole differentiation period hampered hMSCs’adipogenic differentiation,as lipid droplets appeared in very few cells and were reduced in number and *** U0126 was administered only during the initial phase of differentiation,the number of hMSCs recruited to adipogenesis was reduced while,when it was administered later,hMSCs did not acquire a mature adipocytic ***1 and ERK2 are important for hMSC adipogenic differentiation since any alteration to the correct timing of their phosphorylation affects either the recruitment into the differentiation program and the extent of their maturation.

关键词： mesenchymal stem cells ERK adipogenesis MAPK obesity differentiation

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Induced pluripotent stem cells as suitable sensors for fibromyalgia and myalgic encephalomyelitis/chronic fatigue syndrome

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World Journal of Stem Cells 2021年第8期13卷 1134-1150页

作者： María B Monzón-Nomdedeu Karl J Morten elisa Oltra School of Biotechnology Universidad Católica de Valencia San Vicente MártirValencia 46001Spain Nuffield Department of Women's and Reproductive Health The Women CentreUniversity of OxfordOxford OX39DUUnited Kingdom Department of Pathology Universidad Católica de Valencia San Vicente MártirValencia 46001Spain Centro de Investigación Traslacional San Alberto Magno Universidad Católica de Valencia San Vicente MártirValencia 46001Spain

BACKGROUND Fibromyalgia(FM)and myalgic encephalomyelitis/chronic fatigue syndrome(ME/CFS)are devastating metabolic neuroimmune diseases that are difficult to diagnose because of the presence of numerous symptoms and a lack of specific *** patient heterogeneity linked to patient subgroups and variation in disease severity,anomalies are found in the blood and plasma of these patients when compared with healthy control *** seeming specificity of these“plasma factors”,as recently reported by Ron Davis and his group at Stanford University,CA,United States,and observations by our group,have led to the proposal that induced pluripotent stem cells(iPSCs)may be used as metabolic sensors for FM and ME/CFS,a hypothesis that is the basis for this indepth *** To identify metabolic signatures in FM and/or ME/CFS supporting the existence of disease-associated plasma factors to be sensed by *** A PRISMA(Preferred Reported Items for Systematic Reviews and Meta-analysis)-based systematic review of the literature was used to select original studies evaluating the metabolite profiles of FM and ME/CFS body *** MeSH terms“metabolomic”or“metabolites”in combination with FM and ME/CFS disease terms were screened against the PubMed *** original studies applying omics technologies,published in English,were *** data obtained were tabulated according to the disease and type of body fluid *** across studies were searched and P-values reported by the original studies were gathered to document significant differences found in the disease *** Eighteen previous studies show that some metabolites are commonly altered in ME/CFS and FM body *** vitro cell-based assays have the potential to be developed as screening platforms,providing evidence for the existence of factors in patient body fluids capable of altering morphology,differentiation state and/or growth ***,they can be further develo

关键词： Myalgic encephalomyelitis/chronic fatigue syndrome Fibromyalgia Induced pluripotent stem cells Plasma factor Conditioned medium Sensor system

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