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Single-molecule DNA sequencing using two-dimensionalTi2C(OH)2 MXene nanopores: A first-principles investigation

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Nano Research 2022年第11期15卷 9843-9849页

作者： Jariyanee Prasongkit Sirichok Jungthawan rodrigo g.Amorim Ralph H.Scheicher Division of Physics Faculty of ScienceNakhon Phanom UniversityNakhon Phanom 48000Thailand School of Physics Institute of ScienceSuranaree University of Technology111 University AveNakhon Ratchasima 30000Thailand Center of Excellence in Advanced Functional Materials Suranaree University of TechnologyNakhon Ratchasima 30000Thailand Thailand Center of Excellence in Physics Ministry of Higher EducationScienceResearch and Innovation328 Si Ayutthaya RoadBangkok 10400Thailand Departamento de Física ICExUniversidade Federal Fluminense-UFFVolta Redonda/RJ 27213-145Brazil Division of Materials Theory Department of Physics and AstronomyUppsala UniversityUppsala SE-75120Sweden

Nanopore-based devices have provided exciting opportunities to develop affordable label-free DNA sequencing *** a decade ago,graphene has been proposed as a two-dimensional(2D)nanopore membrane in order to achieve single-base ***,it was experimentally revealed that clogging of the graphene nanopore can occur due to the hydrophobic nature of graphene,thus hindering the translocation of *** overcome this problem,the exploration of alternative 2D materials has gained considerable interest over the last *** we show that a Ti_(2)C-based MXene nanopore functionalized by hydroxyl groups(–OH)exhibits transverse conductance properties that allow for the distinction between all four naturally occurring DNA *** have used a combination of density functional theory and non-equilibrium green’s function method to sample over multiple orientations of the nucleotides in the nanopore,as generated from molecular dynamics *** conductance variation resulting from sweeping an applied gate voltage demonstrates that the Ti_(2)C-based MXene nanopore possesses high potential to rapidly and reliably sequence *** findings open the door to further theoretical and experimental explorations of MXene nanopores as a promising 2D material for nanopore-based DNA sensing.

关键词： nanopore DNA sequencing MXenes first-principles quantum transport

Transmission of amyloid-βpathology in humans:a perspective on clinical evidence

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Neural Regeneration Research 2024年第2期19卷 390-392页

作者： Celso S.g.Catumbela rodrigo Morales Department of Neurology McGovern Medical SchoolThe University of Texas Health Science Center at HoustonHoustonTXUSA Centro Integrativo de Biologia y Quimica Aplicada(CIBQA) Universidad Bernardo O’HigginsSantiagoChile

Transmission of misfolded amyloid-β(Aβ)aggregates between human subjects:Protein misfolding disorders are a family of diseases characterized by the accumulation of misfolded protein *** proteinaceous structures,also known as amyloids,are key drivers of fatal neurodegenerative disorders such as prion diseases,Alzheimer’s disease(AD),Parkinson’s disease,and others.

关键词： amyloid diseases Aβ

Nanostructured 3-D Collagen/Nanotube Biocomposites for Future Bone Regeneration Scaffolds

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Nano Research 2009年第6期2卷 462-473页

作者： Edelma E.da Silva Heloisa H.M.Della Colleta Andre S.Ferlauto Roberto L.Moreira rodrigo R.Resende Sergio Oliveira gregory T.Kitten rodrigo g.Lacerda Luiz O.Ladeira Universidade Federal de Minas gerais Departamento de FísicaLaboratório de NanomateriaisAv.Antônio Carlos662730123-970Belo HorizonteMGBrazil Universidade Federal de Minas gerais Departamento de MorfologiaAv.Antônio Carlos662730123-970Belo HorizonteMGBrazil

The fi eld of bionanotechnology has been rapidly growing during the last few years and we can now envision a controllable integration between biological and artificial matter,where new biomimetic structures with a wide range of chemical and physical properties will promote the development of a novel generation of medical *** this work we describe a collagen/carbon nanotube composite which has the potential to be used as a scaffold for tissue *** this biocomposite incorporates the advantageous properties of both collagen and carbon nanotubes,it has most of the characteristics that an ideal biomaterial requires in order to be used as an osteoinductive *** biocomposite is bioresorbable and biodegradable and has the desired mechanical rigidity while maintaining a three-dimensional(3-D)nanostructured *** stability and swelling were achieved under fluid environments by varying the amount of carbon nanotubes(CNTs)incorporated into the *** variations can dictate the degree of interaction between fibroblastic cells and the ***-of-concept was shown by performing an in vitro induced mineralization of hydroxylapatite crystals under physiological ***,the ability to attach biofunctional groups to the CNT walls can open a new road for tissue regeneration since the combination of CNTs with specific growth factors or cellular ligands can create an environment capable of signaling and infl uencing specifi c cell *** observations suggest that collagen/carbon nanotube biocomposites will have important uses in a wide range of biotechnological areas.

关键词： Biomaterials carbon nanotubes collagen tissue engineering biocompatibility

Soil resilience assessment using soil profile descriptions and Analytic Hierarchy Process in Mediterranean mountains considering diverse fire occurrences

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Journal of Mountain Science 2024年第8期21卷 2517-2532页

作者： Jesús rodrigo-COMINO Departamento de Análisis geográfico Regional y geografía Física Facultad de Filosofía y LetrasCampus Universitario de CartujaUniversidad de GranadaGranada 18071Spain

Wildfires are complex natural phenomena that exert significant impacts on landscapes,societies,and *** the concept of resilience is crucial in mitigating its possible negative impacts,as it involves preparing for,responding to,and recovering from *** research aims to demonstrate the utility of in situ soil profile description in assessing land use resilience using an Analytic Hierarchy Process(AHP)through an expert panel *** study examines a catchment located in the Balearic Islands,considering two fire occurrences(once and twice),comparing abandoned agricultural terraces and natural *** results demonstrated that the priority ranking of variables to assess soil profile resilience against wildfires,determined by a panel of 10 experts,identified horizon depth(25.1%),slope inclination(21.5%),and hydrological connectivity(16.6%)as the most crucial *** variables,such as number and size of roots,structure of pedal soil material,size class structure,and rock fragments,also contributed to resilience but to a lesser extent,with scores ranging from 5.7%to 9.6%.Analyzing the priorities established by the experts using AHP,the results showed that the least resilient soil horizon was H1 of the control hillslope,especially under high and low connectivity processes,which aligned with the loss of superficial soil horizons after one and two *** showed greater changes in resilience after occurring wildfires compared to terraces,with the most significant alterations occurring after the second wildfire *** study addresses a significant knowledge gap in the field by highlighting the interconnectedness of wildfires,resilience,and land use,providing insights into land management strategies for wildfire-prone regions.

关键词： Soil profiles Soil geography Wildfires AHP Land management Expert panel survey

geostatistical seismic inversion and 3D modelling of metric flow units,porosity and permeability in Brazilian presalt reservoir

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Petroleum Science 2024年第3期21卷 1699-1718页

作者： rodrigo Penna Wagner Moreira Lupinacci Exploratory Interpretation and Reservoir Characterization group(gIECAR) Department of Geology and GeophysicsUniversidade Federal FluminenseNiteroiRJ24210-346Brazil Petrobras Rio de JaneiroRJ20031-912Brazil

Flow units(FU)rock typing is a common technique for characterizing reservoir flow behavior,producing reliable porosity and permeability estimation even in complex geological ***,the lateral extrapolation of FU away from the well into the whole reservoir grid is commonly a difficult task and using the seismic data as constraints is rarely a subject of *** paper proposes a workflow to generate numerous possible 3D volumes of flow units,porosity and permeability below the seismic resolution limit,respecting the available seismic data at larger *** methodology is used in the Mero Field,a Brazilian presalt carbonate reservoir located in the Santos Basin,who presents a complex and heterogenic geological setting with different sedimentological processes and diagenetic *** generated metric flow units using the conventional core analysis and transposed to the well log ***,given a Markov chain Monte Carlo algorithm,the seismic data and the well log statistics,we simulated acoustic impedance,decametric flow units(DFU),metric flow units(MFU),porosity and permeability volumes in the metric *** aim is to estimate a minimum amount of MFU able to calculate realistic scenarios porosity and permeability scenarios,without losing the seismic lateral *** other words,every porosity and permeability volume simulated produces a synthetic seismic that match the real seismic of the area,even in the metric *** achieved 3D results represent a high-resolution fluid flow reservoir modelling considering the lateral control of the seismic during the process and can be directly incorporated in the dynamic characterization workflow.

关键词： Flowunits geostatistical inversion Presalt reservoir 3D reservoir modelling Petrophysical modelling

Applying multi-criteria analysis to select the most appropriate broiler rearing environment

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Information Processing in Agriculture 2021年第2期8卷 205-218页

作者： Karla A.O.Lima Irenilza A.Nääs Daniella J.Moura rodrigo g.garcia Angélica S.Mendes College of Agricultural Engineering The State University of CampinasAve.Cândido Rondon501Barão Geraldo13083-875 CampinasSPBrazil College of Agrarian Sciences The Federal University of Grande DouradosRod Dourados-Itahumkm 1279804-970 DouradosMSBrazil College of Animal Sciences The Technological Federal University of ParanáRod Boa Esperançakm 0485660-000 Dois VizinhosPRBrazil

The present study aimed to assess the most appropriate rearing system for broiler housing in tropical regions using the Analytical Hierarchy Process(AHP).The research was done using data sampling from a field study carried out in eight mechanically-ventilated commercial broiler *** had positive ventilation(open-sided conventional system),and the other four had negative pressure systems,which were named according to the curtains color and light management(blue-house with blue curtains,and dark-house with black side curtains).The data from the field research(rearing dry-bulb temperature and relative humidity;ammonia and carbon dioxide concentrations;energy use;litter type and quality;and broiler performance)were organized,and the multi-criteria analysis AHP was *** the process,the decision-maker must define the problem and chose the criteria to evaluate the alternatives to make a suitable *** alternative selected needs to be according to the stakeholders’*** alternatives consisted of houses using three ventilation systems(conventional,blue-house,and dark-house).The different chosen criteria were the thermal and aerial environment,broiler productivity,energy consumption,and litter *** selected data collected from the field experiment and from current literature to subsidize the selection of the *** computation was done using field data results,knowledge from existing literature,and the expertise of three *** the first time,the AHP technique is applied to select the most suitable broiler housing,considering the complex variables involved in the *** indicated the conventional system as the most appropriate *** of the conventional system showed the highest scores on most criteria in the pairwise *** considered broiler performance,gasses concentration,and electricity cost,providing natural ventilation open-sided conventional house as the most appropriate rearing system

关键词： AHP Energy use Litter Noxious gasses Poultry production Ventilation system

Endoscopic treatment of biliopancreatic pathology in patients with Whipple's pancreaticoduodenectomy surgical variants: Lessons learned from single-balloon enteroscopy-assisted ERCP

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Hepatobiliary & Pancreatic Diseases International 2024年第5期23卷 509-514页

作者： rodrigo garcés-Durán Laurent Monino Pierre H Deprez Hubert Piessevaux Tom g Moreels Department of gastroenterology and Hepatology Universitécatholique de LouvainCliniques Universitaires Saint-LucAvenue Hippocrates 101200 BrusselsBelgium

Background: Endoscopic treatment of biliopancreatic pathology is challenging due to surgically altered anatomy after Whipple's pancreaticoduodenectomy. This study aimed to evaluate the feasibility and safety of single-balloon enteroscopy-assisted endoscopic retrograde cholangiopancreatography(SBE-ERCP) to treat biliopancreatic pathology in patients with Whipple's pancreaticoduodenectomy surgical variants. Methods: We retrospectively analyzed 106 SBE-ERCP procedures in 46 patients with Whipple's variants. Technical and clinical success rates and adverse events were evaluated. Results: Biliary SBE-ERCP was performed in 34 patients and pancreatic SBE-ERCP in 17, including 5 with both indications. From a total of 106 SBE-ERCP procedures, 76 were biliary indication with technical success rate of 68/76(90%) procedures and clinical success rate of 30/34(88%) patients. Mild adverse event rate was 8/76(11%), without serious adverse events. From a total of 106 SBE-ERCP procedures, 30 were pancreatic indication with technical success rate of 24/30(80%) procedures( P = 0.194 vs. biliary SBEERCP) and clinical success rate of 11/17(65%) patients( P = 0.016 vs. biliary SBE-ERCP). Mild adverse event rate was 6/30(20%)( P = 0.194 vs. biliary SBE-ERCP), without serious adverse events. After SBE-ERCP failure, endoscopic ultrasound-guided drainage, percutaneous drainage and redo surgery were alternative therapeutic options. Conclusions: Biliopancreatic pathology after Whipple's pancreaticoduodenectomy variants can be treated using SBE-ERCP without serious adverse events. Technical and clinical success rates are high for biliary indications, whereas clinical success rate of pancreatic indications is significantly lower. SBE-ERCP can be considered as first-line treatment option in this patient group with surgically altered anatomy.

关键词： Enteroscopy Endoscopic retrograde cholangiopancreatography Pancreaticoduodenectomy Surgically altered anatomy Whipple’s procedure

Nonlinear optical characterization of single β-barium-borate nanocrystals using second-harmonic confocal microscopy

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Chinese Optics Letters 2018年第4期16卷 81-85页

作者： rodrigo g.dos Santos Lauro J.Q.Maia Cid B.de Araújo Leonardo de S.Menezes Departamento de Fisica Universidade Federal de PernambucoRecife-PE 50670-901Brazil Instituto de Fisica Universidade Federal de CoiasCoiania-CO 74001-970Brazil

The confocal microscopy technique was applied for nonlinear optical characterization of single β-barium-borate（β-BBO） nanocrystals. The experimental setup allows measurements of the laser polarization-selective secondharmonic（SH） generation, and the results can be used to determine the nanocrystals＇ c-axis orientation, as well as to obtain information about their second-order susceptibility χ^（2）. The dependence of the SH signal on the laser polarization allowed the discrimination of individual particles from aggregates. The data were fitted using a model that takes into account the BBO properties and the experimental setup characteristics considering（i） the electrostatic approximation,（ii） the effects of the microscope objective used to focus the light on the sample in an epi-geometry configuration, and（iii） the symmetry of χ^（2） for the β-BBO nanocrystals. A signal at the third-harmonic frequency was also detected, but it was too weak to be studied in detail.

关键词： SH BBO HR barium-borate nanocrystals using second-harmonic confocal microscopy Nonlinear optical characterization of single

Are we ready to use new endoscopic scores for ulcerative colitis?

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World Journal of gastroenterology 2024年第10期30卷 1466-1469页

作者： rodrigo Quera Paulina Núñez F Universidad de los Andes Inflammatory Bowel Disease ProgramClinica Universidad de los AndesDigestive Disease CenterSantiago 7600976RMChile Digestive Disease Center Inflammatory Bowel Disease ProgramClínica Universidad de los AndesSantiago 7620157Chile Department of gastroenterology Universidad de Chile-Hospital San Juan de DiosSantiago 770123Chile

For ulcerative colitis(UC),the variability in inflammatory activity along the colon poses a challenge in *** focus on achieving endoscopic healing in UC is evident,where the UC Endoscopic Index of Severity and Mayo Endoscopic Subscore are commonly used for ***,these indices primarily consider the most severely affected *** et al recent study validates the Toronto Inflammatory Bowel Disease global Endoscopic Reporting(TIgER)score offering a comprehensive assessment of inflammatory activity across diverse segments of the colon and rectum and a reliable index correlating strongly with UC Endoscopic Index of Severity and moderately with Mayo Endoscopic Subscore(MES).Despite recommendation,certain aspects warrant further *** calprotectin,an intermediate target,correlates with TIgER and should be *** TIgER scores defining endoscopic remission and response,evaluating agreement with histological activity,and assessing inter-endoscopist agreement for TIgER require *** the correlation between TIgER and intestinal ultrasound,akin to MES,adds value.

关键词： Ulcerative colitis Sigmoidoscopy Colonoscopy Score index