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杜仲雄花芽2个发育时期转录组分析

植物研究 2020年第2期40卷 284-292页

作者：朱利利杜庆鑫何凤庆军杜红岩中国林业科学研究院经济林研究开发中心郑州450003 国家林业局杜仲工程技术研究中心郑州450003

杜仲(Eucommia ulmoides)雄花富含多种活性成分和营养成分,具有重要的药用和营养价值。为了揭示杜仲雄蕊原基发育相关基因的表达情况,为杜仲雄花芽发育分子调控机制研究提供理论参考。本文以杜仲良种"华仲11号"("Huazhong No.11")为材料... 详细信息

杜仲(Eucommia ulmoides)雄花富含多种活性成分和营养成分,具有重要的药用和营养价值。为了揭示杜仲雄蕊原基发育相关基因的表达情况,为杜仲雄花芽发育分子调控机制研究提供理论参考。本文以杜仲良种"华仲11号"("Huazhong No.11")为材料,采用lllumina高通量测序技术,分别对苞叶原基分化期和雄蕊原基分化期的花芽进行转录组测序,通过生物信息学对2个发育时期的转录组进行比较分析,筛选出与雄花芽形态发育相关的差异基因。结果显示,转录组测序共获得40.48 Gb过滤数据,各样品的clean reads与杜仲基因组进行序列比对,比对效率为90.56%~93.01%。在2个发育时期筛选出583个差异表达基因,其中在雄蕊原基发育期上调基因315个,下调基因267个。差异基因GO和KEGG功能分析显示,差异基因富集在与生长发育、光周期途径、激素合成和信号传导、碳代谢等相关的生物过程和代谢通路。结果显示光周期途径是杜仲成花诱导的重要途径,同时雄花芽在形态分化过程中受碳水化合物、植物激素和其他代谢物质调控。此外,MADS-box家族成员FLC、SOC1、AGL3和AGL8参与杜仲雄蕊器官发育。本研究为杜仲花发育基因调控提供了基础数据,也为雄花用杜仲的分子育种提供了参考。

关键词：杜仲雄花芽不同发育时期转录组测序差异表达基因

杜仲脂氧合酶基因家族全基因组鉴定及其表达特性研究

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植物研究 2019年第6期39卷 927-934页

作者：朱利利庆军杜庆鑫何凤杜红岩中国林业科学研究院经济林研究开发中心郑州450003 国家林业局杜仲工程技术研究中心郑州450003

LOX(脂氧合酶)是动、植物中普遍存在的一种氧合酶,在植物的生长发育和逆境胁迫中发挥重要作用。本研究在杜仲基因组范围内,利用生物信息学方法对LOX基因家族进行全面鉴定,并分析了其基因结构、定位及其所编码蛋白质的理化性质、结构特... 详细信息

LOX(脂氧合酶)是动、植物中普遍存在的一种氧合酶,在植物的生长发育和逆境胁迫中发挥重要作用。本研究在杜仲基因组范围内,利用生物信息学方法对LOX基因家族进行全面鉴定,并分析了其基因结构、定位及其所编码蛋白质的理化性质、结构特征、分类和功能等。结果显示:杜仲LOX基因家族有23条LOX基因序列,分别定位于细胞质或叶绿体中,分为9-LOX和13-LOX两个亚家族,其中9-LOX类型仅包含一个,13-LOX类型包含22个;23个LOX基因非平均分布于12条scaffolds上,一些基因发生串联分布;RNA-Seq表达结果显示6个13-LOX类型基因在杜仲叶、果、树皮和种仁中几乎没有表达,而其他17个LOX基因表达具有组织和时空表达特异性。研究结果为揭示杜仲LOX基因家族成员的功能提供重要线索,为进一步研究LOX基因家族提供理论基础。

关键词：杜仲 LOX基因家族生物信息学基因功能

Solitons and Their Biperiodic Pulsation in Ultrafast Fiber Lasers Based on CB/GO

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Chinese Physics Letters 2024年第8期41卷 28-32页

作者： Zhen-Tao Ju Zhi-Zeng Si xin Yan Chao-qing Dai College of Optical Mechanical and Electrical EngineeringZhejiang A&F UniversityLin’an 311300China

The carbon black(CB)is introduced to manufacture CB/graphene oxide(GO)composite material to mitigate limitations of GO as a saturable absorber with the excellent performance in ultrafast fiber *** a central wavelength of 1555.5 nm,the stable mode-locked pulse with width of 656 fs,repetition rate of 20.16 MHz,and high signal-to-noise ratio of 82.07 dB is experimentally ***,experimental observations for pulsation phenomena of vector biperiodic solitons combining period-1 and period-17,period-2 and period-32,period-3 and period-36 are verified via simulations.

关键词： fiber periodic absorber

dual modification of LiNi_(0.83)Co_(0.11)Mn_(0.06)O_(2) cathode materials by K^(+) doping and Li_(3)PO_(4) coating for lithium ions batteries

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Rare Metals 2024年第7期43卷 3007-3018页

作者： Wei Xiao Jia-Le Wang Zhi-Cheng Yi Cheng-Jin Liu Chang Miao Yu xin Shu-qing Nie College of Chemistry and Environmental Engineering Yangtze UniversityJingzhou 434023China

Li_(3)PO_(4)@Li_(0.99)K_(0.01)Ni_(0.83)Co_(0.11)Mn_(O.06)O_(2)(NCM-KP) cathode powders are synthesized via K^(+)doping in calcination processes and H_3PO_4 coating in sol-gel processes.K^(+) precisely enters into the lattice to widen the(003) plane to 0.4746 nm with a lower cationic disordered degree of 1.87%.Moreover,the surface residual lithium salts are treated by H_3PO_4 to generate a uniform Li_(3)PO_(4) coating layer of approximately 11.41 nm,which completely covers on the surface of secondary spherical particles to improve the interfacial *** 25℃,the NCM-KP electrode delivers a discharge specific capacity of 148.9 mAh·g^(-1) with a remarkable capacity retention ratio of 84.1% after 200 cycles at 1.0C and retains a high reversible specific capacity of 154.4 mAh·g^(-1) at *** at 1.0C and 60℃,it can maintain a reversible discharge specific capacity of 114.6 mAh·g^(-1) with 0.21% of capacity decay per cycle after 200 cycles,which is significantly lower than 0.40% for the pristine NCM ***,the charge transfer resistance of 238.89 Ω for the NCM-KP electrode is significantly lower than 947.41 Ω for the pristine NCM one by restricting the interfacial side ***,combining K+doping and Li_(3)PO_(4) coating is an effective strategy to enable the significant improvement of the electrochemical property of high-nickel cathode materials,which may be mainly attributed to the widened diffusion pathway and the formed Li_(3)PO_(4) protective layer,thus promoting Li~+diffusion rate and preventing the erosion of HF.

关键词： High-nickel cathode material Residual lithium K^(+)doping Li_(3)PO_(4)coating Lithium ions battery

Hepatocellular carcinoma:An analysis of the expression status of stress granules and their prognostic value

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World Journal of Gastrointestinal Oncology 2024年第6期16卷 2571-2591页

作者： qing-Shuai Ren Qiu Sun Shu-Qin Cheng Li-Ming du Ping-Xuan Guo Department of Cardiovascular Surgery North China University of Science and Technology Affiliated HospitalTangshan 063000Hebei ProvinceChina Department of Hepatobiliary Kailuan General HospitalTangshan 063000Hebei ProvinceChina Department of Gastroenterology and Hepatology Tianjin Medical University General HospitalTianjin Institute of Digestive DiseasesTianjin Key Laboratory of Digestive DiseasesTianjin 300000China Department of Traditional Chinese Medicine Kailuan General HospitalTangshan 063000Hebei ProvinceChina Department of Anesthesiology Kailuan General HospitalNorth China University of Science and TechnologyTangshan 063000Hebei ProvinceChina

BACKGROUND Hepatocellular carcinoma(HCC)is a global popular malignant tumor,which is difficult to cure,and the current treatment is *** To analyze the impacts of stress granule(SG)genes on overall survival(OS),survival time,and prognosis in *** The combined The Cancer Genome Atlas-Liver Hepatocellular Carcinoma(TCGA-LIHC),GSE25097,and GSE36376 datasets were utilized to obtain genetic and clinical *** hub gene numbers and corresponding coefficients were determined using the Least absolute shrinkage and selection operator model approach,and genes for constructing risk scores and corresponding correlation coefficients were calculated according to multivariate Cox regression,*** prognostic model’s receiver operating characteristic(ROC)curve was produced and plotted utilizing the time ROC software *** models were constructed to predict the outcomes at 1,3,and 5-year OS prognostications with good prediction *** We identified seven SG genes(DDX1,DKC1,BICC1,HNRNPUL1,CNOT6,DYRK3,CCDC124)having a prognostic significance and developed a risk score *** findings of Kaplan-Meier analysis indicated that the group with a high risk exhibited significantly reduced OS in comparison with those of the low-risk group(Pduals with HCC in the TCGA-HCC *** Ontology and Gene Set Enrichment Analysis suggested that these SGs might be involved in the cell cycle,RNA editing,and other biological *** Based on the impact of SG genes on HCC prognosis,in the future,it will be used as a biomarker as well as a unique therapeutic target for the identification and treatment of HCC.

关键词： Stress granule genes Hepatocellular carcinoma Gastrointestinal neoplasms Bioinformatics prognosis Prognostic value

Association between childhood obesity and gut microbiota:16S rRNA gene sequencing-based cohort study

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World Journal of Gastroenterology 2024年第16期30卷 2249-2257页

作者： Xu-Ming Li qing Lv Ya-Jun Chen Lu-Biao Yan xin Xiong Laboratory Department Nanjing Medical University Affiliated Obstetrics and Gynecology Hospital(Nanjing Maternal and Child Health Hospital)Nanjing 210004Jiangsu ProvinceChina Department of Pediatrics Shenzhen University General HospitalShenzhen 518055Guangdong ProvinceChina Department of Inspection Division Women’s Hospital of Nanjing Medical University(Nanjing Maternity and Child Health Care Hospital)Nanjing 210004Jiangsu ProvinceChina Department of Pediatrics Women’s Hospital of Nanjing Medical University(Nanjing Maternity and Child Health Care Hospital)Nanjing 210004Jiangsu ProvinceChina Department of Neonatology Chenzhou First People’s HospitalChenzhou 423000Hunan ProvinceChina

BACKGROUND This study aimed to identify characteristic gut genera in obese and normal-weight children(8-12 years old)using 16S rDNA *** research aimed to provide insights for mechanistic studies and prevention strategies for childhood *** normal-weight and thirty age-and sex-matched obese children were *** and body measurements were collected,and fecal samples underwent 16S rDNA *** differences in body mass index(BMI)and body-fat percentage were observed between the *** of gut microbiota diversity revealed lowerα-diversity in obese *** in gut microbiota composition were found between the two *** and Firmicutes were more abundant in the obese group,while Bacteroides and Sanguibacteroides were more prevalent in the control *** To identify the characteristic gut genera in obese and normal-weight children(8-12-year-old)using 16S rDNA sequencing,and provide a basis for subsequent mechanistic studies and prevention strategies for childhood *** Thirty each normal-weight,1:1 matched for age and sex,and obese children,with an obese status from 2020 to 2022,were included in the control and obese groups,*** information was collected through questionnaires and body measurements were obtained from both obese and normal-weight *** samples were collected from both groups and subjected to 16S rDNA sequencing using an Illumina MiSeq sequencing platform for gut microbiota diversity *** Significant differences in BMI and body-fat percentage were observed between the two *** Ace and Chao1 indices were significantly lower in the obese group than those in the control group,whereas differences were not significant in the Shannon and Simpson ***-Wallis tests indicated significant differences in unweighted and weighted UniFrac distances between the gut microbiota of normal-weight and obese children(P<0.01),suggest

关键词： Childhood obesity Gut microbiota 16S rDNA sequencing Diversity analysis Genus identification Body mass index

ERβ-activated LINC01018 promotes endometriosis development by regulating the CDC25C/CDK1/CyclinB1 pathway

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Journal of Genetics and Genomics 2024年第6期51卷 617-629页

作者： Ruihui Lu Jingwen Zhu xin Li Cheng Zeng Yan Huang Chao Peng Yingfang Zhou qing Xue Department of Obstetrics and Gynecology Peking University First HospitalBeijing 100034China

Endometriosis refers to as an estrogen-dependent *** receptorβ(ERB),the main estrogen receptor subtype which is encoded by the estrogen receptor 2(ESR2)gene,can mediate the action of estrogen in *** selective estrogen receptor modulators can target the ERβ,they are not specific due to the wide distribution of ERβ.Recently,long noncoding RNAs have been implicated in ***,we aim to explore and validate the downstream regulatory mechanism of ERβ,and to investigate the potential role of long intergenic noncoding RNA 1018(LINC01018)as a nonhormonal treatment for *** study demonstrates that the expression levels of ESR2 and LINCo1018 are increased in ectopic endometrial tissues and reveals a significant positive correlation between the ESR2 and LINCo1018 ***,ERβdirectly binds to an estrogen response element located in the LINCO1018 promoter region and activates LINC01018 ***,ERβcan regulate the CDC25C/CDK1/CyclinB1 pathway and promote ectopic endometrial stromal cell proliferation via LINC01018 in *** with these findings,the knockdown of LINC01018 inhibits endometriotic lesion proliferation in *** summary,our study demonstrates that the ERβ/LINC01018/CDC25C/CDK1/CyclinB1 signaling axis regulates endometriosis progression.

关键词： Estrogen receptorβ Long intergenic noncoding RNA 1018 (LINC01018) Endometriosis Cell cycle Proliferation

Utilization of human excrement in pre-modern China,its theoretical interpretations and ecological significance

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Soil Ecology Letters 2024年第1期6卷 1-5页

作者： xin-Hao du Yuan-Ming Song Ji-An Cai Yong-Guan Zhu Institute for the History of Natural Sciences Chinese Academy of SciencesBeijing 100190China Institute for Cultural Heritage and History of Science&Technology University of Science and Technology BeijingBeijing 100083China Faculty of History Nankai UniversityTianjin 300350China Research Center for Eco Environmental Sciences Chinese Academy of SciencesBeijing 100085China

The use of human excrement as fertilizer is a characteristic of traditional Chinese agriculture..The application of excrement from urban residents in agriculture since the Song Dynasty has ensured the cleanliness and hygiene of *** early as the Ming Dynasty,the Chinese people defined the principle of fertilizing fields with human excrement from the perspective of *** concept Peri-URban ecosystems(PURE)provides inspiration forurban-rural symbiosis regarding *** use of human excrement in fertilization is a major attribute differentiating the Chinese traditional agriculture from the agriculture in other regions around the *** the fact that the exact record showing that human excrement was used as fertilizer in China emerged in the Western Han Dynasty(B.C.202-A.D.8),such records did not become prevalent until the Southern Song Dynasty(A.D.1127-1279).In the Ming and qing eras(A.D.1368-1912),human excrement was even considered"top-class fertilizerand servedas themost essential fertilizerin farmland *** importance of human excrement in the Ming and qing was mainly reflected by farmers'purchase of human excrement from urban *** fertilization practices became increasingly popular during the period,men of letters built a localized theoretical system centering on human *** the use of human excrement had both positive and negative impacts on public health and the ecological environment,the positive overshadowed the negativeas a ***,it is worth pondering on how the utilization of human excrement as an agricultural resource can be improved so that a material cycle system can be rebuilt to re-connect the urban and rural areas.

关键词： excrement fertilizer theorization urban and rural ecology public health

Characterization of local chemical ordering and deformation behavior in high entropy alloys by transmission electron microscopy

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International Journal of Minerals,Metallurgy and Materials 2024年第5期31卷 877-886页

作者： Qiuhong Liu qing du Xiaobin Zhang Yuan Wu Andrey A.Rempel Xiangyang Peng Xiongjun Liu Hui Wang Wenli Song Zhaoping Lü Beijing Advanced Innovation Center for Materials Genome Engineering State Key Laboratory for Advanced Metals and MaterialsUniversity of Science and Technology BeijingBeijing 100083China School of Materials Science and Engineering Ocean University of ChinaQingdao 266100China Institute of Metallurgy of the Ural Branch of the Russian Academy of Sciences Ekaterinburg 620016Russia China Nuclear Power Technology Research Institute Co.Ltd. Shenzhen 518000China Institute of High Energy Physics Chinese Academy of Sciences(CAS)Beijing 100049China Spallation Neutron Source Science Center Dongguan 523803China

Short-range ordering(SRO)is one of the most important structural features of high entropy alloys(HEAs).However,the chemical and structural analyses of SROs are very difficult due to their small size,complexed compositions,and varied *** electron microscopy(TEM)as well as its aberration correction techniques are powerful for characterizing SROs in these compositionally complex *** this short communication,we summarized recent progresses regarding characterization of SROs using TEM in the field of *** using advanced TEM techniques,not only the existence of SROs was confirmed,but also the effect of SROs on the deformation mechanism was ***,the perspective related to application of TEM techniques in HEAs are also discussed.

关键词： high entropy alloys transmission electron microscopy short-range ordering deformation mechanisms