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Aquaculture and Fisheries 2024年第3期9卷 455-485页

作者： Urmi Mukherjee sudipta Maitra Molecular and Cellular Endocrinology Laboratory Department of ZoologyVisva-Bharati UniversitySantiniketan731235India

Endocrine-disrupting chemicals(EDCs)may mimic the endogenous neuroendocrine and endocrine messengers and interfere with developmental,reproductive,immune,metabolic and other physiological *** of basal metabolic rate,energy metabolism,food intake and engorgement by endocrine disruptors may lead to loss of metabolic ***-induced loss of metabolic homeostasis and obesity gave rise to the concept of metabolic-disrupting chemicals(MDC)and environmental *** oxidative stress,alterations in the circadian clock,and energy-sensing homeostasis are some of the major pathophysiological conditions implicated in promoting metabolic ***,fish are the most vulnerable candidate due to their direct exposure to metabolic disruptors in aquatic *** limited,studies conducted using piscine models have helped to identify MDCs in the aquatic ***,the molecular mechanisms through which MDCs can negatively influence the metabolism of hormones,epigenetic alteration,gut dysbiosis,and changes in endocrine and metabolic receptor expression and functions have recently gained considerable *** this review,we provide an update on the impact of MDCs on the initiators,cellular mediators,and hormone receptors related to the maintenance of metabolic homeostasis,with particular emphasis on fish models.

关键词： Reactive oxygen species SIRT1/AMPK/PGC PPAR Estrogen receptor Hormone metabolism Metabolic disruption

Trace fossil evidences of an Early Miocene paleoseismic event and depositional regime change from the Kutch(Kachchh) Basin

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Journal of Palaeogeography 2024年第1期13卷 165-180页

作者： Ayush Srivastava sudipta Dasgupta Krishanu Chatterjee Mohuli Das Bombay Ichnos Research Group Department of Earth SciencesIndian Institute of Technology Bombay(lIT Bombay)PowaiMumbaiMaharashtra400076India

Unconsolidated siliciclastic sediments can undergo post-burial deformation, which leads to the formation of distinctive sedimentary structures, known as soft-sediment deformation structures(SSDS). The presence of a series of sand volcanoes confined to a particular lithostratigraphic horizon can represent a paleoseismic activity and, thereby, exemplifies the concept of “seismite”. The Kutch Basin has been a tectonically active region since the initiation of eastern Gondwana rifting followed by a tectonic inversion during the Cenozoic due to the collision of the Indian and Eurasian plates. A stratum-bound series of sand volcanoes belonging to the Khari Nadi Formation(KNF) is exposed along the banks of Khari River. They separate the shallow marine deposits below and non-marine deposits above with their characteristic marine and paleosol trace fossil suites, respectively. Although a seismogenic origin has been much debated for the SSDS,the ichnofabric analysis of the sand-volcano-bearing stratum unequivocally points toward such an origin under a shallow seafloor condition. In addition to the sedimentary regime change from an open shallow-marine setting to a continental depositional environment concomitant with basinal uplift, the behavior of the burrowing crustaceans testifies to a syn-depositional development of a fault network associated with the fluidization, sand volcanism, and the resilience of the trace-producers in surviving those processes until the sedimentary regime change in the overlying strata. Although the ichno-sedimentological evidence apparently differs from the previous works that proposed a continuous base-level rise from the beginning of deposition of the Khari Nadi Formation up to the middle part of the overlying Chhasra Formation, the paleoseismic activity,its ichnologic signature, and the depositional regime change refer to a higher-resolution(i.e., lower-order)sequence-stratigraphic change causing a short-duration regression within a longer-durat

关键词： Sand volcano Seismite Ichnology Khari Nadi Formation Kutch Basin Kachchh Basin

A hierarchical clustering approach for colorectal cancer molecular subtypes identification from gene expression data

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Intelligent Medicine 2024年第1期4卷 43-51页

作者： Shivangi Raghav Aastha Suri Deepika Kumar Aakansha Aakansha Muskan Rathore sudipta.roy Department of Computer Science&Engineering Bharati Vidyapeeth’s College of EngineeringNew DelhiIndia Artificial Intelligence&Data Science Jio InstituteNavi Mumbai410206India

Background Colorectal cancer(CRC)is the second leading cause of cancer fatalities and the third most common human *** molecular subgroups of CRC and treating patients accordingly could result in better therapeutic success compared with treating all CRC patients *** have highlighted the significance of CRC as a major cause of mortality worldwide and the potential benefits of identifying molecular subtypes to tailor treatment strategies and improve patient *** This study proposed an unsupervised learning approach using hierarchical clustering and feature selection to identify molecular subtypes and compares its performance with that of conventional *** proposed model contained gene expression data from CRC patients obtained from Kaggle and used dimension reduction techniques followed by Z-score-based outlier *** hierarchy clustering was used to identify molecular subtypes,with a P-value-based approach for feature *** performance of the model was evaluated using various classifiers including multilayer perceptron(MLP).Results The proposed methodology outperformed conventional methods,with the MLP classifier achieving the highest accuracy of 89%after feature *** model successfully identified molecular subtypes of CRC and differentiated between different subtypes based on their gene expression *** This method could aid in developing tailored therapeutic strategies for CRC patients,although there is a need for further validation and evaluation of its clinical significance.

关键词： Machine learning Colorectal cancer Feature selection Classification Clustering

Atherosclerotic plaque classification in carotid ultrasound images using machine learning and explainable deep learning

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Intelligent Medicine 2024年第2期4卷 83-95页

作者： Soni Singh Pankaj K.Jain Neeraj Sharma Mausumi Pohit sudipta.roy School of Vocational Studies and Applied Sciences Gautam Buddha UniversityGreater NoidaUttar PradeshIndia Artificial Intelligence and Data Science Jio Institute Navi MumbaiMaharashtraIndia School of Biomedical Engineering Indian Institute of TechnologyVaranasiUttar PradeshIndia

Objective The incidence of cardiovascular diseases(CVD)is rising rapidly *** forms of CVD,such as stroke and heart attack,are more common among patients with certain *** development is a major factor underlying cardiovascular events,such as heart attack and stroke,and its early detection may prevent such *** imaging of carotid arteries is a useful method for diagnosis of atherosclerotic plaques;however,an automated method to classify atherosclerotic plaques for evaluation of early-stage CVD is ***,we propose an automated method for classification of high-risk atherosclerotic plaque ultrasound *** Five deep learning(DL)models(VGG16,ResNet-50,GoogLeNet,XceptionNet,and SqueezeNet)were used for automated classification and the results compared with those of a machine learning(ML)-based technique,involving extraction of 23 texture features from ultrasound images and classification using a Support Vector Machine *** enhance model interpretability,output gradient-weighted convolutional activation maps(GradCAMs)were generated and overlayed on original *** A series of indices,including accuracy,sensitivity,specificity,F1-score,Cohen-kappa index,and area under the curve values,were calculated to evaluate model *** output images allowed visualization of the most significant ultrasound image *** GoogLeNet model yielded the highest accuracy(98.20%).Conclusion ML models may be also suitable for applications requiring low computational ***,DL models could be more completely automated than ML models.

关键词： Explainable deep learning Carotid artery Classification VGG 16 ResNet-50 GoogLeNet XceptionNet SqueezeNet

Lower-order transgressive-regressive cycles within a higher-order transgression at the basin margin: an aberrant intercalation of palaeosol and biostromal ichnofabrics from the early Miocene Kutch Basin, India

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Journal of Palaeogeography 2024年第4期13卷 906-923页

作者： Ayush Srivastava sudipta Dasgupta Seema Singh Bombay Ichnos Research Group Department of Earth SciencesIndian Institute of Technology Bombay (IIT Bombay) Department of Geology Panjab University

The Chhasra Formation (CF) of Kutch Basin exemplifies a typical mixed siliciclastic-carbonate system with alternations of biostromal carbonate and fine-grained siliciclastic beds. The CF is subdivided into two members: the lower Claystone (CM) and the upper Siltstone(SM) member. Three CM outcrops (P1-P3) comprising buried palaeosols that formed under a specific environmental set-up involving imperfectly to poorly drained conditions, are exposed along the Berwali River. The biostromal carbonate beds, alternating with the palaeosols, contain invertebrate bioclasts(bivalves, gastropods, echinoids, etc.) and are characterized by a paucispecific firmground Thalassinoides ichnofabric. At section P1, below the contact between the underlying palaeosol and overlying carbonate, Thalassinoides transforms into firmground Gyrolithes inside the palaeosol forming a compound ichnotaxon. The palaeosol intervals of sections P1 and P2 consist of a Vondrichnus-Termitichnus-root trace ichnofabric defining the Termitichnus ichnofacies. At section P3, lenses of fully bioturbated siltstones with a monospecific firmground Thalassinoides ichnofabric can be observed within an overall silty palaeosol horizon, thereby, locally cross-cutting the pedogenic features. The ichnofabrics of section P3 indicate polyphase pedogenesis with three stages:(1) initial stage: pedogenesis in siltstone of undefined depositional affinity which was obscured by pedogenic processes,(2) transient stage: recurring marine incursions and colonization by crustaceans within the lens-shaped palaeotopographic depressions overprinting the palaeosol, and (3) final stage: subaerial exposure and another preserved phase of pedogenesis. The CM shows an apparent low-order T-R(transgressive-regressive) cyclicity within a 3rd-order TST (transgressive systems tract) that is supported by pedogenic intensity, ichnofabrics, and reciprocal sedimentation near the Miocene basin margin, though the cyclicity can be the result of both autoge

关键词： Palaeosol Biostrome Ichnofabrics Chhasra Formation Transgressive–regressive cycles TST Kutch (Kachchh) Basin

Synergistic enhancement of photocatalytic and antimicrobial efficacy of nitrogen and erbium co-doped ZnO nanoparticles

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Journal of Rare Earths 2024年第5期42卷 859-868,I0002页

作者： sudipta Mondal Moniruzzaman Jamal Sikder Ashikuzzaman Ayon Md Jannatul Ferdous Anik Md Muktadir Billah Department of Materials and Metallurgical Engineering Bangladesh University of Engineering and TechnologyDhaka1000Bangladesh School of Materials Engineering Purdue UniversityWest LafayetteIN47907USA Department of Materials Science and Engineering University of CaliforniaBerkeleyCA94720USA Department of Materials Science and Engineering Northwestern UniversityEvanstonI28USA

Using the chemical co-precipitation approach,a series of nitrogen(N) and erbium(Er) co-doped ZnO nanoparticles(NPs) was effectively synthesized to enhance the photocatalytic and antibacterial *** characterization techniques,including X-ray diffraction(XRD),X-ray photoelectron spectro scopy(XPS),scanning electron microscopy(SEM),UV-vis,and photoluminescence(PL) spectroscopy,were carried out to validate the evaluated photocatalytic and antibacterial *** analysis confirms the pure wurtzite ZnO phase without the presence of any secondary *** analysis confirms the succe ssful incorporation of nitrogen and erbium into the ZnO *** optical bandgap of ZnO calculated from UV-vis spectroscopy shows a redshift after Er-N co-doping,with the lowest bandgap of 3.215 eV calculated for Zn_(0.97)Er_(0.03)N_(0.01)O_(0.99) *** images demonstrate the formation of nanorods after N-Er co-doping,followed by gradually increase d rod diameter and length after N-Er ***,the photocatalytic activities of ZnO samples we re measured by their ability to facilitate the photodegradation of Rhodamine B under UV *** with 1 mol% N doping exhibits 88% photodegradation of RhB under UV light within 360 min,and the photodegradation and antibacterial activity are greatly improved with Er *** fact,3 mol% Er-1 mol% N doped ZnO NPs demonstrate the highest photocatalytic activity,with approximately 96% degradation after 360 min,as well as superior antibacterial activity against Staphylococcus aureus(Gram-positive bacteria) and Pseudomonas aeruginosa(Gram-negative bacteria) with the highest zone of inhibition(ZOI) of 16 nm,due to nanorod formation,increased reactive oxygen species(ROS),and decreased electron-hole recombination,as validated by SEM,XPS,and PL spectroscopy.

关键词： Chemical co-precipitation Co-doping Bandgap Photocatalysis Rare earths Antimicrobial

Structural,optical,electrical,and dielectric relaxation properties of rare earth containing sodium bismuth titanate Na_(0.5)Bi_(0.5)TiO_(3) perovskite:Effect of ionic radius

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Journal of Rare Earths 2024年第2期42卷 383-391,I0006页

作者： Rajdip roy Abhigyan Dutta Department of Physics The University of BurdwanBurdwan713104India

The main focus of this work is to study the effect of the ionic radius of different rare earth dopant cations RE^(3+)(RE=La,Sm,Dy,and Ho) on structural and various physical properties of sodium bismuth titanate(Na_(0.5)B_(0.5)TiO_(3),NBT) based perovskite *** X-ray diffraction data indicate the successful formation of the rhombohedral phase(space group R3c) of NBT nano perovskite incorporated with various rare earth ions in *** lattice parameters were found to increase linearly with the ionic radius of the dopant *** ionic radii and atomic mass of rare earth dopants appear to be essential factors in the grain growth of the prepared *** grain growth results in better crystallinity of the sample by reducing the microstrain with the increase of dopant ionic *** emission scanning electron microscopy and energy-dispersive X-ray spectra confirm the prepared compositions' phase purity and *** UV-Vis spectra reveal that La-doped NBT composition exhibits the lowest optical band gap,which unfolds the application of NBT-based perovskite as photoactive *** ac conductivity and complex impedance spectra unveil that the composition with the largest ionic radius,i.e.,La-doped NBT compound,exhibits the highest dc and bulk conductivity with the lowest activation *** frequency-dependent dielectric data follows Havriliak-Negami(HN) formalism and non-Debye type relaxation *** also indicate that La-doped NBT composition exhibits the highest dielectric strength ***,this study first elaborates that the increasing ionic radius of the rare earth dopant cation in the Bi-site of NBT perovskite improves its microstructural,optical,and electrical properties.

关键词： Rare earth doped NBT Microstructural analysis Optical band gap AC Conductivity Dielectric relaxation Rare earths

Mechanism of Cu entry into the brain:many unanswered questions

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Neural Regeneration Research 2024年第11期19卷 2421-2429页

作者： Shubhrajit roy Svetlana Lutsenko Department of Physiology Johns Hopkins University School of MedicineBaltimoreMDUSA

Brain tissue requires high amounts of copper(Cu)for its key physiological processes,such as energy production,neurotransmitter synthesis,maturation of neuropeptides,myelination,synaptic plasticity,and radical *** requirements for Cu in the brain vary depending on specific brain regions,cell types,organism age,and nutritional *** imbalances cause or contribute to several life-threatening neurologic disorders including Menkes disease,Wilson disease,Alzheimer’s disease,Parkinson’s disease,and *** the well-established role of Cu homeostasis in brain development and function,the mechanisms that govern Cu delivery to the brain are not well *** review summarizes available information on Cu transfer through the brain barriers and discusses issues that require further research.

关键词： ATOX1 ATP7A ATP7B blood-brain barrier brain choroid plexus copper SLC31A1

Enhanced in-vitro degradation resistance and cytocompatibility of a thermomechanically processed novel Mg alloy:Insights into the role of microstructural attributes

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Journal of Magnesium and Alloys 2024年第2期12卷 700-725页

作者： Darothi Bairagi Santanu Mandal Mangal roy Manas Paliwal Sumantra Mandal Department of Metallurgical and Materials Engineering Indian Institute of TechnologyKharagpur 721302India

The role of microstructural features on in-vitro degradation and surface film development of a thermomechanically processed Mg-4Zn-0.5Ca-0.8Mn alloy has been investigated employing electrochemical studies,scanning electron microscopy and X-ray photoelectron *** specimen forged at 523 K temperature developed a coarse unimodal microstructure consisting of basal oriented grains,whereas the specimens forged at 623 K and 723 K temperatures exhibited bimodal microstructures containing randomly oriented fine grains and basal oriented coarse *** bimodal microstructures exerted higher resistance to corrosion compared to the unimodal microstructure in presence of a protective surface *** optimum size distribution of fine and coarse grains as well as the prevalence of basal oriented grains led to the lowest anodic current density in the specimen forged at 623 *** morphology of Ca_(2)Mg_(6)Zn_(3)precipitates governed the cathodic kinetics by controlling the anode to cathode surface area *** the specimen forged at 723 K comprised comparatively lower fraction of precipitates than at 623 K,the mesh-like precipitate morphology increased the effective cathodic surface area,leading to enhanced localised corrosion in the former *** microstructural features developed at 623 K forging temperature formed a well-protective surface film with lower Mg(OH)_(2)to MgO ratio,exhibiting distinctly high polarization resistance and superior cytocompatibility in terms of cell-proliferation and cell-differentiation.

关键词： Magnesium alloy Microstructure Corrosion Electrochemical impedance spectroscopy X-ray photoelectron spectroscopy Cytotoxicity

Earliest megafossils of scandent calamoid palms from the Deccan Intertrappean Beds of Central India and their paleobiogeographic implications

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Journal of Palaeogeography 2024年第3期13卷 509-527页

作者： Sanchita Kumar Kaustav roy Robert A.Spicer Mahasin Ali Khan Palaeobotany and Palynology Laboratory Department of BotanySidho-Kanho-Birsha UniversityRanchi RoadPurulia-723104India CAS Key Laboratory of Tropical Forest Ecology Xishuangbanna Tropical Botanical GardenChinese Academy of SciencesMengla 666303Yunnan ProvinceChina School of Environment Earth and Ecosystem SciencesThe Open UniversityMilton KeynesMK76AAUK State Key Laboratory of Tibetan Plateau Earth System Resources and Environment(TPESRE)Institute of Tibetan Plateau ResearchChinese Academy of SciencesBeijing 100101China

Two well-preserved petrified palm stems from the latest Maastrichtian(Late Cretaceous) to earliest Danian(Early Paleocene) sediments of the Deccan Intertrappean Beds of Madhya Pradesh, Central India are described. Their significant anatomical characteristics include a Calamus-type general stem pattern,the presence of well-preserved fibrovascular bundles(fvbs) with two wide metaxylem vessel elements(230 μm-250 μm) and one phloem strand, uniform density of fvbs, lack of continuity between protoxylem and metaxylem vessel elements, and an absence of centrifugal differentiation of sclerenchymatous fibrous *** features reveal a close resemblance to those of extant genera of scandent Calamoideae. The permineralized stems are described as a new species namely, Palmoxylon calamoides Kumar, roy et Khan sp. *** fossils represent the oldest reliable fossil records of this family, supporting their Gondwanan origin, their importance in tracing their migration pathways from India to Europe and other continents after the docking of the Indian subcontinent with Eurasia during the Paleocene, and an “Out-of-India” dispersal hypothesis. Today the subfamily Calamoideae is disjunctly occurred in Africa, Asia, Australia, Europe, and South America, but the poor deep-time fossil record of this subfamily with a small number of Cenozoic fossils makes hypotheses concerning its origin and dispersal difficult to evaluate. The present study has significant implications for the origin and migration of this subfamily and the paleoclimate.

关键词： Scandent Calamoideae Stem anatomy K-Pg Paleobiogeography Paleoclimate Central India