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Comparative Study of Gut microbiota in Breast Cancer Patients versus Controls in Abidjan, Côte d’Ivoire

Advances in microbiology 2024年第9期14卷 405-415页

作者： m’Bengue Gbonon Valérie Gnahore Djeda Franck Kouadio Kouamé Assohoun Stanislas Coulibaly Safiatou Diplo Flore Bernadette Sekongo mamadou Osseni Akandji Afran Sidje Arlette N’Guessan jean-David Dosso mireille molecular Genetics Platform Institut Pasteur de Cte dIvoire Abidjan Cte dIvoire Laboratory of Biology and Health UFR Biosciences Flix Houphout Boigny University Abidjan Cte dIvoire Department of Environment and Health Institut Pasteur de Cte dIvoire Abidjan Cte dIvoire Bioinformatics & Computational Biology Group National Computing Center of Cte dIvoire Flix Houphout Boigny University Bingerville Cte dIvoire National Blood Transfusion Center Abidjan Cte dIvoire Oncology Department Treichville University Hospital Abidjan Cte dIvoire

Context: The gut microbiota represents a complex ecosystem encompassing all unicellular microorganisms residing in the digestive tract, primarily bacteria, fungi, archaea, and even viruses. The relationship between the host and the microbiota is symbiotic: bacteria benefit from a stable environment, while the host gains numerous capabilities in terms of digestion, metabolism, nutrition, and immunity. However, numerous studies suggest that the gut microbiota plays a crucial role in various non-communicable diseases, including obesity, chronic inflammatory bowel diseases, allergic and immune disorders, behavioral disorders, and even certain cancers. The objective of our study was to characterize the gut microbiota of a group of breast cancer patients by comparing it to that of control subjects in Côte d’Ivoire, using a metagenomic approach. method: A case-control study was conducted from may 2020 to September 2023. A total of 85 women (39 cases and 46 controls) were recruited, and stool samples were collected from both breast cancer patients and healthy women. Among these, ten (10) samples from patients and ten (10) samples from healthy women were randomly selected for the study of the gut microbiota. The gut microbiota was characterized by sequencing the V4 region of 16S rRNA using metagenomic NGS technology, and bioinformatic analysis was performed using the mothur pipeline. Results: In women with breast cancer, we observed a reduction in the relative abundance of the phyla Firmicutes and Bacteroidetes, as well as an increase in the phyla Actinobacteria and Verrucomicrobia. Additionally, their microbiota exhibited lower Chao1 and Sobs diversities compared to the control women (p molecular variance analysis (AmOVA) revealed a significant difference between the case and control groups (p major phyla within the gut microbiota of cases compared to healthy controls. It wil

关键词： Gut microbiota 16S metagenomic Sequencing Breast Cancer Dysbiosis

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Dissemination of Resistance Integrons and Genes Coding for Blse and Cabapenemases in the Urban Drainage Network in Cote d’Ivoire

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Advances in microbiology 2024年第5期14卷 268-286页

作者： Coulibaly Kalpy Julien Diaby Aboubakar Sidik Vakou N’dri Sabine m’bengue Gbonon Valérie Carole Claon jean Stephane Yao Kouamé Eric Gnali Gbohounou Fabrice Yéo Yéfougnini Bagré Issa Djaman Allico Joseph Dosso mireille Pasteur Institute of Ivory Coast Abidjan C&#244te d&#8217Ivoire Fé lix Houphou&#235t-Boigny University Abidjan C&#244te d&#8217Ivoire

Antibiotic resistance has become a major threat to human health worldwide. Environment, particularly the water environment, has long been overlooked as a player in the antibiotic resistance cycle, although its role remains unclear. These can provide an ideal setting for the acquisition and dissemination of antibiotic resistance, as they are frequently affected by anthropogenic activities. The objective of this study was to establish a diffusion map of resistance integrons used as genetic markers of resistance associated with antibiotic resistance conferring genes (ARGs). Total DNA extracts from non-cultivable bacterial communities were used for the analyses. These communities were obtained from wastewater samples from 14 sites upstream and downstream of drainage channels or effluents in the cities of Abidjan, Bouaké, and Yamoussoukro. The results obtained correspond to the number of positives among the treated samples (n = 39). Among the genetic markers of dissemination, class 1 integrons were the most evident in 94.8% of samples in Abidjan (93.3%), Bouaké (100%) and Yamoussoukro (91.6%). Class 2 integrons and class 3 integrons were found respectively in 41% and 51% of all samples. Genes coding for β-lactamases and blaTEm was identified in almost all samples at a rate of 97.4%. A co-presence of the three genes blaTEm, blaSHV and blaCTX-m is also remarkable in the sites of the city of Yamoussoukro. Among the genes coding for carbapenemases, only blaKPC 17.94%, blaNDm 30.76% and blaOXA48 38.46% were detected in the samples.

关键词： Antibiotic Resistance Wastewater Resistance Integrons (RIs) Resistance Genes

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Pit-and trench-forming osteoclasts:a distinction that matters

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Bone Research 2015年第4期3卷 199-209页

作者： Ditte mH merrild Dinisha C Pirapaharan Christina m Andreasen Per Kjxrsgaard-Andersen Anas mJ mùller ming Ding jean-m.rie delaissé Kent Sùe Department of Clinical Cell Biology Vejle Hospital/Lillebaelt HospitalInstitute of Regional Health ResearchUniversity of Southern Denmark Orthopaedic Research Laboratory Department of Orthopedic Surgery and TraumatologyOdense University HospitalUniversity of Southern Denmark Department of Orthopedic Surgery Vejle Hospital/Lillebaelt Hospital

Osteoclasts（OCs）seeded on bone slices either drill round pits or dig long *** pits correspond to intermittent resorption,trenches correspond to continuous and faster resorption and require a distinct assembly of the resorption *** is unknown whether the distinction between pits and trenches has any biological *** OCs prepared from different blood donors,we found that female OCs achieved increased resorption mainly through pit formation,whereas male OCs did so through trench *** formation went along with high collagenolytic activity and high cathepsin K（CatK）expression,thereby allowing deeper demineralization.A specific CatK inhibitor abrogated the generation of trenches,while still allowing the generation of *** obtained from bone marrow were more prone to generate trenches than those obtained from *** electron microscopy of bone surfaces eroded in vivo showed trenches and pits of similar size as those made by OCs in *** conclude that the distinction between trench-and pit-forming OCs is relevant to the differences among OCs from different skeletal sites,different individuals,including gender,and results from differences in colIagenolytic *** indicates a biological relevance and highlights the importance of discriminating between pits and trenches when assessing resorption.

关键词： trench cathepsin collagen faster prone assembly highlights thereby correspond apparatus

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Increasing the effectiveness of intracerebral injections in adult and neonatal mice: a neurosurgical point of view

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Neuroscience Bulletin 2015年第6期31卷 685-696页

作者： Bertrand mathon m.rie Nassar jean Simonnet Caroline Le Duigou Stéphane Clemenceau Richard miles Desdemona Fricker Department of Neurosurgery Groupe Hospitalier Universitaire de La Pitié-SalpêtrièreAPHPF-75013ParisFrance Inserm U 1127F-75013ParisFrance CNRS UMR 7225F-75013ParisFrance Sorbonne Universités UPMC Univ Paris 06UMR S 1127F-75013ParisFrance Institut du Cerveau et de la moelle épinière ICMF-75013ParisFrance

Intracerebral injections of tracers or viral constructs in rodents are now commonly used in the neurosciences and must be executed perfectly. The purpose of this article is to update existing protocols for intracerebral injections in adult and neonatal mice. Our procedure for stereotaxic injections in adult mice allows the investigator to improve the effectiveness and safety, and save time. Furthermore, for the first time, we describe a two-handed procedure for intracerebral injections in neonatal mice that can be performed by a single operator in a very short time. Our technique using the stereotaxic arm allows a higher precision than freehand techniques previously described. Stereotaxic injections in adult mice can be performed in 20 min and have 〉90% efficacy in targeting the injection site. Injections in neonatal mice can be performed in 5 min. Efficacy depends on the difficulty of precisely localizing the injection sites, due to the small size of the animal. We describe an innovative, effortless, and reproducible surgical protocol for intracerebral injections in adult and neonatal mice.

关键词： rodents surgery neurosciencesstereotaxic injection newborn mice neonatal brain

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Dissemination of Resistance Integrons and Genes Coding for Blse and Cabapenemases in the Urban Drainage Network in Cote d’Ivoire

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Advances in microbiology（微生物学） 2024年第5期 268页

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Folfirinox in elderly patients with pancreatic or colorectal cancer-tolerance and efficacy

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World Journal of Gastroenterology 2016年第42期22卷 9378-9386页

作者： jean-Florian Guion-Dusserre Aurélie Bertaut Fran?ois Ghiringhelli Julie Vincent Valérie Quipourt Sophie marilier Zoé Tharin Leila Bengrine-Lefevre Department of medical Oncology Centre Georges-Fran?ois Leclerc Institut National de la Santé et de la Recherche médicale University of Burgundy

AIm To study the tolerance and the efficiency of FOLFIRINOX in elderly patients diagnosed with colorectal or pancreatic *** This retrospective study included elderly patients aged over 70 years of age treated at Georges-Francois Leclerc Center by FOLFIRINOX for histological proved colorectal or pancreatic cancer between January 2009 and January 2015. Chemotheapy regimen consisted of oxaliplatin(85 mg/m2 in over 120 min) followed by leucovorin(400 mg/m2 in over 120 min), with the addition, after 30 min of irinotecan(180 mg/m2 in over 90 min) then 5 fluorouracil(5FU)(400 mg/m2 administred intravenous bolus), followed by 5FU(2400 mg/m2 intraveinous infusion over 46 h) repeated every 2 wk. Geriatric parameters were recorded at the beginning. Toxicities were evaluated with the Common Terminology Criteria for Adverse Events 4.03. Tumor response was evaluated by CT scan. Treatment continued until disease progression, unacceptable toxicities or patient *** Fifty-two patients aged from 70 to 87 years were treated by FOLFIRINOX, 34 had colorectal cancer and 18 had pancreatic cancer. most of them were in good general condition, 82.7% had a 0-1 performance status and 61.5% had a Charlson Comorbidity Index most frequent severe toxicities were neutropenia(17 patients, n = 32.7%) and diarrhea(35 patients n = 67.3%); 10 of the case of neutropenia and 5 of diarrhea registered a grade 4 toxicity. Thirty-nine patients(75%) initially received an adapted dose of chemotherapy. The dosage was adjusted for 26% of patients during the course of treatment. Tumor response evaluated by RECIST criteria showed a controlled disease for 25 patients(48.1%), a stable disease for 13 and a partial response for 12 patients. Time under treatment was higher for colorectal cancer with a median time of 2.44 mo(95%CI: 1.61-3.25). Overall survival was 43.88 mo for colorectal cancer and 12.51 mo for pancreatic cancer. In univariate or multivariate analysis, none of geriatric pa

关键词： Elderly patients Feasibility treatment Pancreatic cancer Colorectal cancer FOLFIRINOX

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Comparison of the Bacterial microbiota in a Bale of Collected Cardboard Determined by 454 Pyrosequencing and Clone Library

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Advances in microbiology 2014年第12期4卷 754-760页

作者： Valérie Lalande Simon Barnabé jean-Charles Coté Département de Biologie médicale Université du Québec à Trois-RivièresTrois-RivièresCanada Agriculture and Agri-Food Canada Research and Development CentreSaint-Jean-sur-RichelieuCanada Département de Chimie Biochimie et PhysiqueUniversité du Québec à Trois-RivièresTrois-RivièresCanada

Biofouling, the accumulation of microorganisms, is a major problem in paper mills processing paper and cardboard. This leads to the production of lower quality recycled products. Several studies have focused on the microbial content in the paper mill and the final products. Our aim was to determine the microbial biota in a bale of collected cardboard prior to entering the paper mill. Total genomic DNA was isolated and analyzed using two different methods for comparison purposes: 454 pyrosequencing and clone library. A total of 3268 V6-V8 454 pyrosequencing reads and 322 cloned V6-V8 16S rRNA nucleotide sequences were obtained. Both methods showed the presence of three major bacterial genera: Bacillus, Solibacillus and Paenibacillus, all members of the spore-forming phylum Firmicutes. Pyrosequencing, however, revealed a richer and more diverse bacterial community than clone library. It showed the presence of additional minor Firmicute genera and of a small number of Proteobacteria. The sorting at the recycling plant, the storing, and the processing at the paper mill, the end uses, will all contribute to the bacterial microbiota present in a bale of collected cardboard as revealed here.

关键词： 454 Pyrosequencing Bacterial microbiota Cardboard Clone Library Paper mill

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Aging and menopause reprogram osteoclast precursors for aggressive bone resorption

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Bone Research 2020年第3期8卷 333-342页

作者： Anais m.rie Julie moller jean-m.rie delaisse Jacob Bastholm Olesen Jonna Skov madsen Luisa matos Canto Troels Bechmann Silvia Regina Rogatto Kent Soe Clinical Cell Biology Lillebaelt HospitalUniversity Hospital of Southern Denmark7100 VejleDenmark Department of Regional Health Research University of Southern Denmark5230 Odense MDenmark Department of Clinical Biochemistry and Immunology Lillebaelt HospitalUniversity Hospital of Southern Denmark7100 VejleDenmark Clinical Cell Biology Department of PathologyOdense University Hospital5000 Odense CDenmark Department of Clinical Research University of Southern Denmark5230 Odense MDenmark Department of molecular medicine University of Southern Denmark5230 Odense MDenmark Department of Clinical Genetics Lillebaelt HospitalUniversity Hospital of Southern Denmark7100 VejleDenmark Department of Oncology Lillebaelt HospitalUniversity Hospital of Southern Denmark7100 VejleDenmark OPEN Odense Patient data Explorative NetworkOdense University Hospital5000 Odense CDenmark

Women gradually lose bone from the age of〜35 years,but around menopause,the rate of bone loss escalates due to increasing bone resorption and decreasing bone formation levels,rendering these individuals more prone to developing *** increased osteoclast activity has been linked to a reduced estrogen level and other hormonal ***,it is unclear whether intrinsic changes in osteoclast precursors around menopause can also explain the increased osteoclast ***,we set up a protocol in which CD14f blood monocytes were isolated from 49 female donors(40-66 years old).Cells were differentiated into osteoclasts,and data on differentiation and resorption activity were *** multiple linear regression analyses combining in vitro and in vivo data,we found the following:(1)age and menopausal status correlate with aggressive osteoclastic bone resorption in vitro;(2)the type I procollagen N-terminal propeptide level in vivo inversely correlates with osteoclast resorption activity in vitro;(3)the protein level of mature cathepsin K in osteoclasts in vitro increases with age and menopause;and(4)the promoter of the gene encoding the dendritic cell-specific transmembrane protein is less methylated with *** conclude that monocytes are"reprogrammed"in vivo,allowing them to"remember"age,the menopausal status,and the bone formation status in vitro,resulting in more aggressive *** discovery suggests that this may be mediated through DNA *** suggest that this may have clinical implications and could contribute to understanding individual differences in age-and menopause-induced bone loss.

关键词： osteoclast menopause osteoporosis

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Poly（ADP-ribose） Polymerases （PARPs） as Potential Drug Targets

Poly（ADP-ribose） Polymerases （PARPs） as Potential Drug T...

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第十五届国际药理学大会

作者： Valérie Schreiber Francoise Dantzer jean-Christophe Amé Josiane ménissierdemurcia Gilbertde murcia Département Intégrité du génome UMR 7175 CNRS-ULP ESBS Boulevard Sébastien Brant BP 10413 67412 ILLKIRCH France Département Intégrité du génome UMR 7175 CNRS-ULP ESBS Boulevard Sébastien Brant BP 10413 67412 ILLKIRCH France Département Intégrité du génome UMR 7175 CNRS-ULP ESBS Boulevard Sébastien Brant BP 10413 67412 ILLKIRCH France Département Intégrité du génome UMR 7175 CNRS-ULP ESBS Boulevard Sébastien Brant BP 10413 67412 ILLKIRCH France Département Intégrité du génome UMR 7175 CNRS-ULP ESBS Boulevard Sébastien Brant BP 10413 67412 ILLKIRCH France

＜正＞ Poly（ ADP-ribosyl） ation is an immediate DNA damage-dependent post-transla-tional modification of histones and other nuclear proteins that contributes to the survival of injured proliferating cells. Poly（ ADP-ribose） polymerases （PARPs） now constitute a large family of 17 proteins, encoded by different genes and displaying a conserved catalytic domain. PARP-1 （113 kDa）. the founding member, and PARP-2 （62 kDa） are so far the sole enzymes whose catalytic activity is immediately stimulated by DNA strand-breaks. A large repertoire of sequences encoding novel PARPs now extend considerably the field of poly（ ADP-ribosyl ）a-tion reactions to various aspects of the cell biology including cell proliferation and cell death. Some of these new members interact with each other, share common partners and common subcellular localizations suggesting possible fine tuning in the regulation of this posttranslational modification of proteins. This review summarizes our present knowledge of this emerging superfamily that might ultimately improve pharmacological strategies to enhance both antitumor efficacy as well as the treatment of a number of inflammatory and neurodegenerative disorders.

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High-throughput multiplexed fluorescence-activated droplet sorting

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microsystems & Nanoengineering 2018年第1期4卷 95-104页

作者： Ouriel Caen Simon Schütz m.S.Suryateja Jammalamadaka Jérémy Vrignon Philippe Nizard Tobias m.Schneider jean-Christophe Baret Valérie Taly INSERm UmR-S1147 CNRS SNC5014Paris Descartes UniversityEquipe labellisée Ligue Nationale contre le cancerParisFrance Emergent Complexity in Physical Systems Laboratory(ECPS) Ecole Polytechnique Fédérale de Lausanne1015 LausanneSwitzerland CNRS University BordeauxCRPPUMR 5031115 Avenue Schweitzer33600 PessacFrance

Fluorescence-activated droplet sorting(FADS)is one of the most important features provided by droplet-based ***,to date,it does not allow to compete with the high-throughput multiplexed sorting capabilities offered by flow ***,we demonstrate the use of a dielectrophoretic-based FADS,allowing to sort up to five different droplet populations *** system provides means to select droplets of different phenotypes in a single experimental run to separate initially heterogeneous *** experimental results are rationalized with the help of a numerical model of the actuation of droplets in electric fields providing guidelines for the prediction of sorting designs for upscaled or downscaled microsystems.

关键词： rational initially sorting

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