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Pistachio genomes provide.insights into nut tree domestication and ZW sex chromosome evolution

Plant Communications 2023年第3期4卷 80-98页

作者： Salih Kafkas Xiaokai Ma Xingtan Zhang Hayat Topc¸u Rafael Navajas-Pérez Ching Man Wai Haibao Tang Xuming Xu Mortaza Khodaeiaminjan murat Güney Aibibula Paizila Harun Karcı Xiaodan Zhang Jing Lin Han Lin Roberto de.la Herrán Carmelo Ruiz Rejón Jerson Alexande. García-Zea Francisca Robles coral de. val muñoz Agnes Hotz-Wagenblatt Xiangjia Jack Min HakanÖzkan Elmira Ziya Motalebipour Hatice Gozel Nergiz C¸oban Nesibe Ebru Kafkas Andrej Kilian HuaXing Huang Xuanrui Lv Kunpeng Liu Qilin Hu Ewelina Jacygrad William Palmer Richard Michelmore Ray Ming de.artment of Horticulture Faculty of AgricultureUniversity of C¸ukurovaAdana 01330Turkey Center for Genomics and Biotechnology Haixia Institute of Science and TechnologySchool of Future TechnologyFujian Agriculture and Forestry UniversityFuzhouChina Key Laboratory of Orchid Conservation and Utilization of National Forestry and Grassland Administration Fujian Agriculture and Forestry UniversityFuzhouChina de.artamento de.Genética Facultad de CienciasCampus de Fuentenueva s/n18071 GranadaSpain de.artment of Plant Biology University of Illinois at Urbana-ChampaignUrbanaIL 61801USA Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems College of the Environment and EcologyXiamen UniversityXiamen 361102China de.artment of Computer Science University of GranadaGranadaSpain Andalusian Research Institute in Data Science and Computational Intelligence(DaSCI Institute) 18014 GranadaSpain German Cancer Research Center Omics IT and Data Management Core FacilityHeidelbergGermany de.artment of Biological Sciences Youngstown State UniversityYoungstownOH 44555USA de.artment of Field Crops Faculty of AgricultureUniversity of C¸ukurovaAdana 01330Turkey Pistachio Research Institute SxahinbeyGaziantep 27060Turkey Diversity Arrays Technology University of CanberraCanberraACTAustralia Genome Center University of California Davis451 Health Sciences DriveDavisCA 95616USA

Pistachio is a nut crop domesticated in the Fertile Crescent and a dioecious species with ZW sex *** sequenced the genomes of Pistacia vera cultivar(cv.)Siirt,the female parent,and *** ***,the male *** chromosome-level reference genomes of pistachio were generated,and Z and W chromosomes were *** ZW chromosomes originated from an autosome following the first inversion,which occurred approximately 8.18 *** inversion events in the W chromosome led to the formation of a 12.7-Mb(22.8%of the W chromosome)non-recombining *** W-specific sequences contain several genes of interest that may have played a pivotal role in sex de.ermination and contributed to the initiation and evolution of a ZW sex chromosome system in *** W-specific genes,including de.A,de.A-like,DYT1,two PTEN1,and two tande. duplications of six VPS13A paralogs,are strong candidates for sex de.ermination or *** history analysis of resequenced genomes suggest that cultivated pistachio unde.went severe domestication bottlenecks approximately 7640 years ago,dating the domestication event close to the archeological record of pistachio domestication in *** ide.tified 390,211,and 290 potential selective sweeps in 3 cultivar subgroups that unde.lie agronomic traits such as nut de.elopment and quality,grafting success,flowering time shift,and drought *** findings have improved our unde.standing of the genomic basis of sex de.ermination/differentiation and horticulturally important traits and will accelerate the improvement of pistachio cultivars and rootstocks.

关键词： Pistacia vera pistachio sequencing reference genome sex chromosome domestication

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A Comprehensive Bioinformatics Analysis of the Lipoxygenases Superfamily in Shewanella Woodyi Strain （Strain ATCC 519081MS32）

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材料科学与工程（中英文B版） 2014年第2期4卷 34-41页

作者： Silvana Pompeia val-Moraes Eliana Gertrude. de.Macedo Lemos University of Estadual Paulista UNESP/FCAV Department Technology LBMP Via de Acesso Prof. Paulo Donato Castellane s/n.Jabotieabal Sao Paulo Brazil

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