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Migration and population genetics of the grain aphid Macrosiphum miscanti (Takahashi) in relation to the geographic distance and gene flow

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Progress in Natural Science:Materials International 2005年第11期15卷 1000-1004页

作者： GUO Wei, SHEN Zuorui, LI Zhihong and GAO Lingwang (College of agronomy and biotechnology, china agricultural university, {3. 100094, china) College of agronomy and biotechnology China Agricultural University Beijing 100094 China

The population genetics of the grain aphid Macrosiphum miscanti (Takahashi) is analyzed by microsatellite markers. Samples collected from 15 locations in china have been examined at 5 polymorphic microsatellite loci. Overall, genetic diversity displays a relation between the migration and gene flow in the grain aphid; a free and frequent gene flow is found in the eastern populations, and gene isolation occurs in the two western populations, especially Datong population and Guiyang population. The natural barriers may present an insurmountable obstacle preventing gene flow and aphid migration. However, a spatial genetic differentiation between populations is correlated with their geographical separation, indicating the geographic differentiation may play an important role in shaping the genetic structure of M. miscanti populations. In addition, most populations of grain aphids are out of Hardy-Weinberg equilibrium and there is het-erozygote deficit. Based on F statistics, the average genetic differentiation among different geographical populations is relatively low. It seems that the long distance migration of the grain aphid may enhance gene flow and decrease genetic differentiation among different populations .

关键词： Macrosiphum miscanti microsatellite gene flow migration.

Aberrant histone H4 acetylation in dead somatic cell-cloned calves

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Progress in Natural Science:Materials International 2008年第7期18卷 813-818页

作者： Lei Zhang a,b,*, Shaohua Wang a, Qiang Li a, Xiangdong Ding c, Yunping Dai a, Ning Li a,* a State Key laboratory for Agrobiotechnology, china agricultural university, {3. 100094, china b {3. Gene & Protein biotechnology Co. LTD, {3. 100094, china c College of Animal Science and Technology, china agricultural university, {3. 100094, china State Key laboratory for Agrobiotechnology China Agricultural University Beijing 100094 China beijing Gene & Protein biotechnology Co. LTD Beijing 100094 China College of Animal Science and Technology China Agricultural University Beijing 100094 China

In somatic cell-cloned animals, inefficient epigenetic reprogramming can result in an inappropriate gene expression and histone H4 acetylation is one of the key epigenetic modifications regulating gene expression. In this study, we investigated the levels of histone H4 acetylation of 11 development-related genes and expression levels of 19 genes in lungs of three normal control calves and nine aber- rant somatic cell-cloned calves. The results showed that nine studied genes had decreased acetylation levels in aberrant clones (p 0.05). Whereas 13.genes had significantly decreased expression (p 0.05), and only one gene had higher expression level in clones (p < 0.05). Furthermore, FGFR, GHR, HGFR and IGF1 genes showed lowered levels of both histone H4 acetylation and expression in aberrant clones than in controls, and the level of histone H4 acetylation was even more lowered in aberrant clones than those in controls. It was suggested that the lower levels of histone H4 acetylation in aberrant clones caused by the previous memory of cell differentiation might not support enough chromatin reprogramming, thus affecting appropriate gene expressions, and growth and development of the cloned calves. To our knowledge, this is the first study on how histone H4 acetylation affects gene expression in organs of somatic cell-cloned calves.

关键词： Somatic cell-cloned calves Histone H4 acetylation Gene expression Lungs

Cloning of a down-regulated gene encoding small GTP binding protein in hybrid wheat

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Progress in Natural Science:Materials International 2005年第7期15卷 621-626页

作者： YAO Yingyin, NI Zhongfu, CHEN Rongmin, WU Limin and SUN Qixin (Department of Plant Genetic & Breeding, State Key laboratory for Agro-biotechnology, china agricultural university, {3. 100094, china) Department of Plant Genetic & Breeding State Key Laboratory for Agro-biotechnology China Agricultural University Beijing 100094 China

Previous studies showed that differential gene expression between wheat hybrids and their parents was responsible for the heterosis. To provide an insight into the molecular basis of wheat heterosis, one cDNA, designated TaRab, was identified from the cDNA library of wheat seedling leaves. The sequence comparison in GenBank revealed that TaRab is homologous to a group of genes encoding Rab-GTP binding protein. Semi-quantitative RT-PCR analysis indicated that TaRab was expressed in all plant tissues examined, but at slightly higher level in leaves. Further analysis exhibited that TaRab displayed lower expression in hybrid than in its patents in both roots and leaves, which was in agreement with the original results of suppression subtractive hybridization. TaRab was located on chromosome 7B and C-7DS5-0.3. by in silico mapping. The relationship between differential expression of TaRab and the molecular basis of wheat heterosis was also discussed.

关键词： wheat Rab protein gene expression heterosis.

Tn5-mutagenesis and identification of atr operon and trpE gene responsible for indole-3.acetic acid synthesis in Azospirillum brasilense Yu62

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Progress in Natural Science:Materials International 2006年第4期16卷 366-372页

作者： XIE Baoen and CHEN Sanfeng State Key laboratory for Agrobiotechnology, College of Biological Sciences, china agricultural university, {3. 100094, china State Key laboratory for Agrobiotechnology College of Biological Sciences China Agricultural University Beijing 100094 China

To bring more information about synthesis of indole-3.acetic acid (IAA) from Azospirillum brasilense, a Tn5-insertion library of A. brasilense Yu62 was constructed and subjected to screening for IAA producing mutants. Two mutants with decreased IAA levels, named as A3.and A24, were isolated. The sequence analysis of loci tagged showed that the Tn5-1063. was located in the atrA gene encoding GntR family transcriptional regulator and trpE gene encoding component I of anthranilate synthase respectively. At the same time. atrB encoding phosphotransferase and atrC encoding aminotransferase were cloned downstream the atrA gene and atrA, atrB and atrC were clustered in an operon. Mutagenesis and complementation studies showed that atrA and atrC were involved in IAA synthesis. IAA levels of trpE mutant and wild-type strain could be improved by adding anthranilate into the medium.

关键词： indole-3.acetic acid (IAA) IAA mutants Azospirillum brasilense atrABC cluster trpE Tn5 transposon.

Cloning and sequencing of nifBHDKENX genes of Paenibacillus massiliensis T7 and its nif promoter analysis

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Science china(Life Sciences) 2006年第2期49卷 115-122页

作者： ZHAO Hongxin1,2,3. XIE Baoen2 & CHEN Sanfeng1,2 1. State Key laboratory for Agrobiotechnology and Biological School, china agricultural university, {3. 100094, china 2. Key laboratory for Agro-Microbial Resource and Application of Agriculture Ministry, china agricultural university, {3. 100094, china 3. Chemical and Biological School, ShenYang Normal university, Shenyang 11003., china 1. State Key laboratory for Agrobiotechnology and Biological School China Agricultural University Beijing 100094 China 2. Key laboratory for Agro-Microbial Resource and Application of Agriculture Ministry China Agricultural University Beijing 100094 China 3. Chemical and Biological School ShenYang Normal University Shenyang 110034 China

A 3.4 bp of nifH fragment was PCR amplified from Paenibacillus massiliensis T7 using the universal degenerate primers. The PCR-amplified nifH fragment was labeled with DIG; then used as a probe in Southern blot analysis. Southern blot result showed that there were two positive signals, indicating that there might be two copies of nifH in P. massiliensis T7. A total of 10254 bp DNA sequence containing purD; nifBHDKENX was obtained by five rounds of inverse-PCR amplification. The predicted proteins of nifBHDKENX had high homology with those from other nitrogen-fixing bacteria. Only one putative σ[54]-dependent promoter sequence was detected upstream of the nifB gene; nifBHDKENX were likely to be organized in one operon. Assays of β-galactosidase activity of P. massiliensis T7PB carrying a nifB-lacZ fusion under different concentrations of NH4 [+]; O2 showed that the expression of nifB-lacZ was strongly inhibited by O2.

关键词： Paenibacillus massiliensis T7, nifBHDKENX, nifB-lacZ, inverse-PCR.

维普期刊数据库

Neuroglobin mutation associated with hypoxia adaptation in Tibet chicken

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Progress in Natural Science:Materials International 2007年第12期17卷 1419-1424页

作者： Zhang Lifan1, Liu Chong2, Lian Linsheng3. Zhao Chunjiang1, Bao Haigang1 and Wu Changxin1(1. College of Animal Science and Technology, china agricultural university, beijing 100094, china 2. College of Biological Science, china agricultural university, beijing 100094, china 3. College of Animal Science and Technology, Yunnan agricultural university, Kunming 650201, china) College of Animal Science and Technology China Agricultural University Beijing 100094 China College of Biological Science China Agricultural University Beijing 100094 China College of Animal Science and Technology Yunnan Agricultural University Kunming 650201 China

Globin protein family plays an important role in storing and transporting oxygen. As a newly reported globin, the revealed function of neuroglobin includes binding and storing oxygen as well as facilitating the utilization of oxygen in neuronal cells. In the present study, mutations in exons of chicken Ngb gene were identified with the method of sequencing and created restriction site PCR in Tibet chicken and other four lowland chicken breeds. The mutations of Lys-2224(E4)-Asn and Ser-2279(E4)-Gly were identified in exon 4 of the gene. The Lys-2224(E4)-Asn mutation existed only in Tibet chicken and the mutation frequencies increased with increasing altitude. Analysis of the haplotype and diplotype of the two mutations in Tibet chicken populations of different altitudes showed that the frequencies of TG haplotype and TTGG diplotype also increased with increasing altitude, while the reverse tendency was found on GGAA diplotype. Under the hypoxic simulation incubation, the main haplotype was TG in living embryos and GA in dead embryos. The results showed that the Lys-2224(E4)-Asn mutation may be a specific mutation associated with hypoxia adaptation in Tibet chicken.

关键词： Tibet chicken neuroglobin hypoxia adaptation Ngb gene mutation.

A five-fold pig bacterial artificial chromosome library:a resource for positional cloning and physical mapping

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Progress in Natural Science:Materials International 2006年第08期16卷 889-892页

作者： LIU Wei, ZHANG Ying, LIU Zhaoliang, GUO Li, WANG Xiaobo, FEI Jing, FENG Jidong, ZHAO Rui, HU Xiaoxiang and LI Ning (The State Key laboratory for Agro-biotechnology, College of Biology, china agricultural university, {3. 100094, china College of Animal Science and Technology, china agricultural university, {3. 100094, china) [a]The State Key laboratory for Agno-biotechnology College of Biology China Agricultural University Beijing China [b]College of Animal Science and Technology China Agricultural University Beijing China

A pig BAC library was constructed with genomic DNA from a male Erhualian pig. After partial digestion with HindⅢor BamHⅠthe fragments obtained were cloned into the pBeloBAC11 vector. The library consists of 1843.0 clones which stored in 480 pieces 3.4-well plates (20 plates per superpool). A two-step 4-dimension PCR screening system was established to screen the positive clones. An average insert size of 128 kb was estimated from 105 randomly isolated clones, which indicates that the library is more than five times of genomic coverage. For the demonstration of the probability to pick out any unique genes or DNA markers from the library, 10 single-copy genes were screened out and the positive clones were yielded between 1 and 8 with an average of 3.6. Positive superpools were obtained for 3. microsatellite markers selected from different regions of pig genome. The number of positive superpools for each marker varies from 1 to 9 with an average of 4.78. This BAC library provides an additional resource for pig physical mapping and gene identifica-

关键词： pig BAC library PCR screening system.

Study on NDVI-T_s space by combining LAI and evapotranspiration

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Science china Earth Sciences 2006年第7期49卷 747-754页

作者： HAN Lijuan1,2,3. WANG Pengxin4, YANG Hua1,2,3. LIU Shaomin1,2,3.& WANG Jindi1,2,3.1. Research Center for Remote Sensing and GIS, School of Geography, beijing Normal university, beijing 100875,{3. 2. State Key laboratory of Remote Sensing Science, beijing 100875,{3. 3. beijing Key laboratory for Remote Sensing of Environment and Digital Cities, beijing 100875,{3. 4. Department of Information Management, College of Information and Electronic Engineering, china agricultural university, beijing 100083.{3. 1. Research Center for Remote Sensing and GIS School of Geography Beijing Normal University Beijing 100875 China 2. State Key laboratory of Remote Sensing Science Beijing 100875 China 3. beijing Key laboratory for Remote Sensing of Environment and Digital Cities Beijing 100875 China 4. Department of Information Management College of Information and Electronic Engineering China Agricultural University Beijing 100083 China

This paper focuses on interpreting the different spatial relationships between NDVI and Ts, a triangular or a trapezoid, and on analyzing transformation conditions, the physical and ecological meanings of the vegetation index-surface temperature space as well. Further, we use the Tempera-ture-Vegetation Dryness Index (TVDI) to explain the existent meaning of a triangular space after NDVI reaches its saturated state by employing the relationships between NDVI, LAI and evapotranspiration. The specific relations between NDVI and Ts are useful for describing, validating and updating land surface models.

关键词： NDVI, land surface temperature, evapotranspiration, leave area index.

维普期刊数据库

Ramet population ecology of Panicum virgatum in the field–Competitively random growth of ramets and foraging behavior of ramet populations

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Progress in Natural Science:Materials International 2008年第7期18卷 901-906页

作者： Xinguo Yang a,*, Tianlong Wu b, Xu Chengb a College of Resources and Environmental Sciences, china agricultural university, beijing 100193. P.R. china b College of Agriculture and {3., china agricultural university, beijing 100193. P.R. china College of Resources and Environmental Sciences China Agricultural University Beijing 100193 P.R. China College of Agriculture and biotechnology China Agricultural University Beijing 100193 P.R. China

The authors investigated the heterogeneous size patterns and dynamic growth of the ramet population of Panicum virgatum, a clonal caespitose plant, limited to the space occupied by a ramet bunch and the time of the ramet yearly life cycle, to understand the ecology of clonal caespitose plants in the field, where the ramet bunch generally consisted of more than one genet. Dynamic life tables for ramet populations were established by the replacement of living ramets at the present time with "dead" ones in past time. These tables revealed stable coexisting patterns of isometric and allometric growing processes of ramets in mass and height respectively, which approximately followed the historic trajectory of a density-independent population. The ecology of clonal caespitose plants is further discussed based on the competitively random growth of ramet individuals, including the scale of foraging behavior. In the field, the ramet population ecol- ogy of switchgrass may be a statistical result of competitively random growth of ramet individuals. The foraging behavior of a ramet population could then be presented as a process in which ramet individuals competed with each other for light and grew randomly, while at the same time a relatively stable dynamic growth pattern was apparent at the level of the ramet population, and the functional leaves were placed properly in time and space.

关键词： Caespitose clone Ramet population Panicum virgatum Life table Phenotypic plasticity Foraging behavior