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The Genome of Cucurbita argyrosperma (Silver- Seed Gourd) Reveals Faster Rates of Protein- Coding Gene and Long Noncoding RNA Turnover and Neofunctionalization within Cucurbita

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Molecular Plant 2019年第4期12卷 506-520页

作者： Josue Barrera-Red on do enrique ibarra-laclette Alejandra Vazquez-Lobo Yocelyn T. Gutierrez-Guerrero Guillermo Sanchez de la Vega Daniel Pinero Salvador Montes-Hernandez Rafael Lira-Saade Luis E. Eguiarte Departamento de Ecologia Evolutiva Instituto de Ecologia Universidad Nacional Aut6noma de Mexico Circuito Exterior s/n Anexo al Jardin Bot合nico 04510 Ciudad de Mexico Mexico Departamento de Estudios Moleculares Avanzados Instituto de Ecologia A.C. Carretera Antigua a Coatepec No. 351 Col. El Haya. C.P. Xalapa Veracruz 91070 Mexico Centro de Investigaciones en Biodiversidad y Conservacion Universidad Autdnoma del Estado de Morelos Av. Universidad 1001 Col. Chamilpa Cuernavaca Morelos 62209 Mexico Campo Experimental Bajio Instituto Nacional de In vestigaciones Forestales Agricolas y Pecuarias (INIFAP) Km 6.5 Carretera Celaya-San Miguel de Allen de Celaya Guanajuato 38110 Mexico UBIPRO Facultad de Estudios Superiores Iztacala Universidad Nacional Autdnoma de Mexico Av. de los Barrios #1 Col. Los Reyes Iztacala Tlanepantla Edo. de Mex 54090 Mexico

Whole-genome duplications are an important source of evolutionary novelties that change the mode and tempo at which genetic elements evolve within a genome. The Cucurbita genus experienced a wholegenome duplication around 30 million years ago, although the evolutionary dynamics of the coding and noncoding genes in this genus have not yet been scrutinized. Here, we analyzed the genomes of four Cucurbita species, in eluding a newly assembled genome of Cucurbita argyrosperma, and compared the gene con tents of these species with those of five other members of the Cucurbitaceae family to assess the evolutionary dynamics of protein-coding and long intergenic noncoding RNA (lincRNA) genes after the genome duplication. We report that Cucurbita genomes have a higher protein-coding gene birth-death rate compared with the genomes of the other members of the Cucurbitaceae family. C. argyrosperma gene families associated with pollination and transmembrane transport had significantly faster evolutionary rates. lincRNA families showed high levels of gene turnover throughout the phylogeny, and 67.7% of the lincRNA families in Cucurbita showed evidence of birth from the neofunctionalization of previously existing protein-coding genes. Collectively, our results suggest that the whole-genome duplication in Cucurbita resulted in faster rates of gene family evolution through the neofunctionalization of duplicated genes.

关键词： Cucurbita argyrosperma, comparative genomics molecular evolution neofunctionalization long noncoding RNA whole-genome duplication

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Data-driven drug repositioning using olfactory omics profiles:challenges and perspectives in neurodegeneration

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Neural Regeneration Research 2025年第7期20卷 1997-1998页

作者： Paz Cartas-Cejudo Adriana Cortés Mercedes Lachén-Montes Elena Anaya-Cubero Joaquín Fernández-Irigoyen enrique Santamaría Clinical Neuroproteomics Unit Proteomics PlatformNavarrabiomedHospitalario Universitario de Navarra(HUN)Universidad Pública de Navarra(UPNA)IdiSNANavarra Institute for Health ResearchPamplonaSpain

Data-driven drug repositioning using olfactory omics profiles-challenges and perspectives in neurodegeneration:Neurodegenerative diseases are characterized by progressive degeneration and loss of neuronal function in the central nervous *** diseases are often characterized as proteinopathies,which are disorders primarily driven by the aggregation or misfolding of specific amyloid proteins within cells,leading to their dysfunction and eventual *** the gain-of-function hypothesis related to the aggregation of these proteins,recently,an alternative hypothesis regarding the loss-of-function of the soluble monomeric proteins during the process of aggregation into amyloids is gaining *** last event is called proteinopenia and refers to conditions characterized by a deficiency or decrease in the levels of specific soluble proteins in the body(Ezzat et al.,2023).It has been demonstrated that levels of soluble proteins involved in neurodegenerative diseases are decreased.

关键词： diseases drug amyloid

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Wilson's disease in two siblings from Ecuador:Two case reports

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World Journal of Clinical Cases 2025年第3期13卷 50-60页

作者： enrique Carrera Jonathan Alvarado Martina Astudillo Galo Pillajo Department of Gastroenterology and Hepatology Hospital de Especialidades Eugenio EspejoQuito 170136PichinchaEcuador Faculty of Medicine Pontificia Universidad Catolica del EcuadorQuito 170143PichinchaEcuador Department of Radiology Hospital de Especialidades Eugenio EspejoQuito 170136PichinchaEcuador

BACKGROUND Wilson's disease(WD)is a rare metabolic disorder of copper accumulation in organs such as liver,brain,and *** and treatments are challenging in settings,where advanced diagnostic tests are unavailable,copper chelating agents are frequently scarce,healthcare professionals lack disease awareness,and medical follow-ups are *** diagnoses and treatments help prevent complications,improve patients’quality of life,and ensure a normal life *** clinical presentations and outcomes of WD can vary within a single *** SUMMARY We present the cases of two siblings(19 and 27 years)from a consanguineous family in rural Ecuador,diagnosed as having WD during a family *** male patient,diagnosed at age 19 after his brother’s death from acute liver failure,presented with compensated cirrhosis,neurological symptoms,and bilateral Kayser-Fleischer *** developed progressive neurological deterioration during an irregular treatment with D-penicillamine due to medication *** condition improved upon switching to trientine tetrahydrochloride,and his neurological symptoms improved over an 8-year period of *** female patient,diagnosed at age 10,exhibited only biochemical *** treatment history was similar;however,she remained asymptomatic without disease progression over the same follow-up *** discuss the potential influence of epigenetic mechanisms and modifier genes on the various phenotypes,emphasizing the need for research in these areas to optimize therapeutic *** Our patients’medical histories show how early diagnosis and treatment can prevent disease progression;and,how suboptimal treatments impact disease outcomes.

关键词： Wilson disease Kayser-Fleischer rings Copper chelator D-penicillamine Trientine tetrahydrochloride Case report

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Antifungal Activity of Crude Extracts of Tectona grandis L.f. against Wood DecayFungi

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Phyton-International Journal of Experimental Botany 2022年第8期91卷 1795-1808页

作者： enrique Cárcamo-ibarra Mauro Manuel Martínez-Pacheco Abril Munro-Rojas Jorge enrique Ambriz-Parra Crisanto Velázquez-Becerra Facultad de Ingeniería en Tecnología de la Madera Universidad Michoacana de San Nicolás de HidalgoMorelia58030México Instituto de Investigaciones Químico-Biológicas Universidad Michoacana de San Nicolás de HidalgoMorelia58030México

Wood is mainly made up of cellulose, hemicelluloses, lignin polymers and other organic and inorganic substances, making it susceptible to deteriorate by various biological agents. Tectona grandis L.f. (Teak) is a timberspecies with high resistance to biological deterioration, valued for its durability, beauty, and mechanical *** purpose of this work was to evaluate the antifungal activity of crude extracts from teak on various fungi thatcause wood deterioration. For this, Teak heartwood was obtained, then fragmented and pulverized until obtaininga flour which was used for compounds extraction using the Soxhlet technique coupled to a rotary evaporatorthrough solvents of increasing polarity (hexane, dichloromethane, tetrahydrofuran, and acetone). The extractsobtained were tested against fungal organisms collected in the field, and the LC50 was determined using teak crudeextracts on Artemia salina as a biological model. The results obtained showed that a high flour yield was obtainedwith hexane (0.951 g), followed by tetrahydrofuran (0.446 g), dichloromethane (0.348 g), and acetone (0.152 g). Byusing nine fungal organisms that predominantly correspond to the genus Aspergillus, the extractable compoundswere tested, inhibiting 25% of mycelial growth with tetrahydrofuran (T. versicolor), and 40.9% with dichloromethane(G. trabeum). Likewise, the biological model of A. salina showed an LC50 of 84.9 μg/mL with hexane, 43.3 μg/mLwith dichloromethane, 59.6 μg/mL with tetrahydrofuran, and 54.7 μg/mL with acetone. For this reason, it is concluded that Teak wood contains many extractable compounds in relation to its weight, besides having antimicrobialactivity when extracted through polar compounds such as dichloromethane and tetrahydrofuran.

关键词： Tectona grandis wood deterioration naphthoquinone antifungal activity wood protection

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秘鲁中部曼塔罗盆地土壤地球化学特征及质量评价

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地学前缘 2025年第1期32卷 219-235页

作者：刘君安朱意萍姜瀚涛 César De La Cruz POMA Oliberth Pascual GODOY Luis enrique Vargas RODRíGUEZ 郭维民姚春彦王天刚张明姚仲友中国地质调查局南京地质调查中心江苏南京210016 秘鲁地质矿产冶金研究院(INGEMMET) 秘鲁利马15074

为加强中国与秘鲁两国地学合作,推广我国优势的地球化学调查与研究方法,中国地质调查局与秘鲁地质矿产冶金研究院(INGEMMET)以秘鲁中部曼塔罗(Mantaro)盆地为研究区共同开展了多目标地球化学调查,以我国现行相关行业规范为标准,采集样... 详细信息

为加强中国与秘鲁两国地学合作,推广我国优势的地球化学调查与研究方法,中国地质调查局与秘鲁地质矿产冶金研究院(INGEMMET)以秘鲁中部曼塔罗(Mantaro)盆地为研究区共同开展了多目标地球化学调查,以我国现行相关行业规范为标准,采集样品并于我国实验室进行分析测试。调查和研究表明:研究区土壤总体呈弱碱性,Au元素强烈富集,I、C、C_(org)、Cd和N等指标较富集;土壤养分指标N和P较丰富,K则较缺乏,土壤养分综合等级以较丰富(二等)为主,面积占比为74.1%,土壤肥力较好;土壤环境评价指标中,Zn和Pb在少量地区存在轻微—重度污染,Cd和As则有较大面积的污染,土壤环境综合等级以轻微污染和轻度污染为主,污染地区主要分布于曼塔罗河两侧5 km范围内,重度污染区则主要分布于紧邻曼塔罗河地区和人口密度最大的万卡约市周边,重金属污染较严重,污染空间分布与曼塔罗河密切相关;土壤质量综合评价等级主要为中等—劣等,面积占比达83.18%,优质和良好级土壤面积仅占16.82%。综上所述,秘鲁曼塔罗盆地地区土壤养分较丰富,土壤重金属污染较严重,土壤综合质量为中等偏差,建议秘鲁有关部门加强对曼塔罗河及上游重金属污染源的环境管理与整治。

关键词：曼塔罗盆地多目标地球化学调查土地质量地球化学特征秘鲁

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General and Exact Inbreeding Coefficient of Maize Synthetics Derived from Three-Way Line Hybrids

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Phyton-International Journal of Experimental Botany 2022年第1期91卷 33-43页

作者： Alejandro ibarra-Sánchez Juan enrique Rodríguez-Pérez Aureliano Peña-Lomelí Clemente Villanueva-Verduzco Jaime Sahagún-Castellanos Crop Science Department Chapingo Autonomus UniversityChapingo56230México

Synthetic varieties(SVs)are populations generated by randomly mating their *** are a good alternative for low-input farmers who grow onions,maize,and other allogamous crops since the seed produced by a SV does not change from one generation to the *** SV progenitors are commonly pure lines,in this case a synthetic(Syn_(TC))whose parents are t three-way line crosses,a very common type of maize hybrid grown in Mexico,is *** aim was to develop a general and exact equation for the inbreeding coefficient of a Syn_(TC)eF_(m)^(f)Syn_(TC)T because of its relationship with the mean of economically important *** objective arose due to the need for a more advanced study in terms of determining whether F_(m)^(f)Syn_(TC)can be applied specifically and accurately for any number of parents(t),plants per parent(m)and inbreeding coefficient(IC)of the initial lines(F_(L)).A formula for the IC of the Syn_(TC)was derived that,given any values of F_(L)(0≤F_(L)≤1)and t,is specific for any value of m,not just for“large”numbers associated with the context in which the Hardy-Weinberg law is *** was found that F_(m)^(f)Syn_(TC)is very sensitive to changes in m when m is not greater than eight,after which it tends to stabilize very *** summary,unlike previously derived formulas,F_(m)^(f)Syn_(TC)is exact for any values of t,m and F_(L).

关键词： Genotypic array genotypic mean hybrid random mating Zea mays L

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Caving performance through the integration of microseismic activity and numerical modeling at DOZ-PT Freeport,Indonesia

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International Journal of Minerals,Metallurgy and Materials 2009年第1期16卷 1-6页

作者： Rubio enrique Napitupulu Daulat Mining Engineering Department Universidad de Chile Geotechnical Engineering Department PT Freeport IndonesiaTembagapuraIndonesia

This article describes an undergoing research at PT Freeport, Indonesia, in which the main goal is to use the microseismic information recorded as a result of mining to analyze cave propagation and stress performance on the actual production and fixed infrastructure. At the moment, several numerical experiments have been conducted to correlate the mining activity with the microseismic events using the data collected during year 2005 and 2006. As a result of the preliminary analysis a micro- and a macrocracking envelop were proposed on the basis of computation of stress behavior at the location of the events. Stresses have been computed using standard elastic continuous boundary element models. The correlation between the average source radius and the stress performance has provided a method to propose a macrocracking criterion. Several techniques have been tested to nucleate the microseismic activity around different geological features. This last attempt was aimed to look at potential overstresses induced over the undercut and extraction level drifts. A method was devised to integrate the microseismicity into a 3-dimensional ride distribution model. This model has shown to be very effective to quantify the overstress induced as a result of computing volumetric microseismicity density. The volumetric microseismic model showed to induce overstress up to 10 MPa over a period of two months. The future work will concentrate on the calibration of the integrated model with actual damage observations made at the current mining infrastructure.

关键词： microseism underground mining block caving stress distribution microcrack criterion

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Internal Controllability for Parabolic Systems Involving Analytic Non-local Terms

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Chinese Annals of Mathematics,Series B 2018年第2期39卷 281-296页

作者： Pierre LISSY enrique ZUAZUA This article is dedicated to Phillippe G. Ciarlet in the occasion of his 80th birthday with gratitude and admiration/or his mastery and continuous support. Merci Philipp

This paper deals with the problem of internal controllability of a system of heat equations posed on a bounded domain with Dirichlet boundary conditions and perturbed with analytic non-local coupling terms. Each component of the system may be controlled in a different subdomain. Assuming that the unperturbed system is controUable--a property that has been recently characterized in terms of a Kalman-like rank condition--the authors give a necessary and sufficient condition for the controllability of the coupled system under the form of a unique continuation property for the corresponding elliptic eigenvalue system. The proof relies on a compactness-uniqueness argument, which is quite unusual in the context of parabolic systems, previously developed for scalar parabolic equations. The general result is illustrated by two simple examples.

关键词： Parabolic systems Non-local potentials Analyticity Null controllability Kalma~ rank condition Spectral unique continuation

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On the material dependence of experimental shear fracture orientation

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Science China Earth Sciences 2015年第12期58卷 2357-2362页

作者： enrique GOMEZ-RIVAS Albert GRIERA Department of Geology and Petroleum Geology School of Geosciences King’s College University of Aberdeen Departament de Geologia Universitat Autònoma de Barcelona

It is not uncommon to observe shear fractures in ductile rocks oriented at more than 45° with respect to the maximum compression direction. Since these orientations cannot be explained with the classic Mohr-Coulumb or Tresca yield criteria, Zheng et al.(Journal of Structural Geology, 35: 1394–1405, 2011) proposed the maximum effective moment(MEM) failure criterion. This rule suggests that shear fractures in ductile rocks form at ?55° with the maximum compression axis and that this orientation is material-independent and, therefore, universal. Zheng et al.(Science China: Earth Sciences, 57(11): 2819–2824, 2014) used data from our own experiments as supporting evidence of their failure criterion. In this contribution we discuss why shear fracture formation in ductile rocks indeed strongly depends on the mechanical properties of the deforming medium, and why experimental data should not be taken to prove the validity of the MEM criterion. The formation mechanisms and orientations of shear fractures in our experiments significantly vary depending on the material strength and degree and type of anisotropy(composite and intrinsic). We therefore demonstrate using experimental data that a universal failure angle in ductile and anisotropic rocks does not apply. Additionally, we highlight some inconsistencies of the MEM criterion.

关键词： shear fracture anisotropy fracture orientation material properties failure criteria ductile deformation

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A UNIFIED FRAMEWORK FOR SITE SELECTION AND BUSINESS FORECASTING USING ANP

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Journal of Systems Science and Systems Engineering 2006年第2期15卷 178-188页

作者： enrique MU Katz Graduate School of Business University of PittsburghUSA

This paper reports an on-going application of the Analytic Network Process （ANP） in the context of a non-profit organization： The Latin American Studies Association （LASA）. This institution organizes a large international conference every eighteen months and needs to estimate conference attendance in advance （for logistic purposes） as well as selecting a host city where the combination of hotel infrastructure, conference costs, and so on, makes it a sound financial choice. In this paper, ANP will be used to： first, create a model to predict the relative number of attendees to the forthcoming 2009 LASA conference; and second, to create a Benefit-Cost-Risk （BCR） model to select the most suitable Latin American city as the conference site, This paper shows how the combination of these two ANP models, one for prediction and one for selection, can be used together for effective decision-making.

关键词： ANP AHE non-profit decision-making predictive models site selection

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