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Fungal Diversity 2013年第1期58卷 33-45页

作者： Martina Hujslová Alena kubátová Martin kostovčík miroslav kolařík Department of Botany Faculty of ScienceCharles University in PragueBenátská2CZ-12801 Prague 2Czech Republic Laboratory of Fungal Genetics and Metabolism Institute of Microbiology of the ASCRv.v.i.Vídeňská1083CZ-14220 Prague 4Czech Republic Research Institute of Crop Production Drnovská507Prague 6 CZ-16106Czech Republic Department of Genetics and Microbiology Faculty of ScienceCharles University in PragueViničná5CZ-12844 Prague 2Czech Republic

Extremely acidic soils(pH<3)harbour mycobiota that are different from less acidic habitats and are dominated by a small number of fungal species.During investigation of the mycobiota of highly acidic soils in the Czec... 详细信息

Extremely acidic soils(pHks and lichens collected in the Alps and Antarctica as well as leaf-spotting species and opportunistic human pathogens.The isolates belonging to the second and the third lineages were identified as the recently described acidophilic fungi Acidomyces acidophilus and Teratosphaeria acidotherma,respectively.The taxonomic status of both sister species is discussed and the latter species is ascribed here to the genus Acidomyces.

关键词： Black yeast Acidotolerant Acidomyces acidophilus Teratosphaeria acidotherma Soil fungi Ascomycota

Diversity of foliar endophytes in wind-fallen Picea abies trees

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Fungal Diversity 2012年第3期54卷 69-77页

作者： Ondřej koukol miroslav kolařík Zuzana kolářová Petr Baldrian Department of Botany Faculty of ScienceCharles University in PragueBenátská212801 Prague 2Czech Republic Laboratory of Genetics Physiology and Bioengineering of FungiInstitute of Microbiology of the ASCRv.v.i.Vídeňská108314220 Prague 4Czech Republic Laboratory of Environmental Microbiology Institute of Microbiology of the ASCRv.v.i.Vídeňská108314220 Prague 4Czech Republic

The unmanaged Norway spruce montane forests in the Bohemian Forest National Park(Czech Republic)suffered from repeated large-scale bark beetle outbreaks in last decade.In this study,the diversity of culturable foliar endophyte microfungi in needles originating from eleven recently wind-fallen trees in this area was surveyed.Our aims were to describe their diversity and to determine the relative host and organ specificities of isolated endophyte species to estimate the species pool and abundance of foliar endophytes before the forest degradation.Microfungi were isolated from surface-sterilized needles,and the outgrowing strains were identified based on morphological and molecular characteristics(analyses of ITS1,ITS2 and partial 28S rDNA).Fungal communities in the needles were diverse,with ascomycetes(mostly anamorphs of Helotiales)dominating basidiomycetes.The most frequent species(Phacidiopycnis sp.,Cistella acuum,Sirococcus sp.and two species of Chalara)did not correspond with those recorded in previous studies of Picea spp.For example,the widely distributed Lophodermium piceae was rarely recorded in this study.This pattern may be caused by different methods of sterilization and cultivation or by physiological characteristics of the needles,or it may reflect the species distribution in the studied area.Members of the Helotiales,along with sequences from GenBank,showed substantial overlap in host affinities,most prominently between Pinus and Picea,and also among species from distant plant lineages.

关键词： Morphospecies ITS rDNA Culturable microfungi Phacidiopycnis Host affinity

New strategies in the diagnosis and treatment of immune-checkpoint inhibitor-mediated colitis

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World Journal of Clinical Cases 2024年第6期12卷 1050-1062页

作者： Tsvetelina Velikova Boris krastev Milena Gulinac miroslav Zashev Vasko Graklanov Milena Peruhova Medical Faculty Sofia University St.Kliment OhridskiSofia 1407Bulgaria Medical Center Nadezhda Medical Center NadezhdaSofia 1407Bulgaria General and Clinical Pathology Medical University of PlovdivPlovdiv 4002Bulgaria Department of General Surgery University Hospital“Heart and Brain”Burgas 8000Bulgaria First Department of Internal Diseases Medical University of PlovdivPlovdiv 4000Bulgaria Department of Hematology University Hospital“St.George”Plovdiv 4000Bulgaria Division of Gastroenterology University Hospital“Heart and Brain”Burgas 1000Bulgaria

Immune-checkpoint inhibitor-mediated colitis(IMC)is an increasingly recognized adverse event in cancer immunotherapy,particularly associated with immune checkpoint inhibitors(ICIs)such as anti-cytotoxic T-lymphocyte antigen-4 and anti-programmed cell death protein-1 antibodies.As this revolutionary immunotherapy gains prominence in cancer treatment,understanding,diagnosing,and effectively managing IMC becomes paramount.IMC represents a unique challenge due to its immune-mediated nature and potential for severe complications.However,a precise picture of IMC pathophysiology is currently unavailable.Therefore,we aimed to summarize the existing data while acknowledging the need for further research.This comprehensive review explores the mechanisms underlying ICIs,gastrointestinal adverse effects,and,in particular,IMC’s incidence,prevalence,and features.Our review also emphasizes the importance of recognizing IMC’s distinct clinical and histopathological features to differentiate it from other forms of colitis.Furthermore,this paper highlights the urgentneed for evolving diagnostic methods,therapeutic strategies,and a multidisciplinary approach to effectively manage IMC.

关键词： Immune-checkpoint inhibitors Immune-checkpoint inhibitor-mediated colitis Inhibitor-mediated colitis management Immunotherapy-associated colitis Checkpoint inhibitor-induced colitis Gastrointestinal adverse effects Checkpoint inhibitor toxicity Inhibitor-mediated colitis therapy

Exploring Deep Learning Methods for Computer Vision Applications across Multiple Sectors:Challenges and Future Trends

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Computer Modeling in Engineering & Sciences 2024年第4期139卷 103-141页

作者： Narayanan Ganesh Rajendran Shankar miroslav Mahdal Janakiraman SenthilMurugan Jasgurpreet Singh Chohan kanak kalita School of Computer Science and Engineering Vellore Institute of TechnologyChennai600127India Department of Computer Science and Engineering Koneru Lakshmaiah Education FoundationVaddeswaram522502India Department of Control Systems and Instrumentation Faculty of Mechanical EngineeringVSB-Technical University of OstravaOstrava70800Czech Republic Department of Computer Science and Engineering Vel Tech High Tech Dr.Rangarajan Dr.Sakunthala Engineering CollegeChennai600062India Department of Mechanical Engineering and University Centre for Research&Development Chandigarh UniversityMohali140413India Department of Mechanical Engineering Vel Tech Rangarajan Dr.Sagunthala R&D Institute of Science and TechnologyAvadi600062India

Computer vision(CV)was developed for computers and other systems to act or make recommendations based on visual inputs,such as digital photos,movies,and other media.Deep learning(DL)methods are more successful than other traditional machine learning(ML)methods inCV.DL techniques can produce state-of-the-art results for difficult CV problems like picture categorization,object detection,and face recognition.In this review,a structured discussion on the history,methods,and applications of DL methods to CV problems is presented.The sector-wise presentation of applications in this papermay be particularly useful for researchers in niche fields who have limited or introductory knowledge of DL methods and CV.This review will provide readers with context and examples of how these techniques can be applied to specific areas.A curated list of popular datasets and a brief description of them are also included for the benefit of readers.

关键词： Neural network machine vision classification object detection deep learning

New species in Aspergillus section Fumigati from reclamation sites in Wyoming (U.S.A.) and revision of A. viridinutans complex

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Fungal Diversity 2014年第1期64卷 253-274页

作者： Alena Nováková Vit Hubka Zuzana Dudová Tetsuhiro Matsuzawa Alena kubátová Takashi Yaguchi miroslav kolařík Biology Centre AS CR v.v.i.Institute of Soil BiologyNa Sádkách 737005ČeskéBudějoviceCzech Republic Laboratory of Physiology and Genetics of Fungi Institute of Microbiology AS CRv.v.iVídeňská108314220 Prague 4Czech Republic Department of Botany Faculty of ScienceCharles University in PragueBenátská212801 Prague 2Czech Republic Medical Mycology Research Center Chiba University1-8-1InohanaChuo-kuChiba 260-8673Japan

The Aspergillus viridinutans complex includes morphologically similar,soil-inhabiting species.Although its species boundaries have not been fully defined,many isolates from the complex have been isolated as opportunistic human and animal pathogens.In the present study,these species were dominant in spoil sites subjected to various types of reclamation management after coal mining.These species were characterised using two different PCR-fingerprinting methods,sequence data from the β-tubulin(benA)and calmodulin(caM)genes,macro-and micromorphology(optical and scanning electron microscopy),maximum growth temperatures and mating experiments.In addition,RNA polymerase II gene(RPB2),actin(act1)and ITS sequences were deposited for the ex-type isolates of newly described species.The mating experiment results,phylogenetic analyses and ascospore morphology suggested the presence of five species in the A.viridinutans complex.Aspergillus aureolus(syn.Neosartorya aureola)was the only homothallic species.Three species,A.felis,A.udagawae(syn.N.udagawae)and A.wyomingensis sp.nov.,were heterothallic and their morphologically distinguishable teleomorph was induced by systematic mating experiments.Aspergillus viridinutans s.***.seems to be a very rare species and was represented only by the ex-type isolate in which the MAT1-1 locus was amplified.Aspegillus viridinutans and A.aureolus were typified in accordance with the rules of the new botanical code.Other species outside the A.viridinutans complex isolated from the reclamation sites were A.fumigatiaffinis and A.lentulus as well as two new sister species,A.brevistipitatus sp.***.and A.conversis sp.***.which were closely related each to other and to N.papuensis.Both new species are phylogenetically distant from all anamorphic species and resemble A.brevipes,A.duricaulis and A.unilateralis in micromorphology and are distinguishable from each other by the slower growth of A.conversis on all tested media.Interestingly,no isolate from the reclamation sites represented A.fumigatus s.str

关键词： Aspergillus fumigatus Heterothallic species MAT locus Neosartorya udagawae PCR fingerprinting Soil fungi

In vivo femtosecond laser nanosurgery of the cell wall enabling patch-clamp measurements on filamentous fungi

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Microsystems & Nanoengineering 2024年第2期10卷 251-267页

作者： Tanja Pajić katarina Stevanović Nataša V.Todorović Aleksandar J.krmpot miroslavŽivić Svetlana Savić-Šević Steva M.Lević Marina Stanić Dejan Pantelić Brana Jelenković Mihailo D.Rabasović Institute of Physiology and Biochemistry“Ivan Djaja” Faculty of BiologyUniversity of BelgradeStudentski trg 1611158BelgradeSerbia Institute for Biological Research“Siniša Stanković” University of BelgradeNational Institute of the Republic of SerbiaBulevar Despota Stefana 14211000BelgradeSerbia Institute of Physics Belgrade University of BelgradeNational Institute of the Republic of SerbiaPregrevica 11811080BelgradeSerbia University of Belgrade Faculty of AgricultureNemanjina Street 611080BelgradeSerbia Institute for Multidisciplinary Research University of BelgradeKneza Višeslava 111030BelgradeSerbia

Studying the membrane physiology of filamentous fungi is key to understanding their interactions with the environment and crucial for developing new therapeutic strategies for disease-causing pathogens.However,their plasma membrane has been inaccessible for a micron-sized patch-clamp pipette for pA current recordings due to the rigid chitinous cell wall.Here,we report the first femtosecond IR laser nanosurgery of the cell wall of the filamentous fungi,which enabled patch-clamp measurements on protoplasts released from hyphae.A reproducible and highly precise(diffraction-limited,submicron resolution)method for obtaining viable released protoplasts was developed.Protoplast release from the nanosurgery-generated incisions in the cell wall was achieved from different regions of the hyphae.The plasma membrane of the obtained protoplasts formed tight and high-resistance(GΩ)contacts with the recording pipette.The entire nanosurgical procedure followed by the patch-clamp technique could be completed in less than 1 hour.Compared to previous studies using heterologously expressed channels,this technique provides the opportunity to identify new ionic currents and to study the properties of the ion channels in the protoplasts of filamentous fungi in their native environment.

关键词： patch recording laser

Sc元素添加对双辊铸轧Al−Cu−Li−Mg−Zr基合金热处理的影响

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Transactions of Nonferrous Metals Society of China 2024年第6期34卷 1759-1773页

作者： Rostislav kRÁLÍk Barbora kŘIVSkÁ Lucia BAJTOŠOVÁ Mykhailo STOLBCHENkO Mirko SCHAPER Olexandr GRYDIN miroslav CIESLAR Department of Physics of Materials Faculty of Mathematics and PhysicsCharles UniversityKe Karlovu 512116PragueCzech Republic Department of Materials Science Faculty of Mechanical EngineeringUniversity of PaderbornWarburger Straße 10033098PaderbornGermany

提出制备含Sc的Al−Cu−Li−Mg−Zr基合金带材的工艺方案。即先采用双辊铸轧技术制备近净形状的3 mm厚带材,再对其进行均匀化/固溶处理。研究两种Al−Cu−Li−Mg−Zr基双辊铸轧合金,其中一种添加质量分数为0.17%的Sc,另一种未添加Sc。两种合金... 详细信息

提出制备含Sc的Al−Cu−Li−Mg−Zr基合金带材的工艺方案。即先采用双辊铸轧技术制备近净形状的3 mm厚带材,再对其进行均匀化/固溶处理。研究两种Al−Cu−Li−Mg−Zr基双辊铸轧合金,其中一种添加质量分数为0.17%的Sc,另一种未添加Sc。两种合金均先在300℃下退火30 min,然后在450℃下退火30 min以及530℃下退火30 min,随后进行室温水淬。前两段退火后组织中生成了细小、弥散的Al_(3)Zr/Al_(3)(Sc,Zr)颗粒。最后的退火步骤起到了均匀化/固溶处理的作用。双辊铸轧材料的细小晶粒结构使含有主要合金元素的原始颗粒在较短的退火时间内溶解。缩短保温时间可以限制表面层中Li的耗尽和Al_(3)Zr/Al_(3)(Sc,Zr)弥散相的明显粗化。铸态含Sc材料已经具有明显细小的晶粒结构,而经均匀化/固溶处理后生成的Al_(3)(Sc,Zr)弥散相抑制了晶粒在高温下发生粗化。在后续180℃下时效处理后,形成了θʹ(Al_(2)Cu)、T1(Al_(2)CuLi)和S'(Al_(2)CuMg)强化相。在峰值时效状态下,屈服强度提高了200 MPa,这一数值与类似直接冷却铸造材料的相当,从而证实了所提方案的合理性。

关键词：显微组织力学性能 Al−Cu−Li基合金 Sc合金化双辊铸轧

Resolving the taxonomy of emerging zoonotic pathogens in the Trichophyton benhamiae complex

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Fungal Diversity 2020年第5期104卷 I0001-I0055页

作者： AdélaČmoková miroslav kolařík Radim Dobiáš Lois L.Hoyer Helena Janouškovcová Rui kano Ivana kuklová Pavlína Lysková Lenka Machová Thomas Maier Naďa Mallátová Matěj Man karel Mencl Pietro Nenoff Andrea Peano Hana Prausová Dirk Stubbe Silke Uhrlaß TomášVětrovský Cornelia Wiegand Vit Hubka Department of Botany Faculty of ScienceCharles UniversityPragueCzech Republic Laboratory of Fungal Genetics and Metabolism Institute of MicrobiologyCzech Academy of SciencesPragueCzech Republic Public Health Institute in Ostrava OstravaCzech Republic Department of Biomedical Sciences Institute of Microbiology and ImmunologyFaculty of MedicineUniversity of OstravaOstravaCzech Republic Department of Pathobiology University of Illinois at Urbana-ChampaignUrbanaILUSA Faculty of Medicine in Pilsen Biomedical CenterCharles UniversityPilsenCzech Republic Department of Veterinary Dermatology Nihon University College of Bioresource SciencesFujisawaJapan Department of Dermatology and Venereology First Faculty of MedicineGeneral University Hospital in PragueCharles University and General University Hospital in PraguePragueCzech Republic Public Health Institute inÚstíNad Labem PragueCzech Republic Microbiological Laboratory/R&D Bioanalytics Bruker Daltonik GmbHBremenGermany Laboratory of Medical Parasitology and Mycology HospitalČeskéBudějoviceČeskéBudějoviceCzech Republic Institute of Botany Czech Academy of SciencesPrůhoniceCzech Republic Pardubice Regional Hospital PardubiceCzech Republic Laboratory of Medical Microbiology MölbisGermany Department of Veterinary Sciences University of TurinTurinItaly Clinical Veterinary Laboratory Labvet PragueCzech Republic Mycology and Aerobiology Service SciensanoBrusselsBelgium Laboratory of Environmental Microbiology Institute of MicrobiologyCzech Academy of SciencesPragueCzech Republic Department of Dermatology University Hospital JenaJenaGermany

Species of the Trichophyton benhamiae complex are predominantly zoophilic pathogens with a worldwide distribution.These pathogens have recently become important due to their epidemic spread in pets and pet owners.Considerable genetic and phenotypic variability has been revealed in these emerging pathogens,but the species limits and host spectra have not been clearly elucidated.In this study,we used an approach combining phylogenetic analysis based on four loci,population-genetic data,phenotypic and physiological analysis,mating type gene characterization and ecological data to resolve the taxonomy of these pathogens.This approach supported the inclusion of nine taxa in the complex,including three new species and one new variety.Trichophyton benhamiae var.luteum var.nov.(“yellow phenotype”strains)is currently a major cause of zoonotic tinea corporis and capitis in Europe(mostly transmitted from guinea pigs).The isolates of the“white phenotype”do not form a monophyletic group and are segregated into three taxa,T.benhamiae var.benhamiae(mostly North America;dogs),T.europaeum sp.nov.(mostly Europe;guinea pigs),and T.japonicum sp.nov.(predominant in East Asia but also found in Europe;rabbits and guinea pigs).The new species T.africanum sp.***.is proposed for the“African”race of T.benhamiae.The introduction to new geographic areas and host jump followed by extinction of one mating type gene have played important roles in the evolution of these pathogens.Due to considerable phenotypic similarity of many dermatophytes and phenomena such as incomplete lineage sorting or occasional hybridization and introgression,we demonstrate the need to follow polyphasic approach in species delimitation.Neutrally evolving and noncoding DNA regions showed significantly higher discriminatory power compared to conventional protein-coding loci.Diagnostic options for species identification in practice based on molecular markers,phenotype and MALDI-TOF spectra are presented.A microsatellite typing scheme developed in this study is a powerful

关键词： Epizootic fungal infections Microsatellite typing scheme Multigene phylogeny Population genetic structure Superficial skin infections Zoophilic dermatophytes

Effects of sampling frequency on node mobility prediction in dynamic networks: A spectral view

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数字通信与网络:英文版 2023年第4期9卷 1009-1022页

作者： Peppino Fazio Miralem Mehic miroslav Voznak DSMN Ca’Foscari University of VeniceVia Torino 15530172MestreVEItaly Department of Telecommunications Faculty of Electrical EngineeringUniversity of Sarajevo Zmaja od Bosne bb71000SarajevoBosnia and Herzegovina VSB–Technical University of Ostrava 17.listopadu 2172/1570800OstravaCzech Republic

The field of mobility prediction has been widely investigated in the recent past,especially the reduction of the coverage radius of cellular networks,which led to an increase in hand-over events.Changing the cell coverage very frequently,for example,may lead to service disruptions if a predictive approach is not deployed in the system.Although several works examined mobility prediction in the new-generation mobile networks,all of these studies focused on studying the time features of mobility traces,and the spectral content of historical mobility patterns was not considered for prediction purposes as yet.In the present study,we propose a new approach to mobility prediction by analyzing the effects of a proper mobility sampling frequency.The proposed approach lies in the mobility analysis in the frequency domain,to extract hidden features of the mobility process.Thus,we proposed a new methodology to determine the spectral content of mobility traces(considered as signals)and,thus,the appropriate sampling frequency,which can provide numerous advantages.We considered several types of mobility models(e.***.pedestrian,urban,and vehicular),containing important details in the time and frequency domains.Several simulation campaigns were performed to observe and analyze the characteristics of mobility from real traces and to evaluate the effects of sampling frequency on the spectral content.

关键词： Mobile networking Frequency domain Mobility spectrum

Determination of the sensible heat effectiveness and pressure loss of a rotary regenerative heat exchanger using CFD

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Building Simulation 2023年第6期16卷 869-887页

作者： Vladimír Zmrhal Petr Zelenský Jindřich Boháč Martin Barták miroslav kučera Roman Vavřička Faculty of Mechanical Engineering Department of Environmental EngineeringCzech Technical University in PragueTechnická416000Prague 6Czech Republic

The paper presents a new method to determine the sensible effectiveness and pressure loss of rotary regenerative heat exchangers using computational fluid dynamics(CFD).It is based on CFD simulations of a single thermal wheel microchannel with a small cross-sectional area and thin walls,with cyclic inlet and outlet boundary conditions.Two unique measurement set-ups were designed and built for the experimental measurement of the heat exchanger characteristics.Five different types of thermal wheels were manufactured,measured,and simulated in ANSYS Fluent.All wheels achieve an effectiveness greater than 73%under certain(air flow)conditions,which is the minimum effectiveness required by Ecodesign(in the EU).For the examined exchangers,the effectiveness ranges from 66.5%to 83.3%,depending on the boundary conditions and geometric parameters of the rotors.The highest sensible effectiveness is achieved by heat exchangers with the largest heat exchange surface Ac;on the other hand,these wheels have the largest pressure loss.The paper discusses the use of a simplifiedε-NTU correlation model for the HVAC systems(typically C*=1).The correlation model and CFD results were compared and found to be different from each other.The results of the CFD simulation were compared with measurements to prove that the proposed simulation method can predict the behaviour of the real heat exchanger as a whole.It was demonstrated that the sensible effectiveness and pressure loss of the rotary heat exchanger predicted by the CFD simulations correspond well to the measured values within the measurement uncertainty±1.3%.The proposed method can be used for the comparison of different rotary regenerative heat exchangers before their manufacturing and for verification that they meet the EU Ecodesign requirements set by the current legislation.It reduces the cost of the initial optimisation and testing of new designs.

关键词： rotary heat exchanger heat wheel microchannel heat recovery sensible effectiveness pressureloss computer fluid dynamics experiment