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Investigating species boundaries in Colletotrichum

Fungal Diversity 2021年第2期107卷 107-127页

作者： chitrabhanu s.bhunjun Chayanard Phukhamsakda Ruvishika s.Jayawardena Rajesh Jeewon Itthayakorn Promputtha Kevin D.Hyde Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand school of science Mae Fah Luang UniversityChiang Rai 57100Thailand Institute of Plant Protection College of AgricultureJilin Agricultural UniversityChangchun 130118JilinPeople’s Republic of China Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi Jilin Agricultural UniversityChangchun 130118JilinPeople’s Republic of China Department of Health sciences Faculty of Medicine and Health SciencesUniversity of MauritiusReduitMauritius Department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand

Colletotrichum is one of the most important plant pathogenic genera that is responsible for numerous diseases which can have a profound impact on the agricultural *** delineation is difficult due to a lack of distinctive phenotypic ***,in this study three different genomic approaches based on phylogenetic,evolutionary and coalescent-based methods are applied to establish robust species *** reliability of five different DNA barcodes was also assessed to provide further insights into species *** ITs region can resolve the placement of taxa up to the species complex *** GAPDH and TUB2 markers are determined to be the most informative for most ***,no single marker could discriminate between species in all complexes,therefore different molecular approaches based on multi-locus datasets are *** is the first study to provide an estimated divergence time for all species complexes in *** estimated divergence time for species complexes ranged between 4.8 to 32.2 *** on the high level of congruent results obtained from the different molecular approaches,a new species complex,the Colletotrichum agaves complex is *** complex consists of five taxa which are characterised by the presence of straight or slightly curved conidia with obtuse *** study shows that coalescent approaches and multi-locus phylogeny are crucial to establish species boundaries in *** taxonomic placement of three singleton taxa Colletotrichum axonopodi,*** and *** is *** accept 248 species and provide recommendations regarding species boundaries in the graminicola-caudatum complex.

关键词： BEAsT General mixed yule coalescent method Glomerellaceae Multi-rate poisson tree process sordariomycetes Taxonomy

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A polyphasic approach to delineate species in Bipolaris

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Fungal Diversity 2020年第3期102卷 225-256页

作者： chitrabhanu s.bhunjun Yang Dong Ruvishika s.Jayawardena Rajesh Jeewon Chayanard Phukhamsakda Digvijayini Bundhun Kevin D.Hyde Jun sheng state Key Laboratory for Conservation and Utilization of Bio‑Resources in Yunnan Yunnan Agricultural UniversityKunming 650201People’s Republic of China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand school of science Mae Fah Luang UniversityChiang Rai 57100Thailand Yunnan Research Institute for Local Plateau Agriculture and Industry Kunming 650201People’s Republic of China Department of Health sciences Faculty of ScienceUniversity of MauritiusReduitMauritius Department of Entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50002Thailand Institute of Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China Centre for Mountain Futures Kunming Institute of BotanyKunming 650201YunnanPeople’s Republic of China

Bipolaris species are important plant pathogens with a worldwide distribution in tropical and temperate *** recognition in Bipolaris has been problematic due to a lack of molecular data from ex-type cultures,the use of few gene regions for species resolution and overlapping morphological *** this study,we evaluate the efficiency of different DNA barcodes in species delimitation in Bipolaris by phylogenetic analyses,Automatic Barcode Gap Discovery and Objective *** is determined to be the best single marker for the *** approaches are used to clarify the taxonomic placement of all sequences currently named as Bipolaris in GenBank based on ITs and GAPDH gene sequence *** checking various publications,we found that the majority of new host records of fungal species published in the Plant Disease journal from 2010 to 2019 were based on BLAsT searches of the ITs sequences and up to 82%of those records could be ***,relying on BLAsT searches from GenBank to name species is not *** boards of journals and reviewers of new record papers should be aware of this *** naming Bipolaris species,whether new or known,it is recommended to perform phylogenetic analyses based on GAPDH using the correct taxon sampling for accurate results and the species relationship should have reliable statistical *** least two new species are represented by molecular data in GenBank and we provide an updated taxonomic revision of *** accept 45 species in Bipolaris and notes are provided for all the species including hosts and geographic distribution.

关键词： Classification DNA barcoding Dothideomycetes Integrative taxonomy Pairwise differences Pleosporales

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What are fungal species and how to delineate them?

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Fungal Diversity 2021年第4期109卷 1-25页

作者： K.W.Thilini Chethana Ishara s.Manawasinghe V.G.Hurdeal chitrabhanu s.bhunjun M.A.Appadoo Eleni Gentekaki Olivier Raspé Itthayakorn Promputtha Kevin D.Hyde Innovative institute for plant health zhongkai university of agriculture and engineeringguangzhou 510225people’s republic of china center of excellence in fungal research mae fah luang universitychiang rai 57100thailand school of science mae fah luang universitychiang rai 57100thailand department of biology faculty of sciencechiang mai universitychiang mai 50200thailand

This is the opening paper in the special issue of Fungal Diversity,which collates the data on defining *** and recognizing species has long been a controversial *** Darwin’s proposed origin of species,over 30 species criteria have been brought forth and used to define species *** recent times,phylogenetic analyses based on multiple loci have been extensively used as a method to define species ***,only a few mycologists are aware that phylogenetic species criteria can mask discordances among fungal groups,leading to inaccurately defined species *** the current review,we discuss species recognition criteria,how and where these criteria can be applied along with their limitations and derived *** order to delimit fungal species,authors need to take into account not only the phylogenetic and phenotypic coherence,but also the timing of events that lead to fungal speciation and subsequent *** in the rate of phenotypic diversifications and convergent fungal evolution make it difficult to establish a universal species recognition *** best practice can only be defined in the context of each fungal *** this review,we provide a set of guidelines,encouraging an integrative taxonomic approach for species delimitation that can be used to define fungal species boundaries in the *** other papers in this special issue deal with fungal speciation in Ascomycota,Dothideomycetes,Basidiomycota,basal fungi,lichen-forming fungi,plant pathogenic fungi,and yeasts.

关键词： Allopatry speciation species concepts species criteria species recognition sympatry

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What is a species in fungal plant pathogens?

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Fungal Diversity 2021年第4期109卷 239-266页

作者： Ruvishika s.Jayawardena Kevin D.Hyde Antonio Roberto Gomes de Farias chitrabhanu s.bhunjun Himashi s.Ferdinandez Dimuthu s.Manamgoda Dhanushka Udayanga Indunil s.Herath Kasun M.Thambugala Ishara s.Manawasinghe Achala J.Gajanayake Binu C.samarakoon Digvijayini Bundhun Deecksha Gomdola Naruemon Huanraluek Ya-ru sun Xia Tang Itthayakorn Promputtha Marco Thines Innovative Institute of Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Departamento de Genética Universidade Federal de PernambucoAv.Prof.Moraes Rego1235Cidade UniversitáriaRecifePE 50670-901Brazil Department of Botany Faculty of Applied SciencesUniversity of Sri JayewardenepuraNugegodaSri Lanka Department of Biosystems Technology Faculty of TechnologyUniversity of Sri JayewardenepuraPitipanaHomagama 10200Sri Lanka Genetics and Molecular Biology Unit Faculty of Applied SciencesUniversity of Sri JayewardenepuraGangodawilaNugegodaSri Lanka school of science Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Department of Biological sciences Institute of EcologyEvolution and DiversityGoethe UniversityMax-von-Laue-Str.1360486 Frankfurt am MainGermany senckenberg Biodiversity and Climate Research Centre Senckenberganlage 2560325 Frankfurt am MainGermany

scientific names are crucial for communicating knowledge concerning fungi and fungus-like *** plant pathology,they link information regarding biology,host range,distribution and potential risk to agriculture and food *** the past,delimitation among pathogenic taxa was primarily based on morphological *** to distinct species sharing overlapping characteristics,the morphological identification of species is often neither straightforward nor ***,the phylogenetic species concept based on molecular phylogenetic reconstructions gained *** present opinion discusses what a fungal species is and how identification of species in plant pathology has changed over the past *** this context,host-specialization and species complexes are ***,species concepts in plant pathology are examined using case studies from Bipolaris,Colletotrichum,Curvularia,Diaporthe,Diplodia,Meliola,Plasmopara,rust fungi and *** entry contains a brief introduction to the genus,concepts used in species identification so far and the problems in describing a species followed by *** importance of correctly naming and identifying a species is addressed in the context of recent introductions,and we also discuss whether the introduction of new species in pathogenic genera has been *** also provide guidelines to be considered when introducing a new species in a plant pathogenic genus.

关键词： Dual nomenclature Host-specificity Polyphasic approach Pathology Phylogeny species delimitation systematics

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Microfungi associated with Clematis(Ranunculaceae)with an integrated approach to delimiting species boundaries

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Fungal Diversity 2020年第3期102卷 1-203页

作者： Chayanard Phukhamsakda Eric H.C.McKenzie Alan J.L.Phillips E.B.Gareth Jones D.Jayarama Bhat stadler Marc chitrabhanu s.bhunjun Dhanushka N.Wanasinghe Benjarong Thongbai Erio Camporesi Damien Ertz Ruvishika s.Jayawardena Rekhani Hansika Perera Anusha H.Ekanayake saowaluck Tibpromma Mingkwan Doilom Jianchu Xu Kevin D.Hyde Institute of Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201YunnanPeople’s Republic of China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Landcare Research Manaaki Whenua Private Bag 92170AucklandNew Zealand University of Lisbon Faculty of SciencesBiosystems and Integrative Sciences Institute(BioISI)Campo Grande1749‑016 LisbonPortugal Mushroom Research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Mai 50150Thailand Department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand state Key Laboratory for Conservation and Utilization of East and Central Asia Regional Office World Agroforestry Centre(ICRAF)Kunming 650201YunnanPeople’s Republic of China 33B st.Edwards Road southsea Hants Hampshire PO53DHUK Department of Botany and Microbiology College of ScienceKing Saud UniversityP.O Box 2455Riyadh 11451Kingdom of Saudi Arabia A.M.B.Gruppo Micologico Forlivese“Antonio Cicognani”Viale Roma 1847121 ForliItaly A.M.B Circolo Micologico“Giovanni Carini”C.P.10125121 BresciaItaly societáper gli studi Naturalistici della Romagna C.P.14348012 BagnacavalloRAItaly No.128/1-J Azad Housing SocietyCurcaP.O.Goa Velha403108India Center for Yunnan Plateau Biological Resources Protection and Utilization College of Biological Resource and Food EngineeringQujing Normal UniversityQujingYunnan 655011People’s Republic of China Department of Microbial Drugs Helmholtz Centre for Infection Research and German Centre for Infection Research(DZIF)partner site Hannover/BraunschweigInhoffenstrasse 738124 BrunswickGermany Department of Research Meise Botanic Garden1860 MeiseBelgium Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyangGuizhou Province 550006People’s Repu

The cosmopolitan plant genus Clematis contains many climbing species that can be found *** genus occurs in the wild and is grown commercially for *** on Clematis were collected from Belgium,China,Italy,Thailand and the *** are characterized by morphology and analyses of gene sequence data using an integrated species concept to validate *** study revealed two new families,12 new genera,50 new species,26 new host records with one dimorphic character report,and ten species are transferred to other *** new families revealed by multigene phylogeny are Longiostiolaceae and Pseudomassarinaceae in Pleosporales(Dothideomycetes).New genera are Anthodidymella(Didymellaceae),Anthosulcatispora and Parasulcatispora(sulcatisporaceae),Fusiformispora(Amniculicolaceae),Longispora(Phaeosphaeriaceae),Neobyssosphaeria(Melanommataceae),Neoleptosporella(Chaetosphaeriales,genera incertae sedis),Neostictis(stictidaceae),Pseudohelminthosporium(Neomassarinaceae),Pseudomassarina(Pseudomassarinaceae),sclerenchymomyces(Leptosphaeriaceae)and Xenoplectosphaerella(Plectosphaerellaceae).The newly described species are Alloleptosphaeria clematidis,Anthodidymella ranunculacearum,Anthosulcatispora subglobosa,Aquadictyospora clematidis,Brunneofusispora clematidis,Chaetosphaeronema clematidicola,***,Chromolaenicola clematidis,Diaporthe clematidina,Dictyocheirospora clematidis,Distoseptispora clematidis,Floricola clematidis,Fusiformispora clematidis,Hermatomyces clematidis,Leptospora clematidis,Longispora clematidis,Massariosphaeria clematidis,Melomastia clematidis,***,Neobyssosphaeria clematidis,Neoleptosporella clematidis,Neoroussoella clematidis,***,Neostictis nigricans,Neovaginatispora clematidis,Parasulcatispora clematidis,Parathyridaria clematidis,***,***,Periconia verrucose,Phomatospora uniseriata,Pleopunctum clematidis,Pseudocapulatispora clematidis,Pseudocoleophoma clematidis,Pseudohelminthos

关键词： 73 new taxa Ascomycota Belgium China Dothideomycetes Incertae sedis Italy Lecanoromycetes Phylogeny sordariomycetes Taxonomy Thailand UK

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The numbers of fungi: is the descriptive curve flattening?

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Fungal Diversity 2020年第4期103卷 219-271页

作者： Kevin D.Hyde Rajesh Jeewon Yi-Jyun Chen chitrabhanu s.bhunjun Mark s.Calabon Hong-Bo Jiang Chuan-Gen Lin Chada Norphanphoun Phongeun sysouphanthong Dhandevi Pem saowaluck Tibpromma Qian Zhang Mingkwan Doilom Ruvishika s.Jayawardena Jian-Kui Liu sajeewa s.N.Maharachchikumbura Chayanard Phukhamsakda Rungtiwa Phookamsak Abdullah M.Al-sadi Naritsada Thongklang Yong Wang Yusufjon Gafforov E.B.Gareth Jones saisamorn Lumyong Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Innovative Institute of Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China CAs Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China school of science Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Health sciences Faculty of ScienceUniversity of MauritiusReduitMauritius East and Central Asia Regional Office World Agroforestry Centre(ICRAF)Kunming 650201YunnanPeople’s Republic of China Center for Mountain Futures Kunming Institute of BotanyKunming 650201YunnanPeople’s Republic of China Ecology Division Biotechnology and Ecology InstituteMinistry of Science and TechnologyP.O.Box:2279VientianeLao PDR Honghe Innovation Center for Mountain Futures Kunming Institute of BotanyChinese Academy of SciencesHonghe County 654400YunnanPeople’s Republic of China Department of Plant Pathology College of AgricultureGuizhou UniversityGuiyang 550025GuizhouPeople’s Republic of China school of Life science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Research Center of Microbial Diversity and sustainable Utilization Faculty of SciencesChiang Mai UniversityChiang Mai 50200Thailand Department of Crop sciences College of Agricultural and Marine SciencesSultan Qaboos UniversityP.O.Box 34Al khoud123 MuscatOman Laboratory of Mycology Institute of BotanyAcademy of Sciences of the Republic of Uzbekistan32 Durmon Yuli StreetTashkent 100125Uzbekistan Department of Ecology Andijan State University129 Universitet StreetAndijan 170100Uzbekistan Department of Botany and Microbiology College of ScienceKing Saud UniversityP.O Box 2455Riyadh 11451Kingdom of Saudi A

The recent realistic estimate of fungal numbers which used various algorithms was between 2.2 and 3.8 *** are nearly 100,000 accepted species of Fungi and fungus-like taxa,which is between 2.6 and 4.5%of the estimated *** forums such as Botanica Marina series,Fungal Diversity notes,Fungal Biodiversity Profiles,Fungal systematics and Evolution-New and Interesting Fungi,Mycosphere notes and Fungal Planet have enhanced the introduction of new taxa and nearly 2000 species have been introduced in these publications in the last *** need to define a fungal species more accurately has been recognized,but there is much research needed before this can be better *** address the evidence that is needed to estimate the numbers of fungi and address the various advances that have been made towards its *** genera are barely known,whereas some plant pathogens comprise numerous species complexes and numbers are steadily *** this paper,we examine ten genera as case studies to establish trends in fungal description and introduce new species in each *** genera are the ascomycetes Colletotrichum and Pestalotiopsis(with many species or complexes),Atrocalyx,Dothiora,Lignosphaeria,Okeanomyces,Rhamphoriopsis,Thozetella,Thyrostroma(rela-tively poorly studied genera)and the basidiomycete genus *** provide examples where knowledge is incomplete or lacking and suggest areas needing further *** include(1)the need to establish what is a species,(2)the need to establish how host-specific fungi are,not in highly disturbed urban areas,but in pristine or relatively undisturbed forests,and(3)the need to establish if species in different continents,islands,countries or regions are different,or if the same fungi occur worldwide?Finally,we conclude whether we are anywhere near to flattening the curve in new species description.

关键词： 11 new taxa Atrocalyx Colletotrichum Dothiora fungal numbers Host-specificity Lepiota Lignosphaeria Okeanomyces Pestalotiopsis Rhamphoriopsis Thozetella Thyrostroma

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The numbers of fungi:contributions from traditional taxonomic studies and challenges of metabarcoding

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Fungal Diversity 2022年第3期114卷 327-386页

作者： Chayanard Phukhamsakda Rolf Henrik Nilsson chitrabhanu s.bhunjun Antonio Roberto Gomes de Farias Ya-Ru sun subodini N.Wijesinghe Mubashar Raza Dan-Feng Bao Li Lu saowaluck Tibpromma Wei Dong Danushka s.Tennakoon Xing-Guo Tian Yin-Ru Xiong samantha C.Karunarathna Lei Cai Zong-Long Luo Yong Wang Ishara s.Manawasinghe Erio Camporesi Paul M.Kirk Itthayakorn Promputtha Chang-Hsin Kuo Hong-Yan su Mingkwan Doilom Yu Li Yong-Ping Fu Kevin D.Hyde Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi Jilin Agricultural UniversityChangchun 130118JilinPeople’s Republic of China College of Plant Protection Jilin Agricultural UniversityChangchun 130118JilinPeople’s Republic of China Gothenburg Global Biodiversity Centre 40530 GothenburgSweden Department of Biological and Environmental sciences University of GothenburgBox 46140530 GothenburgSweden Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand school of science Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Plant Pathology College of AgricultureGuizhou UniversityGuiyang 550025GuizhouPeople’s Republic of China state Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing 100101People’s Republic of China College of Agriculture and Biological sciences Dali UniversityDali 671003YunnanPeople’s Republic of China Department of Entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand Centre for Mountain Futures Kunming Institute of BotanyKunming 650201YunnanPeople’s Republic of China Center for Yunnan Plateau Biological Resources Protection and Utilization College of Biological Resource and Food EngineeringQujing Normal UniversityQujing 655011YunnanPeople’s Republic of China Innovative Institute for Plant Health Zhongkai University of Agriculture and EngineeringGuangzhou 510225People’s Republic of China Department of Plant Medicine National Chiayi University300 Syuefu RoadChiayi City 60004Taiwan school of Food and Pharmaceutical Engineering Guizhou Institute of TechnologyGuiyang 550003People’s Republic of China CAs Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201People’s Republic of China A.M.B.Gruppo Micologico Forlivese“Antonio Cicognani”Via Roma 18ForlìItaly A.M.B Circolo Micologico“Giovanni Carini”C.P.314 BresciaItaly

The global diversity of fungi has been estimated using several different *** is somewhere between 2–11 million estimated species,but the number of formally described taxa is around 150,000,a tiny fraction of the *** this paper,we examine 12 ascomycete genera as case studies to establish trends in fungal species descriptions,and introduce new species in each *** highlight the importance of traditional morpho-molecular methods in publishing new species,we introduce novel taxa in 12 genera that are considered to have low species *** discuss whether the species are likely to be rare or due to a lack of extensive sampling and *** genera are Apiospora,Bambusicola,Beltrania,Capronia,Distoseptispora,Endocalyx,Neocatenulostroma,Neodeightonia,Paraconiothyrium,Peroneutypa,Phaeoacremonium and *** discuss host-specificity in selected genera and compare the number of species epithets in each genus with the number of ITs(barcode)sequences deposited in GenBank and *** furthermore discuss the relationship between the divergence times of these genera with those of their *** hypothesize whether there might be more species in these genera and discuss hosts and habitats that should be investigated for novel species discovery.

关键词： 12 new taxa Ascomycota Fungal diversity Fungal numbers High-throughput sequencing Host-specificity

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The numbers of fungi:are the most speciose genera truly diverse?

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Fungal Diversity 2022年第3期114卷 387-462页

作者： chitrabhanu s.bhunjun Tuula Niskanen Nakarin suwannarach Nopparat Wannathes Yi-Jyun Chen Eric H.C.McKenzie sajeewa s.N.Maharachchikumbura Bart Buyck Chang-Lin Zhao Yu-Guang Fan Jing-Yi Zhang Asha J.Dissanayake Diana s.Marasinghe Ruvishika s.Jayawardena Jaturong Kumla Mahajabeen Padamsee Ya-Ya Chen Kare Liimatainen Joseph F.Ammirati Chayanard Phukhamsakda Jian-Kui Liu Wiphawanee Phonrob Émile Randrianjohany sinang Hongsanan Ratchadawan Cheewangkoon Digvijayini Bundhun surapong Khuna Wen-Jie Yu Lun-sha Deng Yong-Zhong Lu Kevin D.Hyde saisamorn Lumyong Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand school of science Mae Fah Luang UniversityChiang Rai 57100Thailand Jodrell Laboratory Royal Botanic GardensKewSurrey TW93ABUK Department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Research Center of Microbial Diversity and sustainable Utilization Chiang Mai UniversityChiang Mai 50200Thailand Microbiology Program Faculty of Science and TechnologyPibulsongkram Rajabhat UniversityPhitsanulok 65000Thailand Manaaki Whenua-Landcare Research Private Mail Bag 92170AucklandNew Zealand school of Life science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Institut de systématique EvolutionBiodiversité(ISYEB)Muséum National d’Histoire naturelleCNRSSorbonne UniversitéEPHEUniversitédes Antilles57 rue CuvierCP 3975231 Paris cedex 05France College of Biodiversity Conservation Southwest Forestry UniversityKunming 650224People’s Republic of China Key Laboratory of Tropical Translational Medicine of Ministry of Education Tropical Environment and Health LaboratoryCollege of PharmacyHainan Medical UniversityHaikou 571199People’s Republic of China Institute of Crop Germplasm Resources Guizhou Academy of Agricultural SciencesGuiyang 550006People’s Republic of China Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006People’s Republic of China school of Food and Pharmaceutical Engineering Guizhou Institute of TechnologyGuiyang 550003People’s Republic of China Centre National de Recherche sur l’Environnement(CNRE) BP 1739Laboratoire de Microbiologie de l’Environnement(LME)AntananarivoMadagascar Department of Biology University of WashingtonBox 351800SeattleWA 98195-1800USA College of Plant Protection Jilin Agricultural UniversityChangchun 130118JilinPeople’s Republic of China Engineering Research Center of Chinese Ministry of Education for Edible and

Fungi play vital roles in ecosystems as endophytes,pathogens and *** current estimate of fungal diversity is highly uncertain,ranging from 1.5 to 12 million,but only around 150,000 species have been named and classified to *** the introduction of DNA based methods for species identification,the number of newly described taxa has increased from approximately 1000 to around 2000 *** demonstrates the importance of DNA based methods to identify and distin-guish species,especially cryptic *** novel species from recent studies have been found in historically understudied regions and habitats,but these still represent only a small percentage of the estimated *** this paper,we examine 16 genera from the top 40 most speciose genera as listed in species Fungorum as case studies to examine the diversity of taxa in each *** genera treated herein are Cercospora,Diaporthe,Meliola,Passalora,Phyllachora,Phyllosticta,Pseudocer-cospora,Ramularia(ascomycetes)and Cortinarius,Entoloma,Inocybe,Marasmius,Psathyrella,Puccinia,Russula,Uromyces(basidiomycetes).We critically evaluate the number of species in these genera and correlate these numbers with the number of entries in *** introduce 18 new species Apiospora multiloculata,Candolleomyces thailandensis,Cortinarius acutoproximus,Cortinarius melleoalbus,Cortinarius pacificus,Cortinarius parvoacetosus,Diaporthe guizhouensis,Entoloma pseudosubcorvinum,Inocybe meirensongia,Marasmius albulus,Marasmius obscuroaurantiacus,Meliola camporesii,Phyl-lachora siamensis,Phyllosticta doitungensis,Picipes yuxiensis,Pseudocercospora vignae,Puccinia maureanui and Russula *** also introduce a new record of Candolleomyces cladii-marisci and Inocybe *** discuss the genera Colletotrichum and Pleurotus that are speciose,but do not occur in the top *** hypothesize whether there might be more species in these genera and discuss why these genera have some of the largest number of specie

关键词： 18 new taxa Ascomycota Basidiomycota Fungal diversity Host-specificity Taxonomy

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One stop shop IV: taxonomic update with molecular phylogeny for important phytopathogenic genera: 76-100 (2020)

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Fungal Diversity 2020年第4期103卷 87-218页

作者： Ruvishika s.Jayawardena Kevin D.Hyde Yi Jyun Chen Viktor Papp Balázs Palla Dávid Papp chitrabhanu s.bhunjun Vedprakash G.Hurdeal Chanokned senwanna Ishara s.Manawasinghe Dulanjalee L.Harischandra Ajay Kumar Gautam shubhi Avasthi Boontiya Chuankid Ishani D.Goonasekara sinang Hongsanan XiangYu Zeng Kapila K.Liyanage NingGuo Liu Anuruddha Karunarathna Kalani K.Hapuarachchi Thatsanee Luangharn Olivier Raspé Rashika Brahmanage Mingkwan Doilom Hyang B.Lee Liu Mei Rajesh Jeewon Naruemon Huanraluek Napalai Chaiwan Marc stadler Yong Wang Department of Plant Pathology Agriculture CollegeGuizhou UniversityGuiyang 550025GuizhouChina Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang RaiThailand Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201People’s Republic of China Department of Botany Szent István UniversityVillányiút 29-43Budapest 1118Hungary Plant Pathology and Plant-Microbe Biology section Cornell UniversityGenevaNY 614456USA Department of Pomology Szent István UniversityVillányiút 29-43Budapest 1118Hungary school of science Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityNo.9 of ShuguanghuayuanzhongluChiang Mai 50200Thailand Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesHaidian DistrictHaidian DistrictBeijing 100097People’s Republic of China school of Agriculture Abhilashi UniversityMandiHimachal Pradesh 175028India school of studies in Botany Jiwaji UniversityGwalior 474011India Guangdong Provincial Key Laboratory for Plant Epigenetics College of Life Sciences and OceanographyShenzhen UniversityShenzhen 518055PR China Environmental Microbiology Lab Dept.of Agricultural Biological ChemistryCollege of Agriculture and Life SciencesChonnam National UniversityGwangju 61186Korea Department of Health sciences Faculty of ScienceUniversity of MauritiusReduitMauritius Department of Microbial Drugs Helmholtz Centre for Infection ResearchInhoffenstraße 738124 BraunschweigGermany Honghe Innovation Center for Mountain Futures Kunming Institute of BotanyHonghe CountyYunnan 654400People’s Republic of China World Agroforestry Centre East and Central AsiaKunming 650201YunnanPeople’s Republic of China Institute of Plant Health Zhongkai University of Agriculture and EngineeringGuangzhou 510225China Faculty of Agriculture Natural Resources and EnvironmentNaresuan Uni

This is a continuation of a series focused on providing a stable platform for the taxonomy of phytopathogenic fungi and fungus-like *** paper focuses on one family:Erysiphaceae and 24 phytopathogenic genera:Armillaria,Barrio-psis,Cercospora,Cladosporium,Clinoconidium,Colletotrichum,Cylindrocladiella,Dothidotthia,,Fomitopsis,Ganoderma,Golovinomyces,Heterobasidium,Meliola,Mucor,Neoerysiphe,Nothophoma,Phellinus,Phytophthora,Pseudoseptoria,Pythium,Rhizopus,stemphylium,Thyrostroma and *** genus is provided with a taxonomic background,distribution,hosts,disease symptoms,and updated backbone *** confirmed with pathogenicity studies are denoted when data are *** of the genera are updated from previous entries as many new species have been described.

关键词： Disease Plant pathology Phylogeny Taxonomy symptoms

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Ten decadal advances in fungal biology leading towards human well‑being

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Fungal Diversity 2022年第5期116卷 547-614页

作者： Ausana Mapook·Kevin DHyde Kevin D.Hyde Khadija Hassan Blondelle Matio Kemkuignou Adela Cmokova Frank surup Eric Kuhnert Pathompong Paomephan Tian Cheng sybren de Hoog Yinggai song Ruvishika s.Jayawardena Abdullah M.s.Al‑Hatmi Tokameh Mahmoudi Nadia Ponts Lena studt‑Reinhold Florence Richard‑Forget K.W.Thilini Chethana Dulanjalee L.Harishchandra Peter E.Mortimer Huili Li saisamorm Lumyong Worawoot Aiduang Jaturong Kumla Nakarin suwannarach chitrabhanu s.bhunjun Feng‑Ming Yu Qi Zhao Doug schaefer Marc stadler Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand school of science Mae Fah Luang UniversityChiang Rai 57100Thailand Department Microbial Drugs Helmholtz Centre for Infection Research(HZI)and German Centre for Infection Research(DZIF)Partner Site Hannover‑BraunschweigInhoffenstrasse 738124 BrunswickGermany Institute of Microbiology Technische Universitat BraunschweigSpielmannstrase 738106 BrunswickGermany Laboratory of Fungal Genetics and Metabolism Institute of MicrobiologyCzech Academy of SciencesPragueCzech Republic Centre of Biomolecular Drug Research(BMWZ) Institute for Organic ChemistryLeibniz University HannoverSchneiderberg 3830167 HannoverGermany Department of Biotechnology Faculty of ScienceMahidol University272 Rama VI RoadRatchathewiBangkok 10400Thailand Center of Expertise in Mycology Radboud University Medical Center/Canisius Wilhelmina HospitalNijmegenThe Netherlands Key Laboratory of Environmental Pollution Monitoring and Disease Control Guizhou Medical UniversityGuiyangChina Microbiology Parasitology and Pathology Graduate ProgramFederal University of ParanaCuritibaBrazil Department of Dermatology Peking University First HospitalPeking UniversityBeijingChina Natural and Medical sciences Research Center University of NizwaNizwaOman Department of Biochemistry Erasmus University Medical CenterRotterdamThe Netherlands INRAE UR1264 Mycology and Food Safety(MycSA)33882 Villenave d’OrnonFrance Department of Applied Genetics and Cell Biology Institute of Microbial GeneticsUniversity of Natural Resources and Life SciencesVienna(BOKU)Tulln an der DonauAustria Beijing Key Laboratory of Environment Friendly Management on Fruit Diseases and Pests in North China Institute of Plant ProtectionBeijing Academy of Agriculture and Forestry SciencesBeijing 100097China Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201YunnanChina Centre for Mountai

Fungi are an understudied resource possessing huge potential for developing products that can greatly improve human *** the current paper,we highlight some important discoveries and developments in applied mycology and interdisciplinary Life science *** examples concern recently introduced drugs for the treatment of infections and neurological diseases;application of–OMICs techniques and genetic tools in medical mycology and the regulation of mycotoxin production;as well as some highlights of mushroom cultivaton in *** for new diagnostic tools in medical mycology and the exploitation of new candidates for therapeutic drugs,are also *** addition,two entries illustrating the latest developments in the use of fungi for biodegradation and fungal biomaterial production are *** other areas where there have been and/or will be significant developments are also *** is our hope that this paper will help realise the importance of fungi as a potential industrial resource and see the next two decades bring forward many new fungal and fungus-derived products.

关键词： Biomaterial CRIsPR Drug development Morel cultivation Mushroom cultivation Mycotoxin biosynthesis Plastic degradation

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