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Comparison of sampling designs for calibrating digital soil maps at multiple depths

Pedosphere 2022年第4期32卷 588-601页

作者： Yakun ZHANG daniel d.saurette Tahmid Huq EASHER Wenjun JI Viacheslav I.AdAMCHUK Asim BISWAS University of Wisconsin-Madison Department of Soil ScienceFD Hole Soils Lab1525 Observatory DriveMadison WI 53706USA School of Environmental Sciences University of Guelph50 Stone Road EastGuelph ON N1G 2W1Canada College of Land Science and Technology China Agricultural UniversityBeijing 100083China department of Bioresource Engineering McGill University21111 Lakeshore RoadSte-Anne-de-Bellevue QC H9X 3V9Canada

digital soil mapping (dSM) aims to produce detailed maps of soil properties or soil classes to improve agricultural management and soil quality assessment. Optimized sampling design can reduce the substantial costs and efforts associated with sampling, profile description, and laboratory analysis. The purpose of this study was to compare common sampling designs for dSM, including grid sampling (GS), grid random sampling (GRS), stratified random sampling (StRS), and conditioned Latin hypercube sampling (cLHS). In an agricultural field (11 ha) in Quebec, Canada, a total of unique 118 locations were selected using each of the four sampling designs (45 locations each), and additional 30 sample locations were selected as an independent testing dataset (evaluation dataset). Soil visible near-infrared (Vis-NIR) spectra were collected in situ at the 148 locations (1 m depth), and soil cores were collected from a subset of 32 locations and subdivided at 10-cm depth intervals, totaling 251 samples. The Cubist model was used to elucidate the relationship between Vis-NIR spectra and soil properties (soil organic matter (SOM) and clay), which was then used to predict the soil properties at all 148 sample locations. digital maps of soil properties at multiple depths for the entire field (148 sample locations) were prepared using a quantile random forest model to obtain complete model maps (CM-maps). Soil properties were also mapped using the samples from each of the 45 locations for each sampling design to obtain sampling design maps (Sd-maps). The Sd-maps were evaluated using the independent testing dataset (30 sample locations), and the spatial distribution and model uncertainty of each Sd-map were compared with those of the corresponding CM-map. The spatial and feature space coverage were compared across the four sampling designs. The results showed that GS resulted in the most even spatial coverage, cLHS resulted in the best coverage of the feature space, and GS and cLHS resu

关键词： 3d digital soil mapping conditioned Latin hypercube sampling grid sampling quantile random forest model stratified random sampling

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determining minimum sample size for the conditioned Latin hypercube sampling algorithm

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Pedosphere 2024年第3期34卷 530-539页

作者： daniel d.saurette Asim BISWAS Richard J.HECK Adam W.GILLESPIE Aaron A.BERG School of Environmental Sciences University of Guelph50 Stone Rd EastGuelph ON N1G 2W1(Canada) Ontario Ministry of Agriculture Food and Rural Affairs1 Stone Rd WestGuelph ON N1G 2Y4(Canada) Geography Environment&GeomaticsUniversity of Guelph50 Stone Rd EastGuelph ON N1G 2W1(Canada)

In digital soil mapping(dSM),a fundamental assumption is that the spatial variability of the target variable can be explained by the predictors or environmental *** to adequately sample the predictors have been well documented,with the conditioned Latin hypercube sampling(cLHS)algorithm receiving the most attention in the dSM *** advances in sampling design,a critical gap remains in determining the number of samples required for dSM *** propose a simple workflow and function coded in R language to determine the minimum sample size for the cLHS algorithm based on histograms of the predictor variables using the Freedman-diaconis rule for determining optimal bin *** preprocessing was included to correct for multimodal and non-normally distributed data,as these can affect sample size determination from the *** on a user-selected quantile range(QR)for the sample plan,the densities of the histogram bins at the upper and lower bounds of the QR were used as a scaling factor to determine minimum sample *** technique was applied to a field-scale set of environmental covariates for a well-sampled agricultural study site near Guelph,Ontario,Canada,and tested across a range of *** results showed increasing minimum sample size with an increase in the QR *** sample size increased from 44 to 83 when the QR increased from 50% to 95% and then increased exponentially to 194 for the 99%*** technique provides an estimate of minimum sample size that can be used as an input to the cLHS algorithm.

关键词： bin width digital soil mapping normal distribution quantile range sampling design

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Amyloid-β-induced disruption of axon-initial-segment mitochondria localization:consequences for TAU missorting in Alzheimer's disease pathology

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Neural Regeneration Research 2025年第5期20卷 1407-1408页

作者： daniel Adam Felix Langerscheidt Hans Zempel Institute of Human Genetics University Hospital CologneCologneGermany Center for Molecular Medicine Cologne(CMMC) University of CologneCologneGermany

TAU is a neuronal microtubule-associated protein preferentially located in *** a battery of neurodegenerative diseases termed"tauopathies,"including Alzheimer's disease (Ad),TAU is missorted and abnormally phosphorylated,leading to filamentous accumulations of hyperphosphorylated TAU,a pathological hallmark and potential disease driver of Ad and related tauopathies (Zempel,2024).

关键词： Alzheimer tau diseases

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Vascular endothelial growth factor:a double-edged sword in the development of white matter lesions

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Neural Regeneration Research 2025年第1期20卷 191-192页

作者： Narek Manukjan daniel Fulton Zubair Ahmed WMatthijs Blankesteijn Sébastien Foulquier department of Pharmacology and Toxicology Maastricht UniversityMaastrichtThe Netherlands CARIM-School for Cardiovascular diseases Maastricht UniversityMaastrichtThe Netherlands Neuroscience and Ophthalmology Institute of Inflammation and AgeingUniversity of BirminghamEdgbastonBirminghamUK Centre for Trauma Sciences Research University of BirminghamEdgbastonBirminghamUK MHeNs-School for Mental Health and Neuroscience Maastricht UniversityMaastrichtThe Netherlands department of Neurology Maastricht University Medical CenterMaastrichtThe Netherlands

As the population ages,the burden of age-related diseases becomes ***,over 55 million people suffer from dementia worldwide,with Alzheimer’s disease being the most common ***,it is becoming clearer that underlying vascular pathology such as cerebral small vessel disease(cSVd)may be a more detrimental cause for dementia(Cuadrado-Godia et al.,2018).It is estimated that 10%-30%of the elderly population and 35%-90%of all dementia patients exhibit signs of *** term cSVd refers to pathology affecting the small vessels of the brain,which can lead to lacunar cerebral infarcts,enlarged perivascular spaces,and cortical hemorrhages(Cuadrado-Godia et al.,2018).CSVd is often associated with cognitive decline,gait problems,and dementia(Cuadrado-Godia et al.,2018).

关键词： pathology becoming white

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Complement-dependent neuroinflammation in spinal cord injury:from pathology to therapeutic implications

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Neural Regeneration Research 2025年第5期20卷 1324-1335页

作者： Hassan Saad Bachar El Baba Ali Tfaily Firas Kobeissy Juanmarco Gutierrez Gonzalez daniel Refai Gerald R.Rodts Christian Mustroph david Gimbel Jonathan Grossberg daniel L.Barrow Matthew F.Gary Ali M.Alawieh department of Neurosurgery Emory University School of MedicineAtlantaGAUSA department of Neurology Yale UniversityNew HavenCTUSA Center for Neurotrauma Multiomics&Biomarkers(CNMB)Morehouse School of MedicineAtlantaGAUSA

Spinal cord injury remains a major cause of disability in young adults,and beyond acute decompression and rehabilitation,there are no pharmacological treatments to limit the progression of injury and optimize recovery in this *** the thorough investigation of the complement system in triggering and propagating cerebral neuroinflammation,a similar role for complement in spinal neuroinflammation is a focus of ongoing *** this work,we survey the current literature investigating the role of complement in spinal cord injury including the sources of complement proteins,triggers of complement activation,and role of effector functions in the *** study relevant data demonstrating the different triggers of complement activation after spinal cord injury including direct binding to cellular debris,and or activation via antibody binding to damage-associated molecular *** effector functions of complement have been implicated in spinal cord injury,and we critically evaluate recent studies on the dual role of complement anaphylatoxins in spinal cord injury while emphasizing the lack of pathophysiological understanding of the role of opsonins in spinal cord *** this pathophysiological review,we systematically review the different translational approaches used in preclinical models of spinal cord injury and discuss the challenges for future translation into human *** review emphasizes the need for future studies to dissect the roles of different complement pathways in the pathology of spinal cord injury,to evaluate the phases of involvement of opsonins and anaphylatoxins,and to study the role of complement in white matter degeneration and regeneration using translational strategies to supplement genetic models.

关键词： complement neuroinflammation neuroplasticity regeneration spinal cord injury targeted therapy

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Regulator of G protein signaling 6 mediates exercise-induced recovery of hippocampal neurogenesis,learning,and memory in a mouse model of Alzheimer’s disease

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Neural Regeneration Research 2025年第10期20卷 2969-2981页

作者： Mackenzie M.Spicer Jianqi Yang daniel Fu Alison N.deVore Marisol Lauffer Nilufer S.Atasoy deniz Atasoy Rory A.Fisher department of Neuroscience and Pharmacology University of Iowa Carver College of MedicineIowa CityIAUSA Iowa Neuroscience Institute University of Iowa Carver College of MedicineIowa CityIAUSA Interdisciplinary Graduate Program in Molecular Medicine University of Iowa Carver College of MedicineIowa CityIAUSA Neural Circuits and Behavior Core University of Iowa Carver College of MedicineIowa CityIAUSA

Hippocampal neuronal loss causes cognitive dysfunction in Alzheimer’s *** hippocampal neurogenesis is reduced in patients with Alzheimer’s *** stimulates adult hippocampal neurogenesis in rodents and improves memory and slows cognitive decline in patients with Alzheimer’s ***,the molecular pathways for exercise-induced adult hippocampal neurogenesis and improved cognition in Alzheimer’s disease are poorly ***,regulator of G protein signaling 6(RGS6)was identified as the mediator of voluntary running-induced adult hippocampal neurogenesis in ***,we generated novel RGS6fl/fl;APP_(SWE) mice and used retroviral approaches to examine the impact of RGS6 deletion from dentate gyrus neuronal progenitor cells on voluntary running-induced adult hippocampal neurogenesis and cognition in an amyloid-based Alzheimer’s disease mouse *** found that voluntary running in APP_(SWE) mice restored their hippocampal cognitive impairments to that of control *** cognitive rescue was abolished by RGS6 deletion in dentate gyrus neuronal progenitor cells,which also abolished running-mediated increases in adult hippocampal *** hippocampal neurogenesis was reduced in sedentary APP_(SWE) mice versus control mice,with basal adult hippocampal neurogenesis reduced by RGS6 deletion in dentate gyrus neural precursor ***6 was expressed in neurons within the dentate gyrus of patients with Alzheimer’s disease with significant loss of these RGS6-expressing ***,RGS6 mediated voluntary running-induced rescue of impaired cognition and adult hippocampal neurogenesis in APP_(SWE) mice,identifying RGS6 in dentate gyrus neural precursor cells as a possible therapeutic target in Alzheimer’s disease.

关键词： adult hippocampal neurogenesis Alzheimer’s disease dentate gyrus exercise learning/memory neural precursor cells regulator of G protein signaling 6(RGS6)

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AddRESSING EQUITY ISSUE IN MULTI-ACTOR POLICYMAKING VIA A SYSTEM-OF-SYSTEMS APPROACH:AVIATION EMISSIONS REdUCTION CASE STUdY

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Journal of Systems Science and Systems Engineering 2011年第1期20卷 1-24页

作者： d.Buyung AGUSdINATA daniel A.dELAURENTIS System-of-Systems Laboratory(SoSL) College of EngineeringPurdue University School of Aeronautics and Astronautics Purdue University

Finding equitable policy solutions is critical for developing sustainable energy *** paper presents a system-of-systems(SoS) formalism for addressing the equity issue in multi-actor *** a SoS,the control of the overall system performance is shared among a network of *** contrast to a single optimal solution that aggregates objectives of actors,the solution concept of iso-performance is formulated and employed to illuminate multiple solutions and hence the ’space’ for actors to *** specifically accounting for the equity issue,the level of sacrifice each actor makes for each iso-performance solution is *** demonstrate the approach,a case study is presented about policymaking to reduce fuel life cycle aviation emissions in the United States based on the year 2020 reduction target,involving government,airlines,jet fuel refinery companies,and aircraft and engine manufacturers.A resource allocation mixed integer programming model is employed to calculate carbon emissions resulting from airlines’ deployment of aircraft fleet to meet changing air transport *** paper discusses three iso-performance solutions;each of them requires a different level of sacrifice from each *** an insight can inform policymaking in determining the magnitude of compensation required when a particular solution is pursued.

关键词： System-of-systems equity multi-actor policymaking iso-performance solutions aviation emissions.

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Vitamin d and calcium signaling in epidermal stem cells and their regeneration

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World Journal of Stem Cells 2020年第7期12卷 604-611页

作者： Yuko Oda daniel d Bikle department of Medicine University of California San FranciscoCA 94158United States Endocrine Research Veterans Affairs Medical Center San FranciscoCA 94158United States

Epidermal stem cells(SCs)residing in the skin play an essential role for epidermal regeneration during cutaneous wound *** injury,distinct epidermal SCs residing in the interfollicular epidermis and/or hair follicles are activated to ***,SCs and progeny migrate,differentiate and restore the *** review a role of the vitamin d signaling through its receptor of vitamin d receptor(Vdr)in these *** conditional knockout(cKO)mouse skin experiences a delay in wound re-epithelialization under low dietary calcium conditions,stimulating our efforts to examine a cooperative role of Vdr with calcium signaling through the calcium sensing receptor in the *** review the role of vitamin d and calcium signaling in different processes essential for injury induced epidermal regeneration during cutaneous wound ***,we discuss their roles in self-renewal of epidermal SCs through β-catenin ***,we describe epidermal remodeling,in which SCs and progeny migrate and differentiate to restore the epidermis,events controlled by the Ecadherin mediated adherens junction ***,we discuss the potential mechanisms for vitamin d and calcium signaling to regulate injury induced epidermal regeneration mutually and interdependently.

关键词： Vitamin d Calcium Stem cells Epidermis Regeneration Wound healing

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Glial cell line-derived neurotrophic factor as a treatment after spinal cord injury

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Neural Regeneration Research 2018年第10期13卷 1733-1734页

作者： stephen d.ortmann daniel j.hellenbrand department of neurological surgery university of wisconsinmadisonwiusa

Spinal cord injury（SCI）is a devastating trauma that currently affects 54 people out of every million,which is approximately 270,000people in the United States（National Spinal Cord Injury Statistical Center,2013）.The effects of such an injury can cause a loss of both motor and sensory function below the injury site,normally leaving the patient unable to care for themselves entirely and relying on family and friends to provide personal *** there are no.

关键词： Glial cell line-derived neurotrophic factor as a treatment after spinal cord injury GFR SCI

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Improved speciation of dissolved organic nitrogen in natural waters: amide hydrolysis with fluorescence derivatization

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Journal of Environmental Sciences 2008年第10期20卷 1273-1280页

作者： Ryan L.Fimmen Tamara d.Trouts daniel d.Richter Jr. dharni Vasudevan School of Earth Sciences The Ohio State University 125 S.Oval MallColumbus OH 43210 USA.Nicholas School of the Environment and Earth Sciences Duke University Durham NC 27708 USA School of Earth Sciences The Ohio State University 125 S.Oval MallColumbus OH 43210 USA Nicholas School of the Environment and Earth Sciences Duke UniversityDurham NC 27708 USA. Nicholas School of the Environment and Earth Sciences Duke UniversityDurham NC 27708 USA.Department of Chemistry Bowdoin CollegeBrunswick ME 04011 USA

The objective of this study was to improve primary-amine nitrogen (1°-N) quantification in dissolved organic matter (dOM) originating from natural waters where inorganic forms of N, which may cause analytical interference, are commonly encountered. Efforts were targeted at elucidating organic-N structural criteria influencing the response of organic amines to known colorimetric and fluorescent reagents and exploring the use of divalent metal-assisted amide hydrolysis in combination with fluorescence analyse...

关键词： dissolved organic matter/nitrogen (dOM/dON) o-phthaldialdehyde fluorescamine ninhydrin amino acids amide hydrolysis peptides

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