Pistachio genomes provide insights into nut tree domestication and ZW sex chromosome evolution
作者机构：Department of HorticultureFaculty of AgricultureUniversity of C¸ukurovaAdana 01330Turkey Center for Genomics and BiotechnologyHaixia Institute of Science and TechnologySchool of Future TechnologyFujian Agriculture and Forestry UniversityFuzhouChina Key Laboratory of Orchid Conservation and Utilization of National Forestry and Grassland AdministrationFujian Agriculture and Forestry UniversityFuzhouChina Departamento de GenéticaFacultad de CienciasCampus de Fuentenueva s/n18071 GranadaSpain Department of Plant BiologyUniversity of Illinois at Urbana-ChampaignUrbanaIL 61801USA Key Laboratory of the Ministry of Education for Coastal and Wetland EcosystemsCollege of the Environment and EcologyXiamen UniversityXiamen 361102China Department of Computer ScienceUniversity of GranadaGranadaSpain Andalusian Research Institute in Data Science and Computational Intelligence(DaSCI Institute)18014 GranadaSpain German Cancer Research CenterOmics IT and Data Management Core FacilityHeidelbergGermany Department of Biological SciencesYoungstown State UniversityYoungstownOH 44555USA Department of Field CropsFaculty of AgricultureUniversity of C¸ukurovaAdana 01330Turkey Pistachio Research InstituteSxahinbeyGaziantep 27060Turkey Diversity Arrays TechnologyUniversity of CanberraCanberraACTAustralia Genome CenterUniversity of California Davis451 Health Sciences DriveDavisCA 95616USA
出 版 物：《Plant Communications》 (植物通讯（英文）)
年 卷 期：2023年第4卷第3期
页 面：80-98页
核心收录：
学科分类：0710[理学-生物学] 09[农学] 0902[农学-园艺学] 090201[农学-果树学]
基 金：the Scientific and Technological Research Council of Turkey(project nos.TUBITAK-TOVAG 100 O 113 and TUBITAK-TOVAG 113 O 962) the University of C¸ukurova Scientific Research Projects Unit(project nos.FDK-2015-3641,FDK-2015-3642,FBA-2015-4521,FBA-2015-4538,FBA-2016-5406,FBA-2016-5442,FBA-2016-5407,FDK-2017-9232,FBA-2017-8250,and FBA-2020-11957) the Ministerio de Ciencia e Innovacio´n of Spain(project nos.AGL2009-09094 and RYC-2011-08653) the University of Granada(project no.PP2016-PIP13),the Natural Science Foundation of Fujian Province,China(project nos.2021J01142 and 2018J01606)
主 题：Pistacia vera pistachio sequencing reference genome sex chromosome domestication
摘 要：Pistachio is a nut crop domesticated in the Fertile Crescent and a dioecious species with ZW sex *** sequenced the genomes of Pistacia vera cultivar(cv.)Siirt,the female parent,and *** ***,the male *** chromosome-level reference genomes of pistachio were generated,and Z and W chromosomes were *** ZW chromosomes originated from an autosome following the first inversion,which occurred approximately 8.18 *** inversion events in the W chromosome led to the formation of a 12.7-Mb(22.8%of the W chromosome)non-recombining *** W-specific sequences contain several genes of interest that may have played a pivotal role in sex determination and contributed to the initiation and evolution of a ZW sex chromosome system in *** W-specific genes,including defA,defA-like,DYT1,two PTEN1,and two tandem duplications of six VPS13A paralogs,are strong candidates for sex determination or *** history analysis of resequenced genomes suggest that cultivated pistachio underwent severe domestication bottlenecks approximately 7640 years ago,dating the domestication event close to the archeological record of pistachio domestication in *** identified 390,211,and 290 potential selective sweeps in 3 cultivar subgroups that underlie agronomic traits such as nut development and quality,grafting success,flowering time shift,and drought *** findings have improved our understanding of the genomic basis of sex determination/differentiation and horticulturally important traits and will accelerate the improvement of pistachio cultivars and rootstocks.
维普期刊数据库