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Nitrate regulates rhizobial and mycorrhizal symbiosis in common bean(Phaseolus vulgaris L.)

Journal of Integrative Plant Biology 2014年第3期56卷 281-298页

作者： Kalpana Nanjareddy Lourdes Blanco manoj‐Kumar Arthikala Xochitl Alvarado Affantrange federico Sánchez miguel Lara Genómica Funcional de Eucariotes Centro de Ciencias Genómicas Universidad Nacional Autónoma de México UNAM Apartado Postal 510‐3Cuernavaca Morelos 62271 México Escuela Nacional de Estudios Superiores‐UNAm León Blvd.UNAM 2011 Predio El Saucillo y El PotreroComunidad de los Tepetates León Gto.C.P.37684 Mexico Departamento de Biología molecular de Plantas Instituto de BiotecnologíaUniversidad Nacional Autónoma de México UNAM Apartado Postal 510‐3 Cuernavaca Morelos 62271 México

Nitrogen-limited conditions are considered to be a prerequisite for legume-rhizobial symbiosis, but the effects of nitrate-rich conditions on symbiotic status remain poorly understood. We addressed this issue by examining rhizobial （Rhizobim tropici） and arbusclar mycorrhizal （Glomus intraradices） symbiosis in Phaseolus vulgaris L. cv. Negro Jamapa under nitrate pre-incubation and continuous nitrate conditions. Our results indicate that nitrate pre-incubation, independent of the concentration, did not affect nodule development. However, the continuous supply of nitrate at high concentrations impaired nodule maturation and nodule numbers. Low nitrate conditions, in addition to positively regulating nodule number, biomass, and nitrogenase activity, also extended the span of nitrogen-fixing activity. By contrast, for arbuscular mycorrhizae, continuous 1o and 50mmol/L nitrate increased the percent root length colonization, concomitantly reduced arbuscule size, and enhanced ammonia transport without affecting phosphate transport. Therefore, in this manuscript, we have proposed the importance of nitrate as a positive regulator in promoting both rhizobial and mycorrhizal symbiosis in the common bean.

关键词： Arbuscule common bean mycorrhiza nitrate nodule Rhizobium

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Autoantibodies against beta cells to predict early insulin requirements in pediatric patients with clinically diagnosed type 2 diabetes

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World Journal of Diabetes 2024年第8期15卷 1717-1725页

作者： Jorge m molina Patricia G medina Rita A Gomez Julia R Herrera Nancy L martínez Brenda Hernández Yesenia García Department of Endocrinology Children’s Hospital Federico GomezMexico 06720Mexico National medical Center"Siglo XXI" UMAE Hosp EspecialidadesUnidad Invest Med Epidemiol ClinMexican Social Security InstituteMexico 06720Mexico Research Division UMAE Hospital de EspecialidadesCentro Médico Nacional Siglo XXIMexican Institute of Social SecurityMexico 06720Mexico Epidemiology Research Unit in Endocrinology and Nutrition Federico Gómez Children’s HospitalMexico 06720Mexico Department of Endocrinology Comprehensive Health Unit for Trans PersonsMexico 11340Mexico

BACKGROUND Autoimmunity has emerged as a probable disease modifier in patients with clinically diagnosed type 2 diabetes mellitus(T2Dm),that is,patients who have insulin resistance,obesity,and other cardiovascular risk factors,suggesting that the presence of glutamic acid decarboxylase(anti-GAD65),islet antigen 2(anti-IA2),and zinc transporter 8(anti-Zn8T)antibodies could have deleterious effects on beta cell function,causing failure and earlier requirement for insulin *** To evaluate anti-GAD65,anti-IA2 and anti-Zn8T as predictors of early insulin requirement in adolescents with a clinical diagnosis of *** This was a case–control study in patients with clinically diagnosed with T2Dm(68 cases and 64 controls with and without early insulin dependence respectively),male and female,aged 12–18 ***,blood pressure,glucose,insulin,C-peptide,glycated hemoglobin A1c,and lipid profiles were *** was used to measure anti-GAD65,anti-IA2,and anti-Zn8T *** statistics,Pearson'sχ2 test,Student's t test,and logistic regression was performed.Pmale),with a mean age was 15.9±1.3 years,and there was a disease evolution time of 4.49±0.88 *** presence of anti-GAD65,anti-IA2,and anti-Zn8T positivity was found in 29.5%,18.2%,and 15.9%,*** the groups by early or no insulin dependence showed that the group with insulin had a higher frequency of antibody positivity:anti-GAD65 odds ratio(OR):2.42(1.112–5.303,P=0.026);anti-IA2:OR:1.55(0.859–2.818,P=0.105);and anti-Zn8T:OR:7.32(2.039–26.279,P=0.002).CONCLUSION Anti-GAD65 positivity was high in our ***-GAD65 and anti-Zn8T positivity showed a significantly depleted beta cell reserve phenotype,leading to an increased risk of early insulin dependence.

关键词： Diabetes Obesity Adolescents Autoimmunity Beta cell Insulin requirements

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Ectopic lignification in primary cellulose-deficient cell walls of maize cell suspension cultures

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Journal of Integrative Plant Biology 2015年第4期57卷 357-372页

作者： Hugo mélida Asier Largo-Gosens Esther Novo-Uzal Rogelio Santiago federico Pomar Pedro García Penélope García-Angulo José Luis Acebes Jesús álvarez Antonio Encina Plant Physiology Laboratory Faculty of Biological and Environmental SciencesUniversity of León Centre for Plant Biotechnology and Genomics (CBGP) Politechnical University of Madrid Department of Plant Biology University of Murcia Plant Biology and Soil Sciences Department Faculty of BiologyUniversity of Vigo Environmental Agrobiology Soil and Plant Quality (University of Vigo)Associated Unit to Biological Mission of Galicia (CSIC) Department of Animal Biology Plant Biology and EcologyUniversity of A Coru?a Department of molecular Biology(área de Genética) Faculty of Biological and Environmental SciencesUniversity of León

maize （Zea mays L.） suspension-cultured cells with up to 7o% less cellulose were obtained by stepwise habituation to dichlobenil （DCB）, a cellulose biosynthesis inhibitor. Cellulose deficiency was accompanied by marked changes in cell wall matrix polysaccharides and phenolics as revealed by Fourier transform infrared （FTIR） spectroscopy. Cell wall compositional analysis indicated that the cellulosedeficient cell walls showed an enhancement of highly branched and cross-linked arabinoxylans, as well as an increased content in ferulic acid, diferulates and p-coumaric acid, and the presence of a polymer that stained positive for phloroglucinol. In accordance with this, cellulose-deficient cell walls showed a fivefold increase in Klason-type lignin. Thioacidolysis/GC-mS analysis of cellulose-deficient cell walls indicated the presence of a lignin-like polymer with a Syringyl/Guaiacyl ratio of 1.45, which differed from the sensu stricto stress-related lignin that arose in response to shortterm DCB-treatments. Gene expression analysis of these ceils indicated an overexpression of genes specific for the biosynthesis of monolignol units of lignin. A study of stress signaling pathways revealed an overexpression of some of the iasmonate signaling pathway genes, which might trigger ectopic lignification in response to cell wall integrity disruptions. In summary, the structural plasticity of primary cell walls is proven, since a lignification process is possible in response to cellulose impoverishment.

关键词： Cellulose DCB dichlobenil ectopic lignin maize

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Pitfalls of barcodes in the study of worldwide SARSCoV-2 variation and phylodynamics

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Zoological Research 2021年第1期42卷 87-93页

作者： Jacobo Pardo-Seco Alberto Gómez-Carballa Xabier Bello federico martinón-Torres Antonio Salas Unidade de Xenética Instituto de Ciencias Forenses(INCIFOR)Facultade de MedicinaUniversidade de Santiago de Compostelaand GenPoB Research GroupInstituto de Investigación Sanitaria(IDIS)Hospital Clínico Universitario de Santiago(SERGAS)Galicia 15706Spain Genetics Vaccines and Pediatric Infectious Diseases Research Group(GENVIP)Instituto de Investigación Sanitaria de Santiago(IDIS)and Universidad de Santiago de Compostela(USC)Galicia 15706Spain Translational Pediatrics and Infectious Diseases Department of PediatricsHospital Clínico Universitario de Santiago de Compostela(SERGAS)Galicia 15706Spain

DEAR EDITOR,Analysis of SARS-CoV-2 genome variation using a minimal number of selected informative sites conforming a genetic barcode presents several *** show that purely mathematical procedures for site selection should be supervised by known phylogeny(i)to ensure that solid tree branches are represented instead of mutational hotspots with poor phylogeographic proprieties,and(ii)to avoid phylogenetic *** propose a procedure that prevents information redundancy in site selection by considering the cumulative informativeness of previously selected sites(as a proxy for phylogenetic-based criteria).This procedure demonstrates that,for short barcodes(e.g.,11 sites),there are thousands of informative site combinations that improve previous *** also show that barcodes based on worldwide databases inevitably prioritize variants located at the basal nodes of the phylogeny,such that most representative genomes in these ancestral nodes are no longer in ***,coronavirus phylodynamics cannot be properly captured by universal genomic barcodes because most SARS-CoV-2 variation is generated in geographically restricted areas by the continuous introduction of domestic variants.

关键词： dynamics properly purely

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Shedding Light on Large-Scale Chromatin Reorganization in Arabidopsis thaliana

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molecular Plant 2012年第3期5卷 583-590页

作者： martijn van Zanten federico Tessadori Anton J.m. Peeters Paul Fransz molecular Plant Physiology Institute of Environmental Biology Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands Department of Plant Breeding and Genetics Max Planck Institute for Plant Breeding Research Carl-von-Linne＇-weg 10 50829 Cologne Germany Cardiac Development and Genetics Group Hubrecht Institute for Developmental Biology and Stem Cell Research Uppsalalaan 8 3584 CT Utrecht The Netherlands Plant Ecophysiology Institute of Environmental Biology Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands Nuclear Organization Group Swammerdam Institute for Life Sciences University of Amsterdam Kruislaan 318 1098 SM Amsterdam The Netherlands

Plants need to respond quickly and appropriately to various types of light signals from the environment to optimize growth and development. The immediate response to shading, reduced photon flux （low light）, and changes in spectral quality involves changes in gene regulation. In the case of more persistent shade, the plant shows a dramatic change in the organization of chromatin. Both plant responses are controlled via photoreceptor signaling proteins. Re- cently, several studies have revealed similar features of chromatin reorganization in response to various abiotic and biotic signals, while others have unveiled intricate molecular networks of light signaling towards gene regulation. This opinion paper briefly describes the chromatin （de）compaction response from a light-signaling perspective to provide a link be- tween chromatin and the molecular network of photoreceptors and E3 ubiquitin ligase complexes.

关键词： light signaling chromatin compaction molecular network Arabidopsis

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Scalable and low-cost fabrication of flexible WS_(2) photodetectors on polycarbonate

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npj Flexible Electronics 2022年第1期6卷 226-234页

作者： Jorge Quereda Sruthi Kuriakose Carmen munuera federico J.mompean Abdullah m.Al-Enizi Ayman Nafady Enrique Diez Riccardo Frisenda Andres Castellanos-Gomez GISC Departamento de Física de MaterialesUniversidad Complutense de MadridMadridSpain materials Science Factory Instituto de Ciencia de Materiales de Madrid(ICMMCSIC)28049 MadridSpain Department of Chemistry College of ScienceKing Saud UniversityRiyadh 11451Saudi Arabia Nanotechnology Group USAL–NanolabUniversidad de Salamanca37008 SalamancaSpain

We present a low-cost and easy-to-implement technique to fabricate large-area WS_(2) photodetector devices onto transparent and flexible polycarbonate *** method relies on the deposition of large-area(in the cm scale)thin films(~30 nm thick)of WS_(2) by a recently introduced abrasion-induced *** electrical contacts are then deposited by thermal evaporation through a shadow *** photodetectors present well-balanced performances with an good trade-off between responsivity(up to 144 mA/W at a source-drain voltage of 10 V and illumination power of 1μW)and response time(down to~70µs)and a detectivity value of 10^(8) *** found that the devices perform very reversibly upon several illumination and straining cycles and we found a moderate device-to-device variation.

关键词： drain illumination cost

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Influence of dietary hydrogenated palm oil supplementation on serum biochemistry and progesterone levels in dairy goats

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Animal Nutrition 2019年第3期5卷 286-289页

作者： Raffaella Tudisco Nadia musco maria E.Pero Valeria m.morittu micaela Grossi Vincenzo mastellone Gina Cavaliere metha Wanapat federico Infascelli Pietro Lombardi Department of Veterinary medicine and Animal Production University of Naples Federico IINapoli80137Italy Department of Health Science University Magna Graecia of CatanzaroCatanzaro88100Italy Department of Biology University of Naples Federico IINapoli80134Italy Tropical Feed Resources Research and Development Center(TROFREC) Department of Animal ScienceFaculty of AgricultureKhon Kaen UniversityKhonKaen40260Thailand

The aim of this research was to investigate the influence of hydrogenated palm oil(HPO)added to a dairy goat diet on serum biochemistry and progesterone *** pregnant Cilentana dairy goats were equally divided into 2 groups(control [CTR]and HPO groups).After kidding,concentrated feed for both groups was gradually increased up to 400 g/(animal d).and the HPO group received 50 g/(animal·d)of *** with HPO significantly increased cholesterol levels(mg/dL, 63.80 vs.54.68 at 30 d.Pmpared with the CTR group although no significant differences were detected for liver and kidney function ***,other biochemical parameters were not affected by HPO supplementation thus suggesting no change occurred in lipid and protein ***,a significant correlation was found between progesterone levels and serum cholesterol(r = 0.65,P≤0.01)although these were not significantly higher in HPO supplemented *** dose and time of HPO supplementation appears critical as regards assessing the limits between the risks and benefits of HPO supplementation in dairy *** the tested *** was well tolerated by the animals and may represent a useful tool to increase energy availability during highly demanding periods.

关键词： Goat Hydrogenated palm oil metabolism Progesterone

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Phylogeography of SARS-CoV-2 pandemic in Spain:a story of multiple introductions,micro-geographic stratification,founder effects,and super-spreaders

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Zoological Research 2020年第6期41卷 605-620页

作者： Alberto Gomez-Carballa Xabier Bello Jacobo Pardo-Seco maria Luisa Perez del molino federico martinon-Torres Antonio Salas Unidade de Xendtica Instituto de Ciencias Forenses(I NCI FOR)Facultade de MedicinaUniversidade de Santiago de Compostelaand GenPoB Research GroupInstituto de Investigaci6n Sanitaria(IDIS)Hospital Clinico Universitario de Santiago(SERGAS)Galicia 15706Spain Genetics Vaccines and Pediatric Infectious Diseases Research Group(GENVIP)Instituto de Investigacion Sanitaria de Santiago(IDIS)and Universidade de Santiago de Compostela(USC)Galicia 15706Spain Translational Pediatrics and Infectious Diseases Department of PediatricsHospital Clinico Universitario de Santiago de Compostela(SERGAS)Galicia 15706Spain Servicio de microbiologia y Parasitologia Complejo Hospitalario Universitario de Santiago de CompostelaSantiago de CompostelaGalicia15706 Spain

Spain has been one of the main global pandemic epicenters for coronavirus disease 2019(COVID-19).Here,we analyzed>41000 genomes(including>26000 high-quality(HQ)genomes)downloaded from the GISAID repository,including 1245(922 HQ)sampled in *** aim of this study was to investigate genome variation of novel severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)and reconstruct phylogeographic and transmission patterns in *** analysis suggested at least 34 independent introductions of SARS-CoV-2 to Spain at the beginning of the *** lineages spread very successfully in the country,probably favored by super-spreaders,namely,A2 a4(7.8%),A2 a5(38.4%),A2 a10(2.8%),B3 a(30.1%),and B9(8.7%),which accounted for 87.9% of all genomes in the Spanish *** distinct feature of the Spanish SARS-Cov-2 genomes was the higher frequency of B lineages(39.3%,mainly B3 a+B9)than found in any other European *** B3 a,B9,(and an important sub-lineage of A2 a5,namely,A2 a5 c)most likely originated in Spain,the other three haplogroups were imported from other European *** B3 a strain may have originated in the Basque Country from a B3 ancestor of uncertain geographic origin,whereas B9 likely emerged in *** time of the most recent common ancestor(TmRCA)of SARS-CoV-2 suggested that the first coronavirus entered the country around 11 February 2020,as estimated from the TmRCA of B3 a,the first lineage detected in the ***,earlier claims that the D614 G mutation is associated to higher transmissibility is not consistent with the very high prevalence of COVID-19 in Spain when compared to other countries with lower disease incidence but much higher frequency of this mutation(56.4% in Spain vs.82.4% in rest of Europe).Instead,the data support a major role of genetic drift in modeling the micro-geographic stratification of virus strains across the country as well as the role of SARS-CoV-2 super-spreaders.

关键词： Covid-19 SARS-CoV-2 Genomics Phylogeny Phylogeography

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Small bowel carcinoid: Location isn’t everything!

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World Journal of Gastrointestinal Surgery 2013年第8期5卷 239-244页

作者： Danielle m Hari Stephanie L Goff Heidi J Reich Anna m Leung myung-Shin Sim Ji Hey Lee Edward Wolin farin Amersi Gastrointestinal Research Program John Wayne Cancer Institute at Saint John’s Health Center Dana-Farber Cancer Institute Division of Surgical Oncology Cedars-Sinai Medical Center Department of Biostatistics John Wayne Cancer Institute at Saint John’s Health Center

AIm: To investigate the prognostic significance of the primary site of disease for small bowel carcinoid(SBC) using a population-based ***: The Surveillance,Epidemiology and End Results(SEER) database was queried for histologically confirmed SBC between the years 1988 and *** survival(OS) and disease-specific survival(DSS) were analyzed using the Kaplan-meier method and compared using Log rank *** rank and multivariate Cox regression analyses were used to identify predictors of survival using age,year of diagnosis,race,gender,tumor histology/size/location,tumor-node-metastasis stage,number of lymph nodes(LNs) examined and percent of LNs with ***: Of the 3763 patients,51.2% were male with a mean age of 62.13 *** follow-up was 50 *** 10-year OS and DSS for duodenal primaries were significantly better when compared to jejunal and ileal primaries(P = 0.02 and multivariate Cox regression analysis,after adjusting for multiple factors,primary site location was not a significant predictor of survival(P = 0.752 for OS and P = 0.966 DSS) while age,number of primaries,number of LNs examined,T-stage and m-stage were independent predictors of ***: This 21-year,population-based study of SBC challenges the concept that location of the primary lesion alone is a significant predictor of survival.

关键词： Small bowel carcinoid Primary tumor location Survival Prognosis National Comprehensive Cancer network guidelines

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The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair cell expansion in response to cold

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molecular Plant 2021年第6期14卷 937-948页

作者： michael moison Javier martinez Pacheco Leandro Lucero Camille Fonouni-Farde Johan Rodriguez-melo Natanael mansilla Aurelie Christ Jeremie Bazin moussa Benhamed Fernando Ibanez martin Crespi Jose m.Estevez federico Ariel Instituto de Agrobiotecnología del Litoral Universidad Nacional del LitoralCONICETFBCB/FHUCCentro Científico Tecnológico CONICET Santa FeColectora Ruta Nacional No 168 km.0Paraje El PozoSanta Fe 3000Argentina Fundación Instituto Leloir and IIBBA-CONICET Av.Patricias Argentinas 435Buenos Aires CP C1405BWEArgentina Instituto de Investigaciones Agrobiotecnológicas CONICETUniversidad Nacional de Río CuartoRío Cuarto 5800Argentina Institute of Plant Sciences Paris-Saclay(IPS2) CNRSINRAUniversity Paris-Saclay and University of Paris Bâtiment 63091192 Gif sur YvetteFrance Centro de Biotecnología Vegetal(CBV) Facultad de Ciencias de la Vida(FCsV)Universidad Andres BelloSantiagoChile and Millennium Institute for Integrative Biology(iBio)SantiagoChile

Plant long noncoding RNAs(lncRNAs)have emerged as important regulators of chromatin dynamics,impacting on transcriptional programs leading to different developmental *** lncRNA AUXIN-REGULATED PROmOTER LOOP(APOLO)directly recognizes multiple independent loci across the Arabidopsis genome and modulates their three-dimensional chromatin conformation,leading to transcriptional ***,we show that APOLO recognizes the locus encoding the root hair(RH)master regulator ROOT HAIR DEFECTIVE 6(RHD6)and controls RHD6 transcriptional activity,leading to cold-enhanced RH elongation through the consequent activation of the transcription factor gene RHD6-like ***,we demonstrate that APOLO interacts with the transcription factor WRKY42 and modulates its binding to the RHD6 ***42 is required for the activation of RHD6 by low temperatures and WRKY42 deregulation impairs cold-induced RH ***,our results indicate that a novel ribonucleoprotein complex with APOLO and WRKY42 forms a regulatory hub to activate RHD6 by shaping its epigenetic environment and integrate signals governing RH growth and development.

关键词： root hairs long noncoding RNAs APOLO RHD6 WRKY42 cold temperature

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