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GeoChip-based microbial functions in biogeochemical cycles and their responses to environmental factors in Tengchong hot springs

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Journal of Earth Science 2024年

作者： Muhammad Inayat Ullah Khan liuqin huang Geng Wu Jian Yang Xiangyu Guan Hongchen Jiang School of Environmental Studies China University of Geosciences School of Ocean Sciences China University of Geosciences Beijing State Key Laboratory of Biogeology and Environmental Geology China University of Geosciences

Microorganisms actively participate in biogeochemical cycling processes and play a crucial role in maintaining the dynamic balance of hot spring ecosystems. However， the distribution of microbial functional genes and their influencing factors in hot springs remain largely unclear. Therefore， this study investigated the microbial functional genes and their potential for controlling biogeochemical cycles (C， N， S， and P) in the hot Springs of Tengchong， China， using the Geochip method， a functional gene microarray technology. The examined hot springs have very different microbial functional genes. A total of 22736 gene probe signals were identified， belonging to 567 functional genes and associated with 15 ecological functions， mainly involving stress response， carbon cycle， nitrogen cycle， sulfur cycle， phosphorus cycle and energy processes. The amyA， narG， dsrA and ppx genes were most abundant in carbon， nitrogen， sulfur and phosphorus cycles， respectively， and were significantly correlated with pH， temperature and SO42-. The diversity and abundance of detected gene probes were negatively correlated with temperature. The α-diversity (i.e.， Shannon index) was high at low temperature and low pH. Molecular functional interactions revealed by the gene connectivity levels were negatively correlated with temperature， pH and SO42-. These results suggested that the abundance， diversity and interactions of microbial functional genes were significantly influenced by geochemical parameters?. In addition， some genera possessed functional genes related to carbon， nitrogen， sulfur， and phosphorus cycles and can synergistically control the biogeochemical cycles of carbon， nitrogen， sulfur and phosphorus. These findings provide new insights into the functional potentials of microorganisms to participate in biogeochemical cycles and their responses to environmental factors in hot springs.

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A critical review of mineral-microbe interaction and co-evolution:mechanisms and applications

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National Science Review 2022年第10期9卷 209-229页

作者： Hailiang Dong liuqin huang Linduo Zhao Qiang Zeng Xiaolei Liu Yizhi Sheng Liang Shi Geng Wu Hongchen Jiang Fangru Li Li Zhang Dongyi Guo Gaoyuan Li Weiguo Hou Hongyu Chen Center for Geomicrobiology and Biogeochemistry Research State Key Laboratory of Biogeology and Environmental Geology China University of Geosciences State Key Laboratory of Biogeology and Environmental Geology China University of Geosciences Illinois Sustainable Technology Center Illinois State Water Survey University of Illinois at Urbana-Champaign Department of Geology and Environmental Earth Science Miami University

Mineral-microbe interactions play important roles in environmental change,biogeochemical cycling of elements and formation of ore deposits.Minerals provide both beneficial(physical and chemical protection,nutrients,and energy) and detrimental(toxic substances and oxidative pressure) effects to microbes,resulting in mineral-specific microbial colonization.Microbes impact dissolution,transformation and precipitation of minerals through their activity,resulting in either genetically controlled or metabolism-induced biomineralization.Through these interactions,minerals and microbes co-evolve through Earth history.Mineral-microbe interactions typically occur at microscopic scale but the effect is often manifested at global scale.Despite advances achieved through decades of research,major questions remain.Four areas are identified for future research:integrating mineral and microbial ecology,establishing mineral biosignatures,linking laboratory mechanistic investigation to field observation,and manipulating mineral-microbe interactions for the benefit of humankind.

关键词： biomineralization co-evolution interactions microbe mineral nutrients

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Microbial diversity accumulates in a downstream direction in the Three Gorges Reservoir

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Journal of Environmental Sciences 2021年第3期33卷 156-167页

作者： Shang Wang Weiguo Hou Hongchen Jiang liuqin huang Hailiang Dong Shu Chen Bin Wang Yongcan Chen Binliang Lin Ye Deng CAS Key Laboratory of Environmental Biotechnology Research Center for Eco-Environmental SciencesChinese Academy of SciencesBeijing 100085China School of Environment and Resource Southwest University of Science and TechnologySichuan 621010China State Key Laboratory of Biogeology and Environmental Geology China University of GeosciencesBeijing 100083China School of Ocean Sciences China University of GeosciencesBeijing 100083China State Key Laboratory of Biogeology and Environmental Geology China University of GeosciencesWuhan 430074China Department of Hydraulic Engineering Tsinghua UniversityBeijing 100084China Department of Geology and Environmental Earth Science Miami UniversityOxfordOH 45056USA

Organic and inorganic materials migrate downstream and have important roles in regulating environmental health in the river networks.However,it remains unclear whether and how a mixture of materials(i.e.,microbial species)from various upstream habitats contribute to microbial community coalescence upstream of a dam.Here we track the spatial variation in microbial abundance and diversity in the Three Gorges Reservoir based on quantitative PCR and 16 S rRNA gene high-throughput sequencing data.We further quantitatively assess the relative contributions of microbial species from mainstem,its tributaries,and the surrounding riverbank soils to the area immediately upstream of the Three Gorges Dam(TGD).We found an increase of microbial diversity and the convergent microbial distribution pattern in areas immediately upstream of TGD,suggesting this area become a new confluence for microbial diversity immigrating from upstream.Indeed,the number of shared species increased from upstream to TGD but unique species decreased,indicating immigration of various sources of microbial species overwhelms local environmental conditions in structuring microbial community close to TGD.By quantifying the sources of microbial species close to TGD,we found little contribution from soils as compared to tributaries,especially for sites closer to TGD,suggesting tributary microbes have greater influence on microbial diversity and environmental health in the Three Gorges Reservoir.Collectively,our results suggest that tracking microbial geographic origin and evaluating accumulating effects of microbial diversity shed light on the ecological processes in microbial communities and provide information for regulating aquatic ecological health.

关键词： Three Gorges Dam Microbial source tracking Microbial community coalescence Immigration Accumulating effect

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Microbial diversity in two cold springs on the Qinghai-Tibetan Plateau

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Geoscience Frontiers 2012年第3期3卷 317-325页

作者： Gaoyuan Li Hongchen Jiang Weiguo Hou Shang Wang liuqin huang Huilei Ren Shicai Deng Hailiang Dong State Key Laboratory of Biogeology and Environmental Geology China University of GeosciencesBeijing 100083China AE&E Geomicrobial Technologies Inc.Beijing 102200China Department of Geology and Environmental Earth Science Miami UniversityOxfordOH 45056USA

The microbial diversity in Wuli Area, Qinghai-Tibetan Plateau was investigated using 16S rRNA gene phylogenetic analyses. A total of 117 bacterial and 66 archaeal 16S rRNA gene clones were obtained from the Wuli cold springs, The bacterial clones could be classified into Proteobacteria, Acid- obacteria, Deinococci, Sphingobacteria, Flavobacteria, Nitrospirae, Actinobacteria, Gemmatimona- detes, and unclassified-bacteria; and the archaeal clones could be classified into Crenarchaeota and Thaumarchaeota. Among the major groups, Proteobacteria and Crenarchaeota were dominant in the bacterial and archaeal 16S rRNA gene clone libraries, respectively. The clone sequences obtained in Wuli cold springs were closely related to those from cold habitats, such as snow/ice/soils on high mountains or at high latitude. Especially, the microbial community composition of Wuli Area was more similar to that in Tibetan glaciers than cold environments of other locations. The data presented in this study have impli- cations for a better understanding of microbial diversity in cold springs on the Qinghai-Tibetan Plateau.

关键词： Cold spring Microbial diversity Qinghai-Tibetan Plateau

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BIFs的形成及其铁氧化机制研究进展与展望

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地学前缘 2023年第2期30卷 333-346页

作者：黄柳琴李林鑫蒋宏忱中国地质大学(武汉)生物地质与环境地质国家重点实验室湖北武汉430074

条带状铁建造(banded iron formations, BIFs)是早前寒武纪(3.8~1.8 Ga)缺氧古海洋中大规模Fe(Ⅱ)氧化形成的一类富铁沉积岩,具有典型的硅质层与铁质层互层的条带状或层状结构,形成的铁矿物主要以磁铁矿和赤铁矿为主。BIFs构成了全球规... 详细信息

条带状铁建造(banded iron formations, BIFs)是早前寒武纪(3.8~1.8 Ga)缺氧古海洋中大规模Fe(Ⅱ)氧化形成的一类富铁沉积岩,具有典型的硅质层与铁质层互层的条带状或层状结构,形成的铁矿物主要以磁铁矿和赤铁矿为主。BIFs构成了全球规模最大、储量最多的铁矿类型,具有重大的经济价值。BIFs也是地球环境与生命协同演化的产物,是研究早期地球许多重大演化事件(如大氧化事件)独特的载体。然而,由于早前寒武古海洋环境和沉积条件的独特性,尽管经过了近百年的研究,BIFs成因仍存在许多未解之谜。其中,最关键的科学问题莫过于溶解态Fe(Ⅱ)如何在缺氧古海洋中大量氧化形成特定的铁矿物组合。本文首先概述了BIFs类型、物质组成及来源,以及沉积条件等基本信息;然后从BIFs特殊的沉积环境入手,综述了前人提出的Fe(Ⅱ)氧化机理及存在的一些问题,讨论了微生物驱动下的氮元素生物地球化学循环对Fe(Ⅱ)氧化及BIFs形成的贡献及相关研究进展,最后对BIFs成因研究提出了展望。

关键词：条带状铁建造生物成因铁氧化机制氮循环耦合的铁氧化过程

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微生物厌氧氨氧化耦合铁还原的研究进展及展望

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微生物学报 2023年第6期63卷 2031-2046页

作者：罗珺月冯杰罗阳蒋宏忱黄柳琴中国地质大学(武汉)生物地质与环境地质国家重点实验室湖北武汉430078

厌氧氨氧化耦合铁还原[ammonium oxidation coupled to Fe(Ⅲ) reduction, Feammox]作为一种连接氮循环和铁循环之间的氮代谢途径,在自然界中氨氮转化过程中起到了重要作用。系统研究Feammox驱动的氮铁的生物地球化学耦合过程及其受控因... 详细信息

厌氧氨氧化耦合铁还原[ammonium oxidation coupled to Fe(Ⅲ) reduction, Feammox]作为一种连接氮循环和铁循环之间的氮代谢途径,在自然界中氨氮转化过程中起到了重要作用。系统研究Feammox驱动的氮铁的生物地球化学耦合过程及其受控因素,有助于深入理解地球元素循环的微生物机制,也有助于揭示Feammox在缺氧地质历史时期对古海洋氮库演变和含铁矿物形成过程中的作用。本文从Feammox发展历史、相关微生物、影响因素和潜在地质意义等方面综述了Feammox的研究过程和研究内容,并对Feammox的未来研究方向提出展望。

关键词：铁氨氧化氮循环铁矿物古海洋氮库演变

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Associations of daily sedentary behavior,physical activity,and sleep with irritable bowel syndrome:A prospective analysis of 362,193 participants

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Journal of Sport and Health Science 2024年第1期13卷 72-80页

作者： Xu Gao Sifan Tian Ninghao huang Gang Sun Tao huang Department of Occupational and Environmental Health Sciences School of Public HealthPeking UniversityBeijing 100191China Department of Epidemiology and Biostatistics School of Public HealthPeking UniversityBeijing 100191China Department of Gastroenterology and Hepatology First Medical Center of People's Liberation Army General HospitalBeijing 100853China

Background:Irritable bowel syndrome(IBS)substantially affects quality of life and requires early prevention.This study aimed to elucidate the relationships between IBS and daily behaviors,including sedentary behavior(SB),physical activity(PA),and sleep.In particular,it seeks to identify healthy behaviors to reduce IBS risk,which previous studies have rarely addressed.Methods:Daily behaviors were retrieved from self-reported data of 362,193 eligible UK Biobank participants.Incident cases were determined by self-report or health care data according to RomeⅣcriteria.Results:A total of 345,388 participants were IBS-free at baseline,during a median follow-up of 8.45 years,19,885 incident IBS cases were recorded.When examined individually,SB and shorter(≤7 h/day)or longer(>7 h/day)sleep duration were each positively associated with increased IBS risk,and PA was associated with lower IBS risk.The isotemporal substitution model suggested that replacing SB with other activities could provide further protective effects against IBS risk.Among people sleeping≤7 h/day,replacing 1 h of SB with equivalent light PA,vigorous PA,or sleep was associated with 8.1%(95%confidence interval(95%CI):0.901-0.937),5.8%(95%CI:0.896-0.991),and 9.2%(95%CI:0.885-0.932)reduced IBS risk,respectively.For people sleeping>7 h/day,light and vigorous PA were associated with a 4.8%(95%CI:0.926-0.978)and a 12.0%(95%CI:0.815-0.949)lower IBS risk,respectively.These benefits were mostly independent of genetic risk for IBS.Conclusion:SB and unhealthy sleep duration are risk factors for IBS.A promising way to mitigate IBS risk for individuals sleeping≤7 h/day and for those sleeping>7 h/day appears to be by replacing SB with adequate sleep or vigorous PA,respectively,regardless of the genetic predisposition of IBS.

关键词： Irritable bowel syndrome Isotemporal substitution model Physical activity Sedentary behavior Sleep

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Fast Blood Oxygenation through Hemocompatible Asymmetric Polymer of Intrinsic Microporosity Membranes

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Research 2024年第1期2023卷 261-270页

作者： Xinxi huang Junping huang Pengcheng Su Wanbin Li Guangdong Key Laboratory of Environmental Pollution and Health School of EnvironmentJinan UniversityGuangzhou 511443China

Membrane technology has attracted considerable attention for chemical and medical applications,among others.Artificial organs play important roles in medical science.A membrane oxygenator,also known as artificial lung,can replenish O_(2) and remove CO_(2) of blood to maintain the metabolism of patients with cardiopulmonary failure.However,the membrane,a key component,is subjected to inferior gas transport property,leakage propensity,and insufficient hemocompatibility.In this study,we report efficient blood oxygenation by using an asymmetric nanoporous membrane that is fabricated using the classic nonsolvent-induced phase separation method for polymer of intrinsic microporosity-1.The intrinsic superhydrophobic nanopores and asymmetric configuration endow the membrane with water impermeability and gas ultrapermeability,up to 3,500 and 1,100 gas permeation units for CO_(2) and O_(2),respectively.Moreover,the rational hydrophobic–hydrophilic nature,electronegativity,and smoothness of the surface enable the substantially restricted protein adsorption,platelet adhesion and activation,hemolysis,and thrombosis for the membrane.Importantly,during blood oxygenation,the asymmetric nanoporous membrane shows no thrombus formation and plasma leakage and exhibits fast O_(2) and CO_(2) transport processes with exchange rates of 20 to 60 and 100 to 350 ml m^(−2) min^(−1),respectively,which are 2 to 6 times higher than those of conventional membranes.The concepts reported here offer an alternative route to fabricate high-performance membranes and expand the possibilities of nanoporous materials for membrane-based artificial organs.

关键词： porosity asymmetric Oxygen

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A thermodynamic perspective on electrode poisoning in solid oxide fuel cells

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International Journal of Minerals,Metallurgy and Materials 2024年第6期31卷 1449-1455页

作者： Kevin huang Department of Mechanical Engineering University of South CarolinaColumbiaUSA

A critical challenge to the commercialization of clean and high-efficiency solid oxide fuel cell(SOFC)technology is the insuf-ficient stack lifespan caused by a variety of degradation mechanisms,which are associated with cell components and chemical feedstocks.Cell components related degradation refers to thermal/chemical/electrochemical deterioration of cell materials under operating conditions,whereas the latter regards impurities in feedstocks of oxidant(air)and reductant(fuel).This article provides a thermodynamic perspective on the understanding of the impurities-induced degradation mechanisms in SOFCs.The discussion focuses on using thermodynamic ana-lysis to elucidate poisoning mechanisms in cathodes by impurity species such as Cr,CO_(2),H_(2)O,and SO_(2) and in the anode by species such as S(or H_(2)S),SiO_(2),and P_(2)(or PH_(3)).The author hopes the presented fundamental insights can provide a theoretical foundation for search-ing for better technical solutions to address the critical degradation challenges.

关键词： impurities air fuel reaction activity

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In situ direct reprogramming of astrocytes to neurons via polypyrimidine tract-binding protein 1 knockdown in a mouse model of ischemic stroke

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Neural Regeneration Research 2024年第10期19卷 2240-2248页

作者： Meng Yuan Yao Tang Tianwen huang Lining Ke En huang Key Laboratory of Brain Aging and Neurodegenerative Diseases of Fujian Province Fujian Medical UniversityFuzhouFujian ProvinceChina Department of Human Anatomy School of Basic Medical SciencesFujian Medical UniversityFuzhouFujian ProvinceChina Scientific Research Center School of Basic Medical SciencesFujian Medical UniversityFuzhouFujian ProvinceChina Department of Neurology Fujian Medical University Union HospitalFuzhouFujian ProvinceChina Fujian Key Laboratory of Vascular Aging Fujian Medical UniversityFuzhouFujian ProvinceChina

In situ direct reprogramming technology can directly convert endogenous glial cells into functional neurons in vivo for central nervous system repair. Polypyrimidine tract-binding protein 1(PTB) knockdown has been shown to reprogram astrocytes to functional neurons in situ. In this study, we used AAV-PHP.e B-GFAP-sh PTB to knockdown PTB in a mouse model of ischemic stroke induced by endothelin-1, and investigated the effects of GFAP-sh PTB-mediated direct reprogramming to neurons. Our results showed that in the mouse model of ischemic stroke, PTB knockdown effectively reprogrammed GFAP-positive cells to neurons in ischemic foci, restored neural tissue structure, reduced inflammatory response, and improved behavioral function. These findings validate the effectiveness of in situ transdifferentiation of astrocytes, and suggest that the approach may be a promising strategy for stroke treatment.

关键词： astrocyte in situ direct reprogramming ischemic stroke miR-30 based shRNA neuron polypyrimidine tract-binding protein 1 transdifferentiation

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