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Comparative eye-tracking evaluation of scatterplots and parallel coordinates

Visual Informatics 2017年第2期1卷 118-131页

作者： Rudolf netzel Jenny Vuong Ulrich Engelke seán o’donoghue Daniel Weiskopf Julian Heinrich Visualization Research Center(VISUS) University of StuttgartStuttgartGermany Commonwealth Scientific and Industrial Research organisation(CSIRo)(Sydney Hobart)Australia University of Tübingen TübingenGermany

We investigate task performance and reading characteristics for scatterplots(Cartesian coordinates)and parallel *** a controlled eye-tracking study,we asked 24 participants to assess the relative distance of points in multidimensional space,depending on the diagram type(parallel coordinates or a horizontal collection of scatterplots),the number of data dimensions(2,4,6,or 8),and the relative distance between points(15%,20%,or 25%).For a given reference point and two target points,we instructed participants to choose the target point that was closer to the reference point in multidimensional *** present a visual scanning model that describes different strategies to solve this retrieval task for both diagram types,and propose corresponding hypotheses that we test using task completion time,accuracy,and gaze positions as dependent *** results show that scatterplots outperform parallel coordinates significantly in 2 dimensions,however,the task was solved more quickly and more accurately with parallel coordinates in 8 *** eye-tracking data further shows significant differences between Cartesian and parallel coordinates,as well as between different numbers of *** parallel coordinates,there is a clear trend toward shorter fixations and longer saccades with increasing number of *** an area-of-interest(AoI)based approach,we identify different reading strategies for each diagram type:For parallel coordinates,the participants’gaze frequently jumped back and forth between pairs of axes,while axes were rarely focused on when viewing Cartesian *** further found that participants’attention is biased:toward the center of the whole plot for parallel coordinates and skewed to the center/left side for Cartesian *** anticipate that these results may support the design of more effective visualizations for multidimensional data.

关键词： Parallel coordinates Scatterplots Cartesian coordinates Eye tracking Controlled laboratory user study

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Versus—A tool for evaluating visualizations and image quality using a 2AFC methodology

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Visual Informatics 2018年第4期2卷 225-234页

作者： Jenny Vuong Sandeep Kaur Julian Heinrich Bosco K.Ho Christopher J.Hammang Benedetta F.Baldi seán I.o’donoghue CSIRo Data61Australia Garvan Institute of Medical Research Australia University of new South Wales Australia University of Tübingen Germany University of Sydney Australia

novel visualization methods and strategies are necessary to cope with the deluge of datasets present in any scientific field to make discoveries and find answers to previously unanswered *** methods and strategies should not only present scientific findings as images in a concise way but also need to be effective and expressive,which often remain ***,we present Versus,a tool to enable easy image quality assessment and image ranking,utilizing a two-alternative forced choice methodology(2AFC)and an efficient ranking algorithm based on a binary *** tool provides a systematic way of setting up evaluation experiments via the web without the necessity to install any additional software or require any programming ***,Versus can easily interface with crowdsourcing platforms,such as Amazon’s Mechanical Turk,or can be used as a stand-alone system to carry out evaluations with *** demonstrate the use of Versus by means of an image evaluation study,aiming to determine if hue,saturation,brightness,and texture are good indicators of uncertainty in three-dimensional protein *** from the power of crowdsourcing,we argue that there is demand and also great potential for this tool to become a standard for simple and fast image evaluations,with the aim to test the effectiveness and expressiveness of scientific visualizations.

关键词： Evaluation Visualization Visual analytics Image comparison Crowdsourcing Evaluation methods 2AFC Image evaluation Tool Visualization evaluation

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Therapeutic potential of exercise-hormone irisin in Alzheimer's disease

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neural Regeneration Research 2025年第6期20卷 1555-1564页

作者： Eunhee Kim Rudolph ETanzi se Hoon Choi Genetics and Aging Research Unit MassGeneral Institute for Neurodegenerative DiseaseDepartment of NeurologyMassachusetts General HospitalHarvard Medical SchoolCharlestownMAUSA McCance Center for Brain Health Massachusetts General HospitalBostonMAUSA

Irisin is a myokine that is generated by cleavage of the membrane protein fibronectin type Ⅲ domain-containing protein 5(FnDC5) in response to physical exercise. Studies reveal that irisin/FnDC5 has neuroprotective functions against Alzheimer's disease, the most common form of dementia in the elderly, by improving cognitive function and reducing amyloid-β and tau pathologies as well as neuroinflammation in cell culture or animal models of Alzheimer's disease. Although current and ongoing studies on irisin/FnDC5 show promising results, further mechanistic studies are required to clarify its potential as a meaningful therapeutic target for alleviating Alzheimer's disease. We recently found that irisin treatment reduces amyloid-β pathology by increasing the activity/levels of amyloid-β-degrading enzyme neprilysin secreted from astrocytes. Herein, we present an overview of irisin/FnDC5's protective roles and mechanisms against Alzheimer's disease.

关键词： Alzheimer's disease exercise fibronectin typeⅢdomain-containing protein 5(FnDC5) irisin

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AnALYSIS MoDEL To SIMULATE THE CRACKED PIPE BURIED In SoIL

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Acta Mechanica Sinica 1998年第2期14卷 147-156页

作者：庄茁 P.E.o’donoghue Department of Engineering Mechanics Tsinghua University Beijing China 100084 Department of Civil Engineering University College Dublin Earlsfort Terrace Dublin 2 Ireland

The finite element method was used to simulate the crack propagation in a pipeline in the presence of soil backfill. Since typical values for soil modulus are known, a spring element can be used to simulate the effects of backfilled soil on crack propagation. This consists of the relationship between the soil property and the stiffness of the spring element, and the effect of backfill depth on the crack propagation in the pipes. By equating crack driving force, G, in the presence of soil, to the dynamic fracture toughness of the pipeline material, a theoretical predictive capability was obtained for the gas transmission and distribution pipelines. numerical calculations had also been carried out for the cracked pipe with backfill and without backfill. (Edited author abstract) 9 Refs.

关键词： fracture mechanics finite element simulation pipeline soil

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Blood biomarkers of Alzheimer’s disease:important considerations for use in clinical practice

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neural Regeneration Research 2025年第1期20卷 205-206页

作者： Sarah Fullam sean o’Dowd Antoinette o’Connor Department of neurology Tallaght University HospitalDublinIreland Academic Unit of neurology Trinity College DublinIreland

Introduction:Fluid and positron emission tomography(PET)biomarkers that enable the detection of the hallmark proteins of Alzheimer’s disease(AD)(amyloid and tau)have revolutionized our approach to the diagnosis of *** evolution of AD diagnostic criteria to include biological characterization(Alzheimer’s Association Working Group,2023)provides an appropriate framework to reduce levels of clinico-pathologic mismatch and improve in-vivo diagnostic *** the therapeutic landscape for neurodegenerative disease evolves,it is increasingly incumbent on clinicians to provide timely,and pathologically precise diagnoses for ***,the expensive and invasive nature of these tests limits their scalability.

关键词： Blood Alzheimer diagnosis

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Dynamic stress concentration in an infinitely long cylindrical cavity due to a point spherical source embedded within a fluid-saturated poroelastic formation of infinite extent

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Applied Mathematics and Mechanics(English Edition) 2025年第1期46卷 139-156页

作者： H.HoSseInI o.BALILASHAKI Department of Mechanical Engineering Faculty of EngineeringGolestan University

The effects of a harmonically exciting monopole source on an infinitely long cylindrical cavity embedded entirely within a fluid-saturated poroelastic formation of infinite extent are examined theoretically. It is assumed that the source is located outside the cavity at a specified distance from the borehole axis. The magnitudes of the hoop and radial stresses beside the pore pressures exerted on the interface and inside the porous medium surrounding the borehole are calculated and discussed. Biot's poroelastic modeling along with three types of boundary conditions for the cylindrical interface including the ideal fluid, empty borehole, and rigid inclusion with a hard boundary is employed for the analysis. Utilizing a proper translational addition theorem for expressing the incident spherical wave in terms of cylindrical wave expansions, the proposed boundary conditions at the interface are satisfied. Stresses are formulated by means of wave potential functions in a three-dimensional(3D) manner. The effects of the frequency and the radial distance between the source and borehole on the induced stresses are examined for the first cylindrical modes over frequency spectra. Two permeability conditions for the interface and three types of soils for the porous formation are considered throughout the analysis. To give an overall outline of the study, a numerical example is presented. The results clearly indicate that the distance is a key parameter and has considerable effects on the induced stress values. In addition, the interface permeability condition and soil characteristics play an important role in determining the dynamic response of the borehole. Finally,the obtained results are compared with the relevant analyses existing in the literature for some limit cases, and good agreement is achieved.

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neuroinflammation revisited through the microglial lens

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neural Regeneration Research 2025年第7期20卷 1989-1990页

作者： Renato Socodato João B.Relvas Institute of Research and Innovation in Health(i3S)and Institute for Molecular and Cell Biology(IBMC) University of PortoPortoPortugal Department of Biomedicine Faculty of Medicine of the University of Porto(FMUP)PortoPortugal

neuroimmunology is emerging as a pivotal field,shedding light on the intricate dialogues between the central nervous system(CnS)and the immune *** exploration is particularly significant in understanding microglia,the CnS’s innate immune cells,beyond the conventional conflation of“neuroinflammation”and“microglial activation.”This conflation has clouded the true complexity of these processes,potentially stalling scientific progress and the development of new *** challenge the long-standing perspectives that have oversimplified these interactions,advocating for a deeper exploration of the dynamic relationship between neuroinflammation and microglial *** dissecting specific molecular pathways,we aim to illuminate their elaborate roles in neuroinflammatory responses,especially in the context of Alzheimer’s disease(AD).Here,neuroinflammation is not merely a passive observer or a direct antagonist but a complex agent in the disease’s *** article calls for a significant paradigm shift towards an integrative,multi-omics approach to *** such a comprehensive framework is crucial for advancing our understanding of neuroinflammatory conditions and paving the way for targeted therapeutic strategies for brain diseases.

关键词： inflammation simplified activation

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Identifying the ground state structures of point defects in solids

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npj Computational Materials 2023年第1期9卷 2095-2105页

作者： Irea Mosquera-Lois seán R.Kavanagh Aron Walsh David o.Scanlon Thomas Young Centre and Department of Chemistry University College London20 Gordon StreetLondon WC1H 0AJUK Thomas Young Centre and Department of Materials Imperial College LondonExhibition RoadLondon SW72AZUK

Point defects are a universal feature of *** identification is addressed by combining experimental measurements with theoretical *** standard modelling approach is,however,prone to missing the ground state atomic configurations associated with energy-lowering reconstructions from the idealised crystallographic *** ground states compromise the accuracy of calculated *** address this issue,we report an approach to navigate the defect configurational landscape using targeted bond distortions and *** of our workflow to eight materials(CdTe,GaAs,Sb_(2)S_(3),Sb_(2)se_(3),Ceo_(2),In_(2)o_(3),Zno,anatase-Tio_(2))reveals symmetry breaking in each host crystal that is not found via conventional local minimisation *** point defect distortions are classified by the associated physico-chemical *** demonstrate the impact of these defect distortions on derived properties,including formation energies,concentrations and charge transition *** work presents a step forward for quantitative modelling of imperfect solids.

关键词： ground distortion solids

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nucleoside modified mRnA-lipid nanoparticles as a new delivery platform for the repair of the injured spinal cord

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neural Regeneration Research 2025年第8期20卷 2311-2312页

作者： Krisztián Pajer Tamás Bellák Antal nógrádi Department of Anatomy Histology and EmbryologyAlbert Szent-Györgyi Medical SchoolUniversity of SzegedSzegedHungary

Spinal cord injury and treatment opportunities:The adult mammalian spinal cord has a very limited capacity for spontaneous regeneration due to various intrinsic molecular and cellular *** the spinal cord neurons have the capacity to regenerate their axons,the expression of growth inhibitory factors,lack or suppression of proper guidance cues,and profound inflammatory responses do not permit successful regeneration(Khyeam et al.,2021).

关键词： injured capacity modified

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Contribution of mechanical forces to structural synaptic plasticity:insights from 3D cellular motility mechanisms

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neural Regeneration Research 2025年第7期20卷 1995-1996页

作者： Rita o.Teodoro Mafalda Ribeiro Ramos Lara Carvalho inoVA4Health NOVA Medical School|Faculdade de Ciências MédicasNMS|FCMUniversidade Nova de LisboaLisboaPortugal

Cells,tissues,and organs are constantly subjected to the action of mechanical forces from the extracellular environment-and the nervous system is no ***-intrinsic properties such as membrane lipid composition,abundance of mechanosensors,and cytoskeletal dynamics make cells more or less likely to sense these *** and extrinsic cues are integrated by cells and this combined information determines the rate and dynamics of membrane protrusion growth or retraction(Yamada and Sixt,2019).Cell protrusions are extensions of the plasma membrane that play crucial roles in diverse contexts such as cell migration and neuronal synapse *** the nervous system,neurons are highly dynamic cells that can change the size and number of their pre-and postsynaptic elements(called synaptic boutons and dendritic spines,respectively),in response to changes in the levels of synaptic activity through a process called *** plasticity is a hallmark of the nervous system and is present throughout our lives,being required for functions like memory formation or the learning of new motor skills(Minegishi et al.,2023;Pillai and Franze,2024).

关键词： plasticity structural mechanisms

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