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生物质资源与工程(英文) 2023年第2期8卷 108-124页

作者： Akansha Shrivastava Mamta Pal rakesh kumar sharma Department of Biosciences Manipal University JaipurJaipur 303007India Sardar Swaran Singh National Institute of Bio-Energy Jalandhar 144601India

Yeast has been used as a cell factory for thousands of years to produce a wide variety of com-plex biofuels,bioproducts,biochemicals,food ingredients,and pharmaceuticals.For a variety of biotechnological production hosts,a few specific genera of yeast have proven themselves.Rapid developments in metabolic engineering and synthetic biology provide a workable long-term supply solution for these substances.In this review,we have covered recent advances in the design of yeast cell factories for the synthesis of terpenoids,alkaloids,phenylpropanoids,and other natural chemicals,primarily focusing on Pichia species.Cutting-edge solutions involving genetic and process engineering have also been discussed.Overall,the review summarized recent advancements and challenges in synthetic and systems biology,as well as initiatives in metabolic engineering aimed at commercializing non-conventional yeasts like Pichia.The processes used in non-traditional yeasts to produce enzymes,therapeutic proteins,lipids,and metabolic products for industrial applications were thoroughly elaborated.

关键词： Natural product Pichia Non-conventional yeast Biosynthesis System biology Synthetic biology

Vigna radiata var. GM4 Plant Growth Enhancement and Root Colonization by a Multi-Metal-Resistant Plant Growth-Promoting Bacterium Enterobacter sp. C1D in Cr(VI)-Amended Soils

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Pedosphere 2018年第1期28卷 144-156页

作者： Gangavarapu SUBRAHMANYAM rakesh kumar sharma Gattupalli Naresh kumar Gattupalli ARCHANA Department of Microbiology and Biotechnology Centre The Maharaja Sayajirao University of Baroda Department of Biomedical Science Nitte University Center for Science Education and Research (NUCSER) Nitte University Central Muga Eri Research and Training Institute Central Silk Board Department of Biochemistry Faculty of Science The Maharaja Sayajirao University of Baroda

Contamination of agricultural soils by heavy metals has become a major concern due to their toxic effects on plant growth,symbiosis and consequently the yields of crops. In the present study, to enhance plant growth in Cr(VI)-amended soils, novel metalresistant plant growth-promoting bacteria(PGPB) were isolated from a soil contaminated with industrial waste effluent. One of the bacterial isolates, identified as Enterobacter sp. C1 D by 16 S r RNA gene sequencing, was found to be multi-metal resistant in nature with excellent plant growth-promoting(PGP) traits. Mung bean(Vigna radiata var. GM4) inoculation with Enterobacter sp.C1 D significantly(P < 0.01) increased root and shoot length, shoot and root weight, and chlorophyll content in a range of Cr(VI)treatments. Plant tolerance towards Cr(VI) measured as effective concentration showed higher values with Enterobacter sp. C1 Dtreated plants compared to un-inoculated plants. Root colonization study was also carried out using green fluorescence protein-labeled Enterobacter sp. C1 D under a hydroponic system. Confocal laser scanning microscopy of the plant roots showed heavy bacterial loads on the surface of the plant root specifically at the root tip and the point of root hair/lateral root formation. The results of PGP traits showed that elevated indole acetic acid levels and 1-aminocyclopropane-1-carboxylate deaminase activity enabled Enterobacter sp. C1 D to enhance V. radiata growth in Cr(VI)-amended soils, whereby it significantly increased plant tolerance towards elevated Cr(VI) concentrations.

关键词：植物生长农业土壤 var Cr sp 细菌修改激光扫描显微镜

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Strategies to mitigate the adverse effect of drought stress on crop plants-influences of soil bacteria:A review

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Pedosphere 2021年第3期31卷 496-509页

作者： Priyanka CHANDRA Amoolya WUNNAVA Pooja VERMA Amaresh CHANDRA rakesh kumar sharma Indian Council of Agricultural Research(ICAR) Central Soil Salinity Research InstituteKarnalHaryana 132001India Department of Biosciences Manipal University JaipurRajasthanJaipur 303007India Indian Council of Agricultural Research(ICAR) Indian Institute of Sugarcane ResearchUttar PradeshLucknow 226002India

Drought stress affects plant growth and causes significant issues in meeting global demand for food crops and fodder.Drought can cause physiological,physicochemical,and morphological changes in plants,which negatively affects plant growth and productivity.To combat this under the increasing global threat of water shortage and rapid population expansion,it is crucial to develop strategies to meet global food demands.Plant growth-promoting rhizobacteria(PGPR)may provide a safe solution to enhancing crop yields through various mechanisms.These soil bacteria can provide drought tolerance to crop plants,allowing them to survive and thrive in water-scarce conditions.Productions of phytohormones,free radical-scavenging enzymes,and stress-combating enzymes that can increase tolerance to drought-induced stress are key features of plant-associated microbial communities.This review summarizes the beneficial properties of microbes that help plants tolerate water scarcity and highlights the bacterial mechanisms that enhance drought tolerance in plants.

关键词： abiotic stress agricultural yield drought tolerance food crops microbe PGPR rhizobactoria water deficit

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Aptamers—A Promising Approach for Sensing of Biothreats Using Different Bioinformatics Tools

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Soft Nanoscience Letters 2013年第4期3卷 1-5页

作者： Anamika sharma rakesh kumar sharma Department of CBRN Defence Institute of Nuclear Medicine & Allied Sciences Delhi India.

Intentional release of pathogens or biotoxin against humans, plants, or animals is an impending threat all over the world. Continuous monitoring of environment is required for their detection. These signals can help to distinguish whether the bioattack has occurred or not. Biosensors utilise biological response including different biochemical reactions, antigen antibody reactions, electrochemical reactions, aptameric reactions etc. The currently available biosensors have a limit of detection, specificity and less linearity which affect their sensitivity. Aptamers are single stranded oligonucleotides binding species which are capable of tightly binding to their distinguishing targets. They are evolved from random oligonucleotides pools by using different strategies. These are capable of conscientiously distinguishing their target ligands. They have high sensitivity and a wide range of detection limit. The versatility of nucleic acid based methods allowed for the design of specific aptamer sequences, typically on the order of 10 to 30 base pairs in length, identifying the different biothreat agents in the environment. By using different bioinformatics tools we can design RNA aptamers for toxins of lectin family.

关键词： Biosensors Aptamers SELEX Insilco Designing

喜马拉雅山西侧山岭森林的生物量密度、利用和生产动态(英文)

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Journal of Forestry Research 2008年第3期19卷 171-180页

作者： rakesh kumar sharma Prem Lall Sankhayan Ole Hofstad Department of Ecology and Natural Resource Management Norwegian University of life Sciences

证据显示印度喜马偕尔北部的喜马拉雅州森林生物量大量减少。政府通过局部测定核查了森林生物量减少情况。本文以树木生物量来衡量森林退化,评估了主要用地类型内森林生物量的现状,检查了森林可持续性。结果表明,保育林分树木地上部最... 详细信息

证据显示印度喜马偕尔北部的喜马拉雅州森林生物量大量减少。政府通过局部测定核查了森林生物量减少情况。本文以树木生物量来衡量森林退化,评估了主要用地类型内森林生物量的现状,检查了森林可持续性。结果表明,保育林分树木地上部最大生物量平均为1158t·hm-2,保护林、休耕地、耕作非灌溉地、草地、果园和耕地灌溉地的平均生物量依次是728,13,11,8,5和3t·hm-2。当地农民用于烧柴、马料或其他用途的树木生物量仅占可获得的生物总量的0.31%。现在的取用水平只能在短期内维持森林可持续性,从长期来看森林再生不足。采用对数生长模型对未来30年的森林生物量进行料模拟,并通过敏感性分析对影响系统行为的输入变量的相对显著性进行了分析。拟合模型强调了未来的森林资源降低不可避免。政府部门应该积极响应,出台相应政策才能有效地保护森林资源。

关键词：森林退化生物量密度运载容量

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Surface Modification Aspects for Improving Biomedical Properties in Implants:A Review

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Acta Metallurgica Sinica(English Letters) 2024年第2期37卷 213-241页

作者： J.Sharath kumar rakesh kumar Rajeev Verma Industrial and Production Department Dr B R Ambedkar National Institute of Technology JalandharJalandharPunjab144008India

The primary focus during surgery is to ensure successful implantation by achieving long-term and stable fixation of implants.Orthopaedic surgery is now more focused on the development of novel biomaterials intended to improve implant performance.To obtain a better understanding of metal implants,this article investigated the causes of material failures in certain cases and analysed a few case studies.The interaction between the implant and bone tissue was a crucial aspect of successful implantation,and this study explored the factors influencing this interaction as well as ways to improve it.Several modern approaches used for modifying implant surfaces were systematically illustrated and briefly analysed.Thermal spray coatings were often favoured because of their wide range of coating materials,but other substantial surface modifications(such as friction stir processing and laser surface texturing)were also used for a selection of applications.Notably,implant surfaces with desirable features,such as biocompatibility,antibacterial properties,corrosion resistance,and wear resistance,were essential for optimising implant functionality.This systematic review's main aim is to provide exhaustive reference information and a broad overview to advance the production and design of orthopaedic implants.

关键词： Biomaterials Surface treatments Thermal spray coatings Antibacterial Biocompatibility Corrosion resistance Wear resistance

Effect of cooling media on bead geometry,microstructure,and mechanical properties of wire arc additive manufactured IN718 alloy

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Advances in Manufacturing 2024年第1期12卷 124-149页

作者： Parveen kumar Satish kumar sharma Ratnesh kumar Raj Singh Department of Mechanical Engineering Thapar Institute of Engineering and TechnologyPatialaPunjab147004India

This work aims to present and explore thermal management techniques for the wire arc additive manufacturing(WAAM)of IN718 components.Excessive heat can be mitigated via air or water cooling.In this study,the material was deposited under four different heat-input conditions with air or water cooling.In air cooling,the layer is deposited in a normal atmospheric air environment,whereas with water cooling,the material is deposited inside a water tank by varying the water level.To validate the air and water cooling thermal management techniques,IN718 single-pass and multilayer linear walls were deposited using the bidirectional gas metal arc welding based WAAM setup under four different heat input conditions.During the deposition of single layers,the temperature profiles were recorded,and the geometric and microstructural features were explored.For multilayer wall structures,the mechanical properties(hardness,tensile strength,and elongation)were determined and assessed using the corresponding microstructural features explored through scanning electron microscopy(SEM),energy dispersive spectroscopy(EDS),and electron backscatter diffraction(EBSD)analyses.The microstructure observed through SEM analysis in the building direction was found to be nonhomogenous compared with that in the deposition direction.Moreover,water cooling was found to govern bead characteristics,such as wall width and height.The grain size and anisotropy of the mechanical properties also decreased in the water-cooled case.Hence,water cooling is an economical and efficient method to mitigate excessive heat accumulation in WAAM-deposited IN718.

关键词： Air cooling Water cooling IN718 Bead characteristics Microstructure Electron backscatter diffraction(EBSD)

Targeting brain tumors with innovative nanocarriers:bridging the gap through the blood-brain barrier

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Oncology Research 2024年第5期32卷 877-897页

作者： KARAN WADHWA PAYAL CHAUHAN SHOBHIT kumar rakesh PAHWA RAVINDER VERMA RAJAT GOYAL GOVIND SINGH ARCHANA sharma NEHA RAO DEEPAK KAUSHIK Department of Pharmaceutical Sciences Maharshi Dayanand UniversityRohtak124001India Department of Pharmaceutical Technology Meerut Institute of Engineering and Technology(MIET)NH-58Delhi-Roorkee HighwayMeerut250005India Institute of Pharmaceutical Sciences Kurukshetra UniversityKurukshetra136119India Department of Pharmaceutical Sciences Chaudhary Bansi Lal UniversityBhiwani127021India MM College of Pharmacy Maharishi Markandeshwar(Deemed to be University)Mullana-AmbalaHaryana133207India Delhi Pharmaceutical Sciences and Research University(DIPSAR) Delhi Pharmaceutical Sciences and Research UniversityNew Delhi110017India

Background:Glioblastoma multiforme(GBM)is recognized as the most lethal and most highly invasive tumor.The high likelihood of treatment failure arises fromthe presence of the blood-brain barrier(BBB)and stemcells around GBM,which avert the entry of chemotherapeutic drugs into the tumormass.Objective:Recently,several researchers have designed novel nanocarrier systems like liposomes,dendrimers,metallic nanoparticles,nanodiamonds,and nanorobot approaches,allowing drugs to infiltrate the BBB more efficiently,opening up innovative avenues to prevail over therapy problems and radiation therapy.Methods:Relevant literature for this manuscript has been collected from a comprehensive and systematic search of databases,for example,PubMed,Science Direct,Google Scholar,and others,using specific keyword combinations,including“glioblastoma,”“brain tumor,”“nanocarriers,”and several others.Conclusion:This review also provides deep insights into recent advancements in nanocarrier-based formulations and technologies for GBM management.Elucidation of various scientific advances in conjunction with encouraging findings concerning the future perspectives and challenges of nanocarriers for effective brain tumor management has also been discussed.

关键词： Glioblastoma Brain tumor Blood-brain barrier Liposomes Metallic nanoparticles Nanocarriers

Critical Review on Balanites aegyptiaca Delile: Phytoconstituents, Pharmacological Properties and Nanointerventions

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Chinese Journal of Integrative Medicine 2024年第7期30卷 653-663页

作者： Surendra kumar Gautam rakesh kumar Paul Devesh M.Sawant Amita Sarwal Kaisar Raza Department of Pharmacy School of Chemical Sciences and Pharmacy Central University of Rajasthan University Institute of Pharmaceutical Sciences Panjab University

Balanites aegyptiaca Delile(BA) is an enduring xerophytic woody and spinous flowering tree and is commonly known as desert date or Ingudi(Hingot). It belongs to the family Zygophyllaceae, which is specific to be drought areas of Nigeria, Africa, South Asia and India(Rajasthan). In Ayurveda, this traditional medicinal plant is reported for the management of jaundice, syphilis, yellow fever, metabolic disorders, liver, and spleen problems. The main aim of the review is to compile its medicinal uses and further advancements to showcase the promises inherited in various parts of the plant for the benefit of mankind. As per the literature survey, various researchers have focused on the detailed investigation of BA including the phytopharmacological evidence, chemical constituents, nano-formulations, commercialized products, and clinical trials. Several remarkable scaffolds and isolated compounds like diosgenin, yamogenin, balanitin1/2, balanitin 3, bal4/5, bal6/7, rutin-3-glycosides, 3,7-diglycosides,(3, 12, 14, 16)–(12-hydroxycholest-5-ene-3,16-diyl-bis)-D-glucopyranoside and balanitoside have been identified. Additionally, this traditional plant has been scientifically proven by in vitro and in vivo. Based on the complete review of this plant, most of the compounds have been isolated from the fruit and kernel part. Additionally, based on the literature, a histogram was developed for pharmacological activity in which antidiabetic study was found to be more compared to other pharmacological activity. As a spinous desert dates, this plant needs to be explored more to bring out newer phytochemicals in the management of various diseases.

关键词： Delile desert date phytochemicals nano-phytopharmaceutical pharmacological activities traditional medicine

Deep learning models for tuberculosis detection and infected region visualization in chest X-ray images

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Intelligent Medicine 2024年第2期4卷 104-113页

作者： Vinayak sharma Nillmani Sachin kumar Gupta Kaushal kumar Shukla School of Electronics and Communication Engineering Shri Mata Vaishno Devi University Jammu and KashmirIndia School of Biomedical Engineering Indian Institute of TechnologyBanaras Hindu UniversityVaranasiIndia Department of Computer Science and Engineering Indian Institute of TechnologyBanaras Hindu UniversityVaranasiIndia

Objective Tuberculosis(TB)is among the most frequent causes of infectious-disease-related mortality.Despite being treatable by antibiotics,tuberculosis often goes misdiagnosed and untreated,especially in rural and low-resource areas.Chest X-rays are frequently used to aid diagnosis;however,this presents additional challenges because of the possibility of abnormal radiological appearance and a lack of radiologists in areas where the infection is most prevalent.Implementing deep-learning-based imaging techniques for computer-aided diagnosis has the potential to enable accurate diagnoses and lessen the burden on medical specialists.In the present work,we aimed to develop deep-learning-based segmentation and classification models for accurate and precise detection of tuberculosis in chest X-ray images,with visualization of infection using gradient-weighted class activation mapping(Grad-CAM)heatmaps.Methods First,we trained the UNet segmentation model using 704 chest X-ray radiographs taken from the Montgomery County and Shenzhen Hospital datasets.Next,we implemented the trained UNet model on 1,400 tuberculosis and control chest X-ray scans to segment the lung region.The images were taken from the National Institute of Allergy and Infectious Diseases(NIAID)TB portal program dataset.Then,we applied the deep learning Xception model to classify the segmented lung region into tuberculosis and normal classes.We further investigated the visualization capabilities of the model using Grad-CAM to view tuberculosis abnormalities in chest X-rays and discuss them from radiological perspectives.Results For segmentation by the UNet model,we achieved accuracy,Jaccard index,Dice coefficient,and area under the curve(AUC)values of 96.35%,90.38%,94.88%,and 0.99,respectively.For classification by the Xception model,we achieved classification accuracy,precision,recall,F1-score,and AUC values of 99.29%,99.30%,99.29%,99.29%,and 0.999,respectively.The Grad-CAM heatmap images from the tuberculosis class showed similar heatmap patterns,where l

关键词： Tuberculosis Artificial intelligence Deep learning Segmentation Classification Chest X-ray