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An integrative approach of digital image analysis and transcriptome profiling to explore potential predictive biomarkers for TGFβblockade therapy

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Acta Pharmaceutica Sinica B 2022年第9期12卷 3594-3601页

作者： Robert Pomponio Qi Tang Anthony Mei Anne Caron Bema Coulibaly Joachim Theilhaber Maximilian Rogers-Grazado Michele Sanicola-Nadel Souad Naimi reza olfati-saber Cecile Combeau Jack Pollard Tun Tun Lin Rui Wang Sanofi Translational Medicine Early Development Cambridge MA 02142USA Sanofi Artificial Intelligence and Deep Analytics Data and Data Sciences CambridgeMA 02142USA Sanofi Translational Science Vitry sur Seine 94403France Sanofi Precision Oncology Cambridge MA 02142USA Sanofi Oncology Early Development Cambridge MA 02142USA

Increasing evidence suggests that the presence and spatial localization and distribution pattern of tumor infiltrating lymphocytes(TILs)is associate with response to *** studies have identified TGFβactivity and signaling as a determinant of T cell exclusion in the tumor microenvironment and poor response to PD-1/PD-L1 *** we coupled the artificial intelligence(AI)-powered digital image analysis and gene expression profiling as an integrative approach to quantify distribution of TILs and characterize the associated TGFβpathway *** of T cell spatial distribution in the solid tumor biopsies revealed substantial differences in the distribution *** digital image analysis approach achieves 74%concordance with the pathologist assessment for tumor-immune *** transcriptomic profiling suggests that the TIL score was negatively correlated with TGFβpathway activation,together with elevated TGFβsignaling activity observed in excluded and desert tumor *** present results demonstrate that the automated digital pathology algorithm for quantitative analysis of CD8 immunohistochemistry image can successfully assign the tumor into one of three infiltration phenotypes:immune desert,immune excluded or immune *** association between“cold”tumor-immune phenotypes and TGFβsignature further demonstrates their potential as predictive biomarkers to identify appropriate patients that may benefit from TGFβblockade.

关键词： Digital pathology Artificial intelligence TGFβ Predictive biomarker Tumor topography T cell infiltration Transcriptomic profiling Machine learning

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Nonlinear phenomena in vibrations of embedded carbon nanotubes conveying viscous fluid

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Nanotechnology and Precision Engineering 2024年第1期7卷 44-54页

作者： reza Ebrahimi Mechanical Engineering Faculty of EngineeringYasouj UniversityYasouj 75918-74831Iran

Various nonlinear phenomena such as bifurcations and chaos in the responses of carbon nanotubes(CNTs)are recognized as being major contributors to the inaccuracy and instability of nanoscale mechanical ***,the main purpose of this paper is to predict the nonlinear dynamic behavior of a CNT conveying viscousﬂuid and supported on a nonlinear elastic *** proposed model is based on nonlocal Euler–Bernoulli beam *** Galerkin method and perturbation analysis are used to discretize the partial differential equation of motion and obtain the frequency-response equation,respectively.A detailed parametric study is reported into how the nonlocal parameter,foundation coefﬁcients,ﬂuid viscosity,and amplitude and frequency of the external force inﬂuence the nonlinear dynamics of the ***,quasi-periodic,and chaotic behaviors and hardening nonlinearity are revealed by means of the vibration time histories,frequency-response curves,bifurcation diagrams,phase portraits,power spectra,and Poincaré***,the results show that it is possible to eliminate irregular motion in the whole range of external force amplitude by selecting appropriate parameters.

关键词： Nonlinear vibration Carbon nanotubes Nonlocal effect Viscousﬂuid Nonlinear elastic medium

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Resilence Control of DC Microgrid Integrated with Multi-Nanogrids Considering Connected-Islanded States

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CSEE Journal of Power and Energy Systems 2024年第2期10卷 786-796页

作者： Hossien Faraji reza Hemmati Pierluigi Siano Department of Electrical Engineering Amirkabir University of TechnologyTehranIran Department of Electrical Engineering Kermanshah University of TechnologyKermanshahIran Department of Management&Innovation Systems University of Salernoand also with the Department of Electrical and Electronic Engineering ScienceUniversity of JohannesburgJohannesburg 2006South Africa

In this paper, a DC microgrid (DCMG) integrated with a set of nano-grids (NG) is studied. DCMG exchanges predetermined active and reactive power with the upstream network. DCMG and NGs are coordinately controlled and managed in such a way the exchanged P-Q power with external grid are kept on scheduled level following all events and operating conditions. The proposed control system, in addition to the ability of mutual support between DCMG and NGs, makes NGs support each other in critical situations. On the other hand, in all operating conditions, DCMG not only feeds three-phase loads with time-varying active and reactive power on the grid side but also injects constant active power into the grid. During events, NGs support each other, NGs support DCMG, and DCMG supports NGs. Such control strategies are realized by the proposed control method to increase resilience of the system. For these purposes, all resources and loads in DCMG and NGs are equipped with individual controllers. Then, a central control unit analyzes, monitors, and regularizes performance of individual controllers in DCMG and NGs. Nonlinear simulations show the proposed model can effectively control DCMG and NGs under normal and critical conditions.

关键词： Control system DC microgrid nanogrid resilience

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Interplay between temperature-dependent strengthening mechanisms and mechanical stability in high-performance austenitic stainless steels

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International Journal of Minerals,Metallurgy and Materials 2024年第10期31卷 2182-2188页

作者： Mohammad Javad Sohrabi Hamed Mirzadeh Saeed Sadeghpour Milad Zolfipour Aghdam Abdol reza Geranmayeh reza Mahmudi School of Metallurgy and Materials Engineering College of EngineeringUniversity of Tehran14395-515 TehranIran Centre for Advanced Steels Research Materials and Mechanical EngineeringUniversity of Oulu90014 OuluFinland Department of Mechanical Engineering College of EngineeringUniversity of Tehran14395-515 TehranIran

The effects of deformation temperature on the transformation-induced plasticity(TRIP)-aided 304L,twinning-induced plasti-city(TWIP)-assisted 316L,and highly alloyed stable 904L austenitic stainless steels were compared for the first time to tune the mechan-ical properties,strengthening mechanisms,and strength-ductility *** this purpose,the scanning electron microscopy(SEM),electron backscattered diffraction(EBSD),X-ray diffraction(XRD),tensile testing,work-hardening analysis,and thermodynamics calcu-lations were *** induced plasticity effects led to a high temperature-dependency of work-hardening behavior in the 304L and 316L stainless *** the deformation temperature increased,the metastable 304L stainless steel showed the sequence of TRIP,TWIP,and weakening of the induced plasticity mechanism;while the disappearance of the TWIP effect in the 316L stainless steel was also ***,the solid-solution strengthening in the 904L superaustenitic stainless steel maintained the tensile properties over a wide temper-ature range,surpassing the performance of 304L and 316L stainless *** this regard,the dependency of the total elongation on the de-formation temperature was less pronounced for the 904L alloy due to the absence of additional plasticity *** results re-vealed the importance of solid-solution strengthening and the associated high friction stress for superior mechanical behavior over a wide temperature range.

关键词： austenitic stainless steels mechanical behavior stacking fault energy metastability mechanical twinning

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Temperature-jump tensile tests to induce optimized TRIP/TWIP effect in a metastable austenitic stainless steel

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International Journal of Minerals,Metallurgy and Materials 2024年第9期31卷 2025-2036页

作者： Mohammad Javad Sohrabi Hamed Mirzadeh Saeed Sadeghpour Abdol reza Geranmayeh reza Mahmudi School of Metallurgy and Materials Engineering College of EngineeringUniversity of Tehran14395-515TehranIran Centre for Advanced Steels Research Materials and Mechanical EngineeringUniversity of Oulu90014 OuluFinland

In the present work,plastic deformation mechanisms were initially tailored by adjusting the deformation temperature in the range of 0 to 200℃ in AISI 304L austenitic stainless steel,aiming to optimize the strength-ductility *** was shown that the combined twinning-induced plasticity(TWIP)/transformation-induced plasticity(TRIP)effects and a wider strain range for the TRIP effect up to higher strains by adjusting the deformation temperature are good strategies to improve the strength-ductility synergy of this metastable stainless *** this regard,by consideration of the observed temperature-dependency of plastic deformation,the controlled sequence of TWIP and TRIP effects for archiving superior strength-ductility trade-off was intended by the pre-designed temperature jump tensile ***,the optimum tensile toughness of 846 MJ/m^(3) and total elongation to 133% were obtained by this strategy via exploiting the advantages of the TWIP effect at 100℃ and the TRIP effect at 25℃ at the later stages of the ***,a deformation-temperature-transformation(DTT)diagram was developed for this metastable ***,based on work-hardening analysis,it was found that the main phenomenon constraining further improvement in the ductility and strengthening was the yielding of the deformation-induced α′-martensite.

关键词： metastable stainless steels transformation-induced plasticity twinning-induced plasticity stacking fault energy mechanical properties

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Changes in climatic conditions drive variations in arbuscular mycorrhizal fungi diversity and composition in semi-arid oak forests

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Journal of Forestry Research 2024年第5期35卷 106-119页

作者： Nahid Jafarian Javad Mirzaei reza Omidipour Yahya Kooch Department of Forest Science Faculty of AgricultureIlam UniversityIlam 69315-516Iran Department of Range and Watershed Management Faculty of AgricultureIlam UniversityIlam 69315-516Iran Faculty of Natural Resources and Marine Sciences Tarbiat Modares UniversityNoor 46417-76489MazandaranIran

Arbuscular mycorrhizal fungi(AMF)play a vital role in plant productivity and ecosystem ***,their responses to abiotic factors(i.e.,climate,physiography,and soil properties)are unknown,especially across climatic gradients and slope aspects in arid and semi-arid *** this study,using 60 composite soil samples,direct and indirect effects of climate factors and slope aspects on AMF diversity,composition and spore density were *** findings indicate that climate has a more direct influ-ence on soil properties(P<0.001)in comparison to slope aspect(P=0.449).In contrast,climate significantly affected AMF diversity and composition,with the highest diversity in dryer *** pH had the highest correlation with different facets of AMF *** equation modeling(SEM)indicated that only a small part of the variation in AMF diversity and spore density could be explained by climate characteristics,slope aspect and soil *** on SEM results,climate was the most important determinant of AMF diversity and spore density;slope aspect had a less critical *** outputs suggest that variations in AMF diversity are derived by the direct effects of climate and the indirect effect of soil chemical *** addition,with increasing dryness,sporulation and AMF diversity increased.

关键词： AMF diversity and composition Physiographic factors Semi-arid ecosystems Zagros forest

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Movement Trend Alterations in the Periaqueductal Gray(PAG)-Employed Ratbot Navigation Are Correlated with Stimulation Parameters

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Journal of Bionic Engineering 2024年第2期21卷 866-876页

作者： Sina Khajei Abed Khorasani Mohammad reza Afarinesh Vahid Sheibani Neuroscience Research Center Institute of NeuropharmacologyKerman University of Medical SciencesKerman***Iran Cognitive Neuroscience Research Center Institute of NeuropharmacologyKerman University of Medical SciencesKerman***Iran

In previous studies,Periaqueductal Gray(PAG)stimulation was used to stop ratbots from *** to the homology between the PAG and the intercollicular nucleus,which has been used for forward movement in birds,we investigated the possibility of PAG application to induce forward locomotion for the first *** a corridor maze,the traveled distances via PAG electrical stimulation were examined in nine Wistar male rats during three sessions.A custom-designed stimulator was developed to apply the *** results showed reductions in responses to stimulation over ***,the traveled distances had negative slopes during the consecutive trials(in 8 out of the 9 rats),and the slope mean was significantly different from *** was a strong correlation between the stimulation parameters(electric Charge per Phase(CPP)and the Number of Pulses(NP))and the observed *** negative Movement Slopes(MS)were highly correlated with the CPP and the NP,as the Pearson's linear correlation coefficients were−0.87 and−0.79,*** MS-CPP coefficients of determination(R-squared)were also between 0.76 and *** addition,the MS-NP coefficients of determination were between 0.63 and ***,it is concluded that the electrical stimulation parameters influence the behavioral outcomes ***,the PAG area may be considered a suitable candidate for forward locomotion control in the future if the area is harnessed effectively to prevent undesirable chaotic behaviors.

关键词： Periaqueductal Gray(PAG) Navigation Ratbot Animal-robot Forward locomotion Movement slope

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Characteristics of turbulent flow in 3-D pools in the presence of submerged rigid vegetation in channel bed

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Journal of Hydrodynamics 2024年第1期36卷 158-169页

作者： Kourosh Nosrati Hossein Afzalimehr Jueyi Sui Hamid reza Reisifar Natural Disasters Prevention Research Center Faculty of Civil EngineeringIran University of Science and TechnologyTehranIran School of Engineering University of Northern British ColumbiaPrince GeorgeCanada

In this study,the interaction between 3-D bedforms and submerged rigid vegetation has been *** laboratory experiments were conducted to study the distribution of flow velocity,Reynolds shear stress,turbulent kinetic energy,and skewness coefficients for a constant density of *** showed that the velocity profile in the pool section deviates from those in the upstream section of the *** has been found that the dip parameter varied between 0.6H and 0.9H depending on various factors including bed roughness,vegetation distribution,and pool entrance/exit ***,scattered vegetation in the pool and differences in slopes created non-uniform flow ***,in the wake region behind each vegetated element,flow velocity reduced significantly,and small-scale eddies are formed,causing increased *** decreasing the entrance slope and bed roughness,relatively uniform flow and weaker turbulence was resulted,but the random distribution of vegetated elements counteracted this balance and intensified *** the decrease in the pool entrance slope,the contribution of sweep event decreased and the contribution of ejection event increased.

关键词： Submerged rigid vegetation 3-D pool Reynolds shear stress skewness coefficients

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Spatially resolved investigation of flame particle interaction in a two dimensional model packed bed

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Particuology 2024年第2期85卷 167-185页

作者： Mohammadhassan Khodsiani reza Namdar Fathollah Varnik Frank Beyrau Benoit Fond Institute of Fluid Dynamics and Thermodynamics Universitaetsplatz 2Magdeburg39106Saxony-AnhaltGermany Interdisciplinary Centre for Advanced Materials Simulation(ICAMS) Ruhr-University BochumBochum44801Germany ONERA The French Aerospace Lab Department of AerodynamicsAeroelasticity and Acoustics(DAAA)Paris-Saclay UniversityMeudon92190France

This study investigates the interaction between a premixed methane-air flame and particles inside a model packed *** opacity of the spherical packed beds to visible light poses a major barrier to the implementation of highly resolved optical diagnostics,so that no detailed experimental data were so far available for the validation of numerical ***,a two-dimensional cylindrical packed bed design is set up,which enables direct line-of-sight optical measurements without loss of spatial reso-lution over the fluid region between the *** this study,the case of cold metallic cylindrical particles(T=377 K)relevant to start-up of a reactor is investigated using internal particle cooling,which also allows cylinder specific heat transfer rate measurements by differential temperature measurements on the coolant *** two dimensional assumption is first verified by measuring the inflow ve-locity and cylinder temperature profile along the *** imaging is then per-formed using a telecentric lens to observe the position and geometry of the two-dimensional flame front with respect to the surrounding cylinders without loss of ***,the cylinder-specific flame to cylinder heat transfer rates and cylinder surface temperature are *** the flame is closely surrounded by the three cooled cylinders,intense heat transfer is observed in this region corresponding to 25±2.5%of the flame thermal *** were stabilised at different positions depending on inflow velocity and equivalence ratio,and a direct correlation between flame to cylinder stand-off distance and the heat transfer rate normalised to the flame thermal power was found for both top and side ***,sidewall quenching distances to the curved cylinder surfaces were evaluated,and seem to be influenced by the presence of a warm recirculation zone behind the *** investigation provides fully resolved flame front position and heat tra

关键词： Packed beds Flame-particle interaction Optical diagnostics Sidewall quenching

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Numerical investigation of supercontinuum generation and optical frequency combs in Si N-based PCF with high nonlinear coefficient

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Optoelectronics Letters 2024年第3期20卷 163-170页

作者： Mohammad reza Alizadeh Mahmood Seifouri Saeed Olyaee Faculty of Electrical Engineering Shahid Rajaee Teacher Training UniversityTehranIran Nano-photonics and Optoelectronics Research Laboratory(NORLab) Shahid Rajaee Teacher Training UniversityTehranIran

In this paper, a photonic crystal fiber(PCF) with a dispersion-engineered and high nonlinear coefficient has been designed for supercontinuum generation(SCG) and frequency comb generation(FCG). The proposed PCF has a Si_(3)N_(4) rod in the core. This rod provides more optical confinement in the core by increasing the refractive index of the core. This high confinement reduces the effective mode area of PCF and thus increases the nonlinear coefficient.

关键词： optical fiber nonlinear

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