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Angiosperm phylogeny inferred from sequences of four mitochondrial genes

Journal of Systematics and Evolution 2010年第6期48卷 391-425页

作者： Tory A.hendry Joseph W.BROWN Geordan T.HUDSON Department of Ecology and Evolutionary Biology University of Michigan

An angiosperm phylogeny was reconstructed in a maximum likelihood analysis of sequences of four mitochondrial genes,atp1,matR,nad5,and rps3,from 380 species that represent 376 genera and 296 families of seed *** is largely congruent with the phylogeny of angiosperms reconstructed from chloroplast genes atpB,matK,and rbcL,and nuclear 18S *** basalmost lineage consists of Amborella and Nymphaeales(including Hydatellaceae).Austrobaileyales follow this clade and are sister to the mesangiosperms,which include Chloranthaceae,Ceratophyllum,magnoliids,monocots,and *** the exception of Chloranthaceae being sister to Ceratophyllum,relationships among these five lineages are not well *** eudicots,Ranunculales,Sabiales,Proteales,Trochodendrales,Buxales,Gunnerales,Saxifragales,Vitales,Berberidopsidales,and Dilleniales form a basal grade of lines that diverged before the diversification of rosids and *** rosids,the COM(Celastrales-Oxalidales-Malpighiales) clade is sister to malvids(or rosid II),instead of to the nitrogen-fixing clade as found in all previous large-scale molecular analyses of *** and Caryophyllales are members of an expanded asterid *** study shows that the mitochondrial genes are informative markers for resolving relationships among genera,families,or higher rank taxa across *** low substitution rates and low homoplasy levels of the mitochondrial genes relative to the chloroplast genes,as found in this study,make them particularly useful for reconstructing ancient phylogenetic relationships.A mitochondrial gene-based angiosperm phylogeny provides an independent and essential reference for comparison with hypotheses of angiosperm phylogeny based on chloroplast genes,nuclear genes,and non-molecular data to reconstruct the underlying organismal phylogeny.

关键词： angiosperm homoplasy mitochondrial gene molecular evolutionary rate phylogeny rosids.

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Light Intensity and Floral Transition： Chloroplast Says ＂Time to Flower!＂

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Molecular Plant 2016年第12期9卷 1551-1553页

作者： hendry Susila Suhyun Jin Ji Hoon Ahn Creative Research Initiatives Department of Life Sciences Korea University Seoul 02841 South Korea

Flowering represents a pivotal developmental transition from the vegetative stage to the reproductive stage. The timing of flower- ing must be carefully controlled under ever-changing environ- mental conditions to ensure successful reproduction. Extensive genetic and molecular biological analyses in the model species Arabidopsis thaliana have identified important regulators of flowering time and revealed a complex network of highly inter- connected pathways that are regulated by seasonal cues （e.g., light and temperature） and internal factors （e.g., age and nutrient availability）（Bouche et al., 2016）.

关键词： Prediction Classification Plant

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p53-dependent and independent apoptosis induced by ionizing radiation in murine bone marrow cells

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Chinese Science Bulletin 1997年第2期42卷 155-159页

作者： Cui, YF Zhou, PK Lord, BI hendry, JH BEIJING INST RADIAT MED BEIJING 100850PEOPLES R CHINA

APOPTOSIS or programmed cell death is a model of cell death, along with typical morphological and biochemical changes. The cell death, occurring during embryonic development, T and B cell maturation and endocrine-induced atrophy, is a physiological apoptosis which controls the amount of cells in the body. Apoptosis can also be induced by various factors, such as ionizing radiation and anti-tumour agents which damage DNA, and has been proposed to be a consequence of the induced expression of some tumour-related genes or increase of the proteins sta-

关键词： apoptosis p53 knock-out mouse bone marrow cells ionizing radiation.

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Arabidopsis ABF3 and ABF4 Transcription Factors Act with the NF-YC Complex to Regulate SOC1 Expression and Mediate Drought-Accelerated Flowering

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Molecular Plant 2019年第4期12卷 489-505页

作者： Keumbi Hwang hendry Susila Zeeshan Nasim Ji-Yul Jung Ji Hoon Ahn Department of Life Sciences Korea University Anamro 145 Seongbuk-Gu Seoul 02841 South Korea

The drought-escape response accelerates flowering in response to drought stress, allowing plants to adaptively shorten their life cycles. Abscisic acid (ABA) mediates plant responses to drought, but the role of ABA-responsive element (ABRE)-binding factors (ABFs) in the drought-escape response is poorly understood. Here, we show that Arabidopsis thaliana ABF3 and ABF4 regulate flowering in response to drought through transcriptional regulation of the floral integrator SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 (SOC1). The abf3 abf4 mutant displayed ABA-insensitive late flowering under long-day conditions. Ectopic expression of ABF3 or ABF4 in the vasculature, but not in the shoot apex, induced early flowering, whereas expression of ABF3 fused with the SRDX transcript!onal repressor domain delayed flowering. We identified SOC1 as a direct downstream target of ABF3/4, and found that SOC1 mRNA levels were lower in abf3 abf4 than in wild-type plants. Moreover, induction of SOC1 by ABA was hampered in abf3 abf4 mutants. ABF3 and ABF4 were enriched at the -1028- to -657-bp region of the SOC1 promoter, which does not contain canonical ABF-ABRE-binding motifs but has the NF-Y binding element. We found that ABF3 and ABF4 interact with nuclear factor Y subunit C (NF-YC) 3/4/9 in vitro and in planta, and induction of SOC1 by ABA was hampered in nf-yc3 yc4 yc9 mutants. Interestingly, the abf3 abf4, nf-yc3 yc4 yc9, and sod mutants displayed a reduced drought-escape response. Taken together, these results suggest that ABF3 and ABF4 act with NF-YCs to promote flowering by inducing SOC1 transcription under drought conditions . This mechanism might contribute to adaptation by enabling plants to complete their life cycles under drought stress.

关键词： drought escape abscisic acid ABF3 ABF4 NF-YC SOC1

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FLOWERING LOCUS M isoforms differentially affect the subcellular localization and stability of SHORT VEGETATIVE PHASE to regulate temperature-responsive flowering in Arabidopsis

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Molecular Plant 2022年第11期15卷 1696-1709页

作者： Suhyun Jin Sun Young Kim hendry Susila Zeeshan Nasim Geummin Youn Ji Hoon Ahn Department of Life Sciences Korea UniversitySeoul 02841Republic of Korea

Temperature is an important environmental cue that affects flowering time in *** MADS-box transcription factor FLOWERING LOCUS M(FLM)forms a heterodimeric complex with SHORT VEGETATIVE PHASE(SVP)and controls ambient temperature-responsive flowering in ***-βand FLM-δ,two major splice variants produced from the FLM locus,exert opposite effects on flowering,but the molecular mechanism by which the interaction between FLM isoforms and SVP affects temperature-responsive flowering remains poorly ***,we show that FLM-βand FLM-δplay important roles in modulating the temperature-dependent behavior,conformation,and stability of *** localization of SVP decreases as temperature ***-βis required for SVP nuclear translocation at low temperature,whereas SVP interacts with FLM-δmainly in the cytoplasm at high *** preferentially binds to FLM-βat low temperature in tobacco leaf *** shows high binding affinity to FLM-βat low temperature and to FLM-δat high *** undergoes similar structural changes in the interactions with FLM-βand FLM-δ;however,FLM-δlikely causes more pronounced conformational changes in the SVP ***-δcauses rapid degradation of SVP at high temperature,compared with FLM-β,possibly via *** of lysine 53 or lysine 165 in SVP causes increased abundance of SVP due to reduced ubiquitination of SVP and thus delays flowering at high *** findings suggest that temperature-dependent differential interactions between SVP and FLM isoforms modulate the temperature-responsive induction of flowering in Arabidopsis.

关键词： flowering ambient temperature SVP FLM FLM-β FLM-δ nuclear translocation

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一种嗜热耐酸古细菌JP2菌株编码的热稳定DNA连接酶的生物化学及酶学特性研究(英文)

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生物化学与生物物理进展 2006年第9期33卷 881-889页

作者：兰海燕刘纯 hendry PHIL 新疆大学生命科学与技术学院新疆生物资源基因工程重点实验室乌鲁木齐830046 Molecular Science Division CSIRONorth RydeNSW1670Australia

对分离自巴布亚新几内亚地热活跃区的一种嗜热耐酸古细菌——JP2菌株中的DNA连接酶基因进行了克隆、表达、纯化,并对其生物化学及酶学特性进行了研究.对其核酸及氨基酸序列的分析表明:JP2菌株的DNA连接酶与古细菌种Sulfolobussolfatari... 详细信息

对分离自巴布亚新几内亚地热活跃区的一种嗜热耐酸古细菌——JP2菌株中的DNA连接酶基因进行了克隆、表达、纯化,并对其生物化学及酶学特性进行了研究.对其核酸及氨基酸序列的分析表明:JP2菌株的DNA连接酶与古细菌种Sulfolobussolfataricus和Sulfolobusshibatae的DNA连接酶具有很高的同源性,尤其在与功能紧密相关的6个保守结构基序的一致性更高.JP2连接酶表现出高的DNA缺口连接活性,在二价金属辅因子的选择方面,JP2连接酶更倾向于Mn2+离子而不是Mg2+、Ca2+及其他离子.不同温度时的热稳定性测试显示:JP2连接酶在50～80℃时为较适连接温度,当温度不超过85℃时,连接酶的活性在5h内保持相对稳定,但在90℃以上活性则很快降低.还分离纯化了JP2的分子伴侣——TF55,并将其应用于增加JP2连接酶的热稳定性研究.结果表明:在体外85℃时,分子伴侣未增加连接酶的热稳定性,可能的原因是在85℃体外状态下TF55本身就表现出不稳定性.

关键词： DNA连接酶 Sulfolobus spp. 嗜热耐酸古细菌耐热性分子伴侣TF55

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Following up the afterglow:strategy for X-ray observation triggered by gravitational wave events

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Research in Astronomy and Astrophysics 2021年第12期21卷 405-415页

作者： Mu-Xin Liu Hui Tong Yi-Ming Hu Man-Leong Chan Zhu Liu Hui Sun Martin hendry School of Physics and Astronomy Sun Yat-sen University(Zhuhai Campus)Zhuhai 519082China Tian Qin Research Center for Gravitational Physics Sun Yat-sen University(Zhuhai Campus)Zhuhai 519082China Department of Applied Physics Fukuoka UniversityNanakuma 8-19-1Fukuoka 814-0180Japan Max Planck Institute for extraterrestrial Physics Gie?enbachstra?e 185748 GarchingGermany Key Laboratory of Space Astronomy and Technology National Astronomical ObservatoriesChinese Academy of SciencesBeijing 100101China SUPA School of Physics and AstronomyUniversity of GlasgowGlasgow G128QQUK

The multi-messenger observation of coalescing compact binary systems promises great scientific ***,synthesising observations from both gravitational wave and electromagnetic channels remains *** the context of the day-to-week long emission from a macronova,the binary neutron star merger GW170817 remains the only event with successful electromagnetic *** this manuscript,we explore the possibility of using the early stage X-ray afterglow to search for the electromagnetic counterpart of a gravitational wave *** algorithms,the simple and straightforward sequential observation(SO)and the step-wise optimizing local optimization are considered and applied to some simulated *** consider the WXT from the proposed Einstein Probe as a candidate X-ray telescope,which has a very wide field of view of 3600 deg^(2).Benefiting from the large field of view and high sensitivity,we find that the SO algorithm not only is easy to implement,but also promises a good chance of actual detection.

关键词： gravitational waves X-ray afterglow multi-messenger astronomy

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Chloroplasts prevent precocious flowering through a GOLDEN2-LIKE–B-BOX DOMAIN PROTEIN module

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Plant Communications 2023年第3期4卷 215-227页

作者： hendry Susila Zeeshan Nasim Katarzyna Gawarecka Ji-Yul Jung Suhyun Jin Geummin Youn Ji Hoon Ahn Department of Life Sciences Korea UniversitySeoul 02841Republic of Korea

The timing of flowering is tightly controlled by signals that integrate environmental and endogenous *** produced by carbon fixation in the chloroplast are a crucial endogenous cue for floral *** also convey information directly to the nucleus through retrograde signaling to control plant growth and ***,we show that mutants defective in chlorophyll biosynthesis and chloroplast development flowered early,especially under long-day conditions,although low sugar accumulation was seen in some *** treated with the bleaching herbicide norflurazon also flowered early,suggesting that chloroplasts have a role in floral *** retrograde signaling mutants,the golden2-like 1(glk1)glk2 double mutants showed early flowering under long-day *** early flowering was completely suppressed by constans(co)and flowering locus t(ft)*** vascular-specific knockdown of both GLK1 and GLK2 phenocopied the glk1 glk2 ***1 and GLK2 repress flowering by directly activating the expression of B-BOX DOMAIN PROTEIN 14(BBX14),BBX15,and BBX16 via CCAATC cis-elements in the BBX ***14/15/16 physically interact with CO in the nucleus,and expression of BBXs hampered CO-mediated FT *** knockdown of BBX14/15/16 by artificial miRNA(35S::amiR-BBX14/15/16)caused early flowering with increased FT transcript levels,whereas BBX overexpression caused late *** of glk1/2 and 35S::amiR-BBX14/15/16 plants was insensitive to norflurazon *** these observations together,we propose that the GLK1/2-BBX14/15/16 module provides a novel mechanism explaining how the chloroplast represses flowering to balance plant growth and reproductive development.

关键词： Arabidopsis thaliana BBX chloroplast flowering GLK retrograde signaling

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Sternocleidomastoid flap for reconstruction of tongue small cell carcinoma: A case report

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World Journal of Surgical Procedures 2024年第2期14卷 8-14页

作者： hendry Irawan Made Bagus Sastrapramaya Bharata Surgical Oncology Division Department of SurgeryMedical Faculty Universitas UdayanaDenpasar 80113BaliIndonesia General Surgery Resident Department of SurgeryMedical Faculty Universitas UdayanaProf.Dr.I.G.N.G.Ngoerah General HospitalDenpasar 80113BaliIndonesia

BACKGROUND The management of tongue carcinoma is excision and radical neck dissection followed with *** is a case report of a patient with tongue squamous cell carcinoma(SCC)who underwent the procedure with sternocleidomastoid(SCM)flap *** SUMMARY A 52-year-old woman without smoking history complained tongue ulcer since 3 years *** on the histopathological examination,the patient was diagnosed with T2N2M0 right tongue SCC and underwent wide excision of tumor;right mandibular;neck dissection and were reconstructed with SCM *** SCC of the tongue requires wide excision and dissection of the neck and mandible if infiltration into the surrounding lymph nodes has been *** SCM flap reconstruction could be used post-surgery.

关键词： Sternocleidomastoid flap Neck dissection Mandibular dissection Squamous cell carcinoma of the tongue Case report

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Gravitational wave astrophysics, data analysis and multimessenger astronomy

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Science China(Physics,Mechanics & Astronomy) 2015年第12期58卷 44-64页

作者： LEE Hyung Mok LE BIGOT Eric-Olivier DU ZhiHui LIN ZhangXi GUO XiangYu WEN LinQing PHUKON Khun Sang PANDEY Vihan BOSE Sukanta FAN Xi-Long hendry Martin Department of Physics and Astronomy Seoul National University Research Institute of Information Technology Tsinghua National Laboratory for Information Science and TechnologyTsinghua University Laboratoire Astro Particule et Cosmologie (APC) Universit Paris Diderot-Paris 7 Bc/timent Condorcet Case 7020 75205 Paris Cedex 13 France Tsinghua National Laboratory for Information Science and Technology Department of Computer Science and TechnologyTsinghua University School of Physics The University of Western Australia Department of Physics IIT Kanpur Inter-University Centre for Astronomy and Astrophysics Department of Physics & Astronomy Washington State University School of Physics and Electronics Information Hubei University of Education SUPA School of Physics and Astronomy University of Glasgow

This paper reviews gravitational wave sources and their detection. One of the most exciting potential sources of gravitational waves are coalescing binary black hole systems. They can occur on all mass scales and be formed in numerous ways, many of which are not understood. They are generally invisible in electromagnetic waves, and they provide opportunities for deep investigation of Einstein's general theory of relativity. Sect. 1 of this paper considers ways that binary black holes can be created in the universe, and includes the prediction that binary black hole coalescence events are likely to be the first gravitational wave sources to be detected. The next parts of this paper address the detection of chirp waveforms from coalescence events in noisy *** analysis is computationally intensive. Sect. 2 reviews a new and powerful method of signal detection based on the GPUimplemented summed parallel infinite impulse response filters. Such filters are intrinsically real time alorithms, that can be used to rapidly detect and localise signals. Sect. 3 of the paper reviews the use of GPU processors for rapid searching for gravitational wave bursts that can arise from black hole births and coalescences. In sect. 4 the use of GPU processors to enable fast efficient statistical significance testing of gravitational wave event candidates is reviewed. Sect. 5 of this paper addresses the method of multimessenger astronomy where the discovery of electromagnetic counterparts of gravitational wave events can be used to identify sources, understand their nature and obtain much greater science outcomes from each identified event.

关键词： gravitational waves data analysis multimessenger

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