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The genome-wide meiotic recombination landscape in ciliates and its implications for crossover regulation and genome evolution

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Journal of Genetics and Genomics 2024年第3期51卷 302-312页

作者： Lu Fu Chen Gu Kazufumi Mochizuki jie xiong Wei Miao Guangying Wang Key Laboratory of Aquatic Biodiversity and Conservation Institute of HydrobiologyChinese Academy of SciencesWuhanHubei 430072China University of Chinese Academy of Sciences Beijing 100049China Institute of Human Genetics(IGH) CNRSUniversity of Montpellier34396 MontpellierFrance Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture Chinese Academy of SciencesWuhanHubei 430072China Key Laboratory of Lake and Watershed Science for Water Security Chinese Academy of SciencesNanjingJiangsu 210008China

Meiotic recombination is essential for sexual reproduction and its regulation has been extensively studied in many taxa.However,genome-wide recombination landscape has not been reported in ciliates and it remains unknown how it is affected by the unique features of ciliates:the synaptonemal complex(SC)-independent meiosis and the nuclear dimorphism.Here,we show the recombination landscape in the model ciliate Tetrahymena thermophila by analyzing single-nucleotide polymorphism datasets from 38 hybrid progeny.We detect 1021 crossover(CO)events(35.8 per meiosis),corresponding to an overall CO rate of 9.9 cM/Mb.However,gene conversion by non-crossover is rare(1.03 per meiosis)and not biased towards G or C alleles.Consistent with the reported roles of SC in CO interference,we find no obvious sign of CO interference.CO tends to occur within germ-soma common genomic regions and many of the 44 identified CO hotspots localize at the centromeric or subtelomeric regions.Gene ontology analyses show that CO hotspots are strongly associated with genes responding to environmental changes.We discuss these results with respect to how nuclear dimorphism has potentially driven the formation of the observed recombination landscape to facilitate environmental adaptation and the sharing of machinery among meiotic and somatic recombination.

关键词： Meiotic recombination Hotspot Crossover interference Adaptive evolution

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Anti-metabolic agent pegaspargase plus PD-1 antibody sintilimab for first-line treatment in advanced natural killer T cell lymphoma

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Signal Transduction and Targeted Therapy 2024年第4期9卷 1665-1674页

作者： jie xiong Shu Cheng Xiao Gao Shan-He Yu Yu-Ting Dai Xin-Yun Huang Hui-Juan Zhong Chao-Fu Wang Hong-Mei Yi Hao Zhang Wei-Guo Cao Rong Li Wei Tang Yan Zhao Peng-Peng Xu Li Wang Wei-Li Zhao Shanghai Institute of Hematology State Key Laboratory of Medical GenomicsNational Research Center for Translational Medicine at ShanghaiRuijin Hospital Affiliated to Shanghai Jiao Tong University School of MedicineShanghaiChina Department of Nuclear Medicine Shanghai Ruijin HospitalShanghai Jiao Tong University School of MedicineShanghaiChina Department of Pathology Shanghai Ruijin HospitalShanghai Jiao Tong University School of MedicineShanghaiChina Department of Otolaryngology Shanghai Rujin HospitalShanghai Jiao Tong University School of MedicineShanghaiChina Department of Radiation Shanghai Ruijin HospitalShanghai Jiao Tong University School of MedicineShanghaiChina Department of Hematology Navy Medical Center of PLAShanghaiChina Pole de Recherches Sino-Francais en Science du Vivant et Genomique Laboratory of Molecular PathologyShanghaiChina

Natural killer T cell lymphoma(NKTCL)is highly aggressive,with advanced stage patients poorly responding to intensive chemotherapy.To explore effective and safe treatment for newly diagnosed advanced stage NKTCL,we conducted a phase ll study of anti-metabolic agent pegaspargase plus PD-1 antibody sintilimab(NCT04096690).Twenty-two patients with a median age of 51 years(range,24-74)were enrolled and treated with induction treatment of pegaspargase 2500 IU/m2 intramuscularly on day 1 and sintilimab 200 mg intravenously on day 2 for 6 cycles of 21 days,followed by maintenance treatment of sintilimab 200 mg for 28 cycles of 21 days.The complete response and overall response rate after induction treatment were 59%(95%Cl,43-79%)and 68%(95%Cl,47-84%),respectively.With a median follow-up of 30 months,the 2 year progression-free and overall survival rates were 68%(95%Cl,45-83%)and 86%(95%Cl,63-95%),respectively.The most frequently grade 3/4 adverse events were neutropenia(32%,n=7)and hypofibrinogenemia(18%,n=4),which were manageable and led to no discontinuation of treatment.Tumor proportion score of PD-L1,peripheral blood high-density lipoprotein cholesterol,and apolipoprotein A-l correlated with good response,while PD-1 on tumor infiltrating lymphocytes and peripheral Treg cells with poor response to pegaspargase plus sintilimab treatment.In conclusion,the chemo-free regimen pegaspargase plus sintilimab was effective and safe in newly diagnosed,advanced stage NKTCL.Dysregulated lipid profle and immunosuppressive signature contributed to treatment resistance,providing an alternative therapeutic approach dual targeting fatty acid metabolism and CTLA-4 in NKTCL.

关键词： killer metabolism lymphoma

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Synthetic host-guest pairs as novel bioorthogonal tools for pre-targeting

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Chinese Chemical Letters 2024年第2期35卷 44-56页

作者： Yan-Long Ma Shi Yan xiong-jie Xu Hua Cao Ruibing Wang School of Chemistry and Chemical Engineering and Guangdong Cosmetics Engineering & Technology Research Center Guangdong Pharmaceutical UniversityZhongshan 528458China State Key Laboratory of Quality Research in Chinese Medicine and the Institute of Chinese Medical ScienceUniversity of MacaoMacao 999078China

Due to its simplicity, high efficiency, and chemo-selectivity, bioorthogonal chemistry has shown a great application potential in pre-targeting.Currently, four bioorthogonal pairs as targeting tools, including (strept)avidin/biotin, antibody/antigen, oligonucleotide hybridization and IEDDA tools, have been developed and applied in targeted delivery.Nevertheless, all of these tools still suffer from some limitations, such as difficult modification, biochemical fragility and larger molecular weight for biological association tools, as well as chemical instability for IEDDA tools.Synthetic host-guest pairs with relatively small molecular sizes not only possess strong chemical stability, but also have the features of fast conjugation rate, tunable binding affinity , easy modification, and high chemo-selectivity.Consequently, they can be used as a novel non-covalent bioorthogonal tool for pre-targeting.In order to further promote the development of host-guest pairs as novel bioorthogonal tools for pre-targeted delivery, we firstly calculate their conversion rate to make researcher aware of their unique advantages;next, we summarize the recent research progress in this area.The future perspectives and limitations of these unique tools will be discussed.This review will provide a systemic overview of the development of synthetic host-guest pairs as novel bioorthogonal tools for pre-targeting, and may serve as a “go for” resort for researchers who are interested in searching for new synthetic tools to improve pre-targeting.

关键词： Bioorthogonal chemistry Synthetic host-guest pairs Pre-targeting Molecular recognition Biomedical applications

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Data-driven glass-forming ability criterion for bulk amorphous metals with data augmentation

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Journal of Materials Science & Technology 2022年第26期121卷 99-104页

作者： jie xiong Tong-Yi Zhang School of Materials Science and Engineering Harbin Institute of TechnologyShenzhen 518000China Hong Kong University of Science and Technology(Guangzhou) Guangzhou 511400China Material Genome Institute Shanghai UniversityShanghai 200444China

A data augmentation technique is employed in the current work on a training dataset of 610 bulk metallic glasses(BMGs),which are randomly selected from 762 collected data.An ensemble machine learning(ML)model is developed on augmented training dataset and tested by the rest 152 data.The result shows that ML model has the ability to predict the maximal diameter Dmaxof BMGs more accurate than all reported ML models.In addition,the novel ML model gives the glass forming ability(GFA)rules:average atomic radius ranging from 140 pm to 165 pm,the value of TT/(T-T)(T-T)being higher than 2.5,the entropy of mixing being higher than 10 J/K/mol,and the enthalpy of mixing ranging from-32 k J/mol to-26 k J/mol.ML model is interpretative,thereby deepening the understanding of GFA.

关键词： Materials informatics Glass-forming ability Data augmentation Model interpretation Meta-ensemble model

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Local quantum Fisher information and quantum correlation in the mixed-spin Heisenberg XXZ chain

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Frontiers of physics 2024年第2期19卷 235-245页

作者： Peng-Fei Wei Qi Luo Huang-Qiu-Chen Wang Shao-jie xiong Bo Liu Zhe Sun School of Physics Hangzhou Normal UniversityHangzhou 310036China Zhejiang Institute of Modern Physics and School of Physics Zhejiang UniversityHangzhou 310027China School of Information and Electrical Engineering Hangzhou City UniversityHangzhou 310015China Zhejiang Provincial Key Laboratory of Urban Wetlands and Regional Change Hangzhou 311121China

We study the local quantum Fisher information(LQFI)in the mixed-spin Heisenberg XXZ chain.Both the maximal and minimal LQFI are studied and the former is essential to determine the accuracy of the quantum parameter estimation,the latter can be well used to characterize the discord-type quantum correlations.We investigate the effects of the temperature and the anisotropy parameter on the maximal LQFI and thus on the accuracy of the parameter estimation.Then we make use of the minimal LQFI to study the discord-type correlations of different site pairs.Different dimensions of the subsystems cause different values of the minimal LQFI which reflects the asymmetry of the discord-type correlation.In addition,the site pairs at different positions of the spin chains have different minimal LQFI,which reveals the influence of the surrounding spins on the bipartite quantum correlation.Our results show that the LQFI obtained through a simple calculation process provides a convenient way to investigate the discord-type correlation in high-dimensional systems.

关键词： local quantum Fisher information quantum correlation mixed-spin Heisenberg XXZ chain

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Strength-toughness improvement of 13Cr4NiMo martensitic stainless steel with thermal cyclic heat treatment

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Journal of Iron and Steel Research(International) 2023年第8期30卷 1499-1510页

作者： jie xiong Yao-lin Tong jie-long Peng Sheng-hua Zhang State Key Laboratory of Featured Metal Materials and Life-Cycle Safety for Composite Structures MOE Key Laboratory of New Processing Technology for Nonferrous Metals and Materialsand School of ResourcesEnvironment and MaterialsGuangxi UniversityNanning 530004GuangxiChina Key Laboratory of High Performance Structural Materials and Thermo-Surface Processing Education Department of Guangxi Zhuang Autonomous RegionGuangxi UniversityNanning 530004GuangxiChina

To improve the strength-toughness of 13Cr4NiMo martensitic stainless steel(13-4MSS),a thermal cyclic heat treatment(TCHT)combined with the advantage of tempering was proposed.The microstructures were characterized by scanning electron microscopy,X-ray diffraction and electron backscattered diffraction,and the mechanical behaviors in terms of tensile properties and impact toughness were analyzed in correlation with microstructural evolution.It was found that grains and the martensitic matrix were refined by TCHT through the cyclic quenching transformation and austenite recrystallization,which was conducive to more nucleation quantity of reversed austenite during tempering.Two-sphericalcap nucleation model was used to explain the effect of refined grains of TCHT on the nucleation of reversed austenite.Grain refinement by TCHT improved the brittle fracture stress to reduce the ductile-brittle transition temperature and thus improved the cryogenic impact toughness of 13-4MSS.Reversed austenite distributed at the martensitic lath boundary enhances the crack arrest performance and increases the britle fracture stress.It is concluded that reasonable TCHT plus tempering process significantly improves the strength-toughness of 13-4MSS,reflecting the comprehensive effect of grain refinement and reversed austenite.

关键词： Strength-Toughness 13Cr4NiMo martensitic stainless steel Thermal cyclic heat treatment Grain refinement Reversed austenite

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Stereoselective Synthesis of Nontethered trans-4 Bis(aziridino)[60]fullerene Derivatives

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Chinese Journal of Chemistry 2023年第18期41卷 2282-2288页

作者： jie xiong Shuang Feng Rufang Peng Bo Jin State Key Laboratory of Environment-friendly Energy Materials Southwest University of Science and TechnologyMianyangSichuan 621010China

Comprehensive Summary,The stereoselective preparation of fullerene bis-adducts through nontethered methods remains difficult due to the significant amount of regioisomers produced.The trans-4 aziridino[60]fullerenes,C_(60)(NC_(6)H_(4)R)n(n=1 or 2,R=OMe,OEt,OBu),were selectively synthesized even without a catalyst by reacting octabromofullerene with the corresponding aniline.Nuclear magnetic resonance spectroscopy,UV-vis spectroscopy,and X-ray structural analysis provided convincing characterization of the compounds.A possible reaction process was proposed to clarify the synthesis of highly regioselective trans-4-bisaziridino[60]fullerenes.The possible application of these aziridino[60]fullerene derivatives as propellant stabilizers was also explored.

关键词： Fullerene Regioselectivity Mechanism Nitrocellulose Stability

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Could more innovation output bring better financial performance?The role of financial constraints

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Financial Innovation 2022年第1期8卷 115-140页

作者： Benlu Hai Ximing Yin jie xiong Jin Chen Henan Normal University XinxiangChina Beijing Institute of Technology 5 South Zhongguancun StreetHaidian DistrictBeijing 100081China ESSCA School of Management 1 Rue Joseph LakanalAngers 49000France Tsinghua University BeijingChina

Innovation scholars highlight the economic benefits to firms,while research findings on the relationship between innovation output and economic returns remain mixed.In this study,we develop the profiting from innovation(PFI)framework and address the crucial role of financial constraints in the relationship between innovation output and financial performance.We argue that the liability of newness differentiates firms’financial performance during the commercialization of innovation,leading to a U-shaped relationship between firms’innovation output and financial performance.We further document the moderating impact of individual financial constraints(IFC)and market-based financial constraints(MFC)on this curvilinear relationship.Empirical tests based on the 142,972 firm-year observations of the multi-source dataset of Chinese manufacturing firms from 1999–2009 support our hypotheses.The additional analysis shows that non-state-owned enterprises and small and medium enterprises benefit more from the synergistic effect of reductions of IFC and MFC than state-owned enterprises and large firms.Our study enriches the literature of the PFI framework by uncovering the mechanism between innovation output and economic returns where financial constraints play an essential role.To the best of our knowledge,we are among the first to investigate the processes and mechanisms between innovation output and financial performance,generating novel insights for business practitioners and policymakers.

关键词： Innovation output Financial performance Individual financial constraints Market-based financial constraints PFI framework

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Gaussian process regressions on hot deformation behaviors of FGH98 nickel-based powder superalloy

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Journal of Materials Science & Technology 2023年第15期146卷 177-185页

作者： jie xiong Jian-Chao He Xue-Song Leng Tong-Yi Zhang School of Materials Science and Engineering Harbin Institute of TechnologyShenzhen 518055China Institute of Special Environment Physical Sciences Harbin Institute of TechnologyShenzhen 518055China Hong Kong University of Science and Technology(Guangzhou) Guangzhou 511400China

The hot deformation behaviors of FGH98 nickel-based powder superalloy were experimentally investigated and theoretically analyzed by Arrhenius models and machine learning(ML).Hot compression tests were conducted with a Gleeble-3800 thermo-mechanical simulation machine on the FGH98 superalloy at strain rates of 0.001–1 s–1 and temperatures of 1025–1175℃.The peak stresses under different deformation conditions were analyzed via the Sellars model and an ML-inspired Gaussian process regression(GPR)model.The prediction of the GPR model outperformed that from the Sellars model.In addition,the stress-strain responses were predicted by the GPR model and tested by experimentally measured stress-strain curves.The results indicate that the developed GPR model has great power with wide generalization capability in the prediction of hot deformation behaviors of FGH98 superalloy,as evidenced by the R2 value higher than 0.99 on the test dataset.

关键词： Hot compressive deformation Nickel-based powder superalloy Activation energy Gaussian process regression

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Synthesis,crystallographic characterization,and potential application of fullerene anisole derivatives as nitrocellulose stabilizer

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Defence Technology（防务技术） 2023年第6期24卷 164-172页

作者： jie xiong Bo Jin Xue-mei Yu Ling Liao Ru-fang Peng State Key Laboratory of Environment-friendly Energy Materials School of Materials Science and EngineeringSouthwest University of Science and TechnologySichuanMianyang621010China

A series of fullerene anisole derivative stabilizers was synthesized by nucleophilic substitution reaction using hexachlorofullerene and benzyl alcohol as raw materials to extend the service duration of nitrocellulose(NC)-based propellants.Single-crystal X-ray diffraction,nuclear magnetic resonance,highresolution mass spectrometry,Fourier transform infrared(FT-IR)spectroscopy,and UV-Vis spectroscopy were used to characterize the structures of the synthesized fullerene anisole derivative stabilizers.Methyl violet,differential scanning calorimetry test,isothermal weight loss,vacuum stability test,and adiabatic accelerated test were used to study their compatibility with NC and their ability to stabilize NC.The results show that the designed and synthesized novel fullerene anisole derivative stabilizer has good compatibility with NC,and their overall stabilizing effects on NC are better than those of the traditional stabilizers,diphenylamine(DPA),and N,N’-dimethyl-N,N’-diphenylurea(C2).The stabilizing effects was ranked as:3b>2d>2a>2c>C2>2b>DPA>NC.In addition,FT-IR analysis and electron spin resonance spectroscopy were applied to explore the stability mechanism of fullerene-based stabilizers to NC.The results reveal that the new fullerene stabilizer can adsorb and effectively eliminate the nitrogen oxide free radicals generated by NC degradation;therefore,it can forbid the autocatalytic degradation of NC and stabilize NC.

关键词： Fullerene Nitrocellulose Stability Propellant Mechanism

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