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Analysis of tandem repeats in the genome of chinese shrimp Fenneropenaeus chinensis

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chinese Science Bulletin 2005年第14期50卷 1462-1469页

作者： KONG Jie1 & GAO Huan2,3.1. Key Laboratory for Sustainable Utilization of Marine Fisheries Re- sources, Ministry of Agriculture, Yellow Sea Fisheris Research Insti- tute, chinese Academy of Fishery Sciences, Qingdao 266071, china 2. institute of Oceanology, chinese Academy of Sciences, Qingdao 266071, china 3. The Graduate School of the chinese Academy of Sciences, beijing 10003., china Key Laboratory for Sustainable Utilization of Marine Fisheries resources Ministry of Agriculture Yellow Sea Fisheris Research Institute Chinese Academy of Fishery Sciences Qingdao China institute of Oceanology Chinese Academy of Sciences Qingdao China The Graduate School of the chinese Academy of Sciences Beijing China

Through random sequencing, we found a total of 884000 base-pairs (bp) of random genomic sequences in the genome of chinese shrimp (Fenneropenaeus chinensis). Using bio-soft Tandem Repeat Finder (TRF) software, 2159 tandem repeats were found, in which there were 1714 mi- crosatellites and 445 minisatellites, accounting for 79.4% and 20.6% of repeat sequences, respectively. The cumulative length of repeat sequences was found to be 116685 bp, ac- counting for 13.2% of the total DNA sequence; the cumula- tive length of microsatellites occupied 9.78% of the total DNA sequence, and that of minisatellites occupied 3.42%. In decreasing order, the 20 most abundant repeat sequence classes were as follows: AT (557), AC (471), AG (274), AAT (92), A (56), AAG (28), ATC (27), ATAG (27), AGG (18), ACT (15), C (11), AAC (11), ACAT (11), CAGA (10), AGAA (9), AGGG (7), CAAA (7), CGCA (6), ATAA (6), AGAGAA (6). Dinucleotide repeats, not only in the aspect of the number, but also in cumulative length, were the preponderant repeat type. There were few classes and low copy numbers of repeat units of the pentanucleotide repeat type, which included only three classes: AGAGA, GAGGC and AAAGA. The classes and copy numbers of heptanucleotide, eleven-nucleotide and thirteen-nucleotide primer-number-composed repeats were distinctly less than that of repeat types beside them.

关键词：虾遗传特性遗传基因 DNA

Representation of microscale ocean wavenumber spectrum correct to the second order

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Science china Earth Sciences 2005年第4期48卷 549-554页

作者： YUAN Yeli2 & HUA Feng1,2,3.1. institute of Oceanology, chinese Academy of Sciences, Qingdao 266071, china 2. Key Laboratory of Marine Science and Numerical Modeling, State Oceanic Administration, Qingdao 266061, china 3. Graduate School of the chinese Academy of Sciences, beijing 10003., china 1. Key Laboratory of Marine Science and Numerical Modeling State Oceanic Administration 266061 Qingdao China 2. institute of Oceanology Chinese Academy of Sciences 266071 Qingdao China 3. Graduate School of the chinese Academy of Sciences 100039 Beijing China

In this paper, the analytical representations of four wave source functions in high-frequency spectrum range are given on the basis of ocean wave theory and dimensional analysis, and the perturbation method is used to solve the governing equations of ocean wave high-frequency spectrum on the basis of the temporally stationary and locally homogeneous scale relations of microscale wave. The microscale ocean wavenumber spectrum correct to the second order has an explicit structure, its first order part represents the equilibrium between dif- ferent source functions, and its second order part represents the contribution of microscale wave propagation.

关键词： temporally stationary and locally homogeneous, source function in high-frequency spectrum range, microscale ocean wavenumber spectrum.

Evaluation of Sustainable Land Management and Diagnosis of Obstacle at County Scale in Sichuan Basin:Taking Lezhi County as Example

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Wuhan University Journal of Natural Sciences 2006年第4期11卷 1046-1051页

作者： CHEN Guangjian 1, 2, 3., LIU Qing 1 1. Chengdu institute of Biology, chinese Academy of Sciences, Chengdu 610041, Sichuan,china 2. Graduate University of chinese Academy of Sciences, beijing 100049, china 3. Academy of Land Reconnaissance and Layout of Sichuan Province , Chengdu 61003., Sichuan, china Chengdu institute of Biology Chinese Academy of Sciences Chengdu Sichuan China Graduate University of chinese Academy of Sciences Beijing China Academy of Land Reconnaissance and Layout of Sichuan Province Chengdu Sichuan China

This paper established sustainable land resources evaluating indicators fit for hilly area in Sichuan Basin, Southwest of china, and evaluated the case of sustainable land management of Lezhi County from 1990 to 2001. The result showed that the land resource sustainable utilization ability in Lezhi County is belong to Second level （better sustainable）. Secondly, this paper diagnosed some years obstacles of sustainable land management of Lezhi County from base period to goal period and compared the obstacles factors in the indicators system. There were 16 indexes orderly become major affect factor to land sustainable utilization of Lezhi county in indicator system, of which there are 8 obstacles indexes exist both in 1990 and 2001. The value of obstacles degree of five indicators exceeded 5 in 1990, but in 2001, only two indicators＇ values were more than 5.

关键词： land resources sustainable land management assessment indicators diagnosis of obstacle

Experimental study of ore gabbro liquid immiscibility

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Science china Earth Sciences 2005年第4期48卷 496-505页

作者： SANG Zunan1,2, XIA Bin1, ZHOU Yongsheng3.& JIN Zhenmin4 1. Guangzhou institute of Geochemistry, chinese Academy of Sciences, Guangzhou 510640, china 2. Wuhan University, Wuhan 43.072, china 3. institute of Geology, china Seismological Bureau, beijing 100029, china 4. Faculty of Earth Sciences, china University of geosciences, Wuhan 43.074, china 1. Guangzhou institute of Geochemistry Chinese Academy of Sciences 510640 Guangzhou China 2. Wuhan University 430072 Wuhan China 3. institute of Geology China Seismological Bureau 100029 Beijing China 4. Faculty of Earth Sciences China University of Geosciences 430074 Wuhan China

In this paper, the authors present the results of a preliminary experimental study on partial melting of fine-grained gabbro, Panzhihua, Sichuan Province, china. Experiments were conducted under (confining) pressure ranging from 450 to 500 MPa and temperature of 900— 1200℃. The results show that the initial melt is distributed along grain boundaries and triple junctions. Liquid immiscibility phenomena are noted in the melt with two compositional different melt phases, i.e. matrix and sphere phases. The matrix phase is relatively rich in Si, Al and K, and is depleted in Mg, Fe, Ca, Na and Ti, whereas the sphere phase shows opposite trends. The calculation of the melt free energy indicates that the liquid immiscibility is governed by the rule of thermodynamics, as the liquid immiscibility would result in the decrease in free energy of the melt system. The field relationships suggest that the liquid immiscibility may have played an important role in the generation of ore magma of Panzhihua V-Ti magnetite ore deposit. This study thus provides experimental constraints on the mechanism of the formation of V-Ti magnetite deposite.

关键词： partial melting, experimental study, gabbro, liquid immiscibility, ore formation mechanism.

Discovery of low grade metamorphic volcanic rock sheets within UHP in Dabie Mts. and its implications

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chinese Science Bulletin 1997年第14期42卷 1199-1203页

作者： DONG Shuwen, WANG Xiaofeng and HUANG Dezhi1. chinese Academy of Geological Sciences (CAGS), beijing 10003., china 2. {3. of Geomechanics of CAGS, beijing 100081 china 3. Anhui {3. of Geological Sciences, Hefei 23.001 chinese Academy of Geological Sciences (CAGS) Beijing 100037 China

THE ultrahigh-pressure metamorphic zone (UHP), outcropping in the central and southernDabie Mts. with an area of about 1000 km^2, may be the largest one in the world. The forma-tion and exhumation mechanism of the UHP rocks become a hot point in the study of continen-tal orogen. The first finding of the Shiqiao structural window, which is composed of low

关键词： ultrahigh-pressure metamorphic zone (UHP) low grade metamorphic rock sheets Dabie Mts.

Forcing mechanism of the Pleistocene east Asian monsoon variations in a phase perspective

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Science china Earth Sciences 2005年第10期48卷 1708-1717页

作者： TIAN Jun1,2, WANG Pinxian1, CHENG Xinrong1, WANG Rujian1 & SUN Xiangjun1,3.1. State Key Laboratory of Marine Geology, Tongji University, Shanghai 200092, china 2. institute of Geology and Geophysics, chinese Academy of Sciences, {3. 100029, china 3. institute of Botany, chinese Academy of Sciences, {3. 100093. china State Key Laboratory of Marine Geology Tongji University Shanghai china institute of Geology and Geophysics chinese Academy of Sciences beijing{3. institute of Botany chinese Academy of Sciences beijing{3.

The deep sea records from the ODP Sites 1143.and 1144 in the northern and southern South china Sea (SCS), including foraminiferal δ 18O and δ 13., Opal% and pollen percentage, reveal that the variations of the east Asian monsoon have been closely correlated with the variations of the Earth’s orbital parameters (eccentricity, obliquity and precession) and the global ice volume on orbital scale. All the monsoonal proxies show strong 100 ka, 41 ka and 23.ka cycles. Although G. ruber δ 13. of Site 1143.is coherent with the ETP (ETP= normalized (eccentricity + obliquity-precession) at eccentricity, obliquity and precession bands, most of the coherent relationship focuses on the precession band, and the other monsoonal proxies are coherent with the ETP only at the precession band, which indicate that precession dominates the Pleistocene tropical climate changes. The phase relationship of the monsoonal proxies with the foraminiferal δ 18O implies that the global ice volume changes have played a significant role in modulating the east Asian monsoon climate, at least dominating the winter monsoon. This forcing mechanism of the east Asian monsoon is apparently different from that of the Indian ocean mon-soon. The variations of the east Asian monsoon at the precession band, at least that of the winter monsoon, have been controlled not only by the sensible heating but also by the latent heating of the surface water in the South china Sea.

关键词： South china Sea, ODP, east Asian monsoon, orbital forcing, global ice volume.

Radiometric cross-calibration of the CBERS-02 CCD camera with the TERRA MODIS

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Science china(Technological Sciences) 2005年第S2期48卷 44-60页

作者： LI Xiaoying1,2,3. GU Xingfa1,3.4, MIN Xiangjun5, YU Tao1,3. FU Qiaoyan5, ZHANG Yong1,2,3.& LI Xiaowen1,3.1. State Key Laboratory of Remote Sensing Science, Jointly Sponsored by the institute of Remote Sensing Applications of chinese Academy of Sciences and beijing Normal University, beijing 100101, china 2. Graduate University of chinese Academy of Sciences, beijing 10003., china 3. The Center for National Spaceborne Demonstration, beijing 100101, china 4. Institut National de la Recherche Agronomique, Climat Sol Environnement, 84914 Avignon, France 5. china Center for resource Satellite Data and Application, beijing 10083., china 1. State Key Laboratory of Remote Sensing Science Jointly Sponsored by the Institute of Remote Sensing Applications of Chinese Academy of Sciences and Beijing Normal University 100101 Beijing China 2. Graduate University of chinese Academy of Sciences 100039 Beijing China 3. The Center for National Spaceborne Demonstration 100101 Beijing China 4. Institut National de la Recherche Agronomique Climat Sol Environnement 84914 Avignon France 5. china Center for resource Satellite Data and Application 100830 Beijing China

For the application of the CCD camera, the most important payload on CBERS-02, the key is to provide long-term stable radiometric calibration coefficients. Although the vicarious calibration had been proved successful, it had its limitations such as test site requirement and unsuitable for historical data. Cross-calibration is one of the alternative methods, but it needs synchro surface spectrum to achieve spectral band matching factors. Our effort is to probe the influences on these factors. Simulations with a lot of surface spectrum showed that the factors changed with the viewing geometry, atmospheric condition and surface targets. However, simulating with the same viewing geometry and atmospheric condition, the spectral band matching factors of the same or similar surface targets’ spectrum acquired from different dates and different places would like to be consistent to each other within 1%―5%. Thus, the synchro measurement data can be substituted by the same or similar target from other source. Based on this method, using the MODIS as the reference, the cross-calibration was performed for CCD camera. The research demonstrated that the traditional method with single calibration site was inappropriate for CCD camera, since the offsets for its four spectral bands were not zeros. With four calibration sites, these offsets were obtained. And the camera was detected to degrade with dates based on four times of cross-calibrations.

关键词： CBERS-02 CCD camera cross-calibration the spectral band matching factors.

Monitoring of rice crop using ENVISAT ASAR data

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Science china Earth Sciences 2006年第7期49卷 755-763页

作者： DONG Yanfang1, 2, SUN Guoqing1,3.& PANG Yong4 1. State Key Laboratory of Remote Sensing Science, institute of Remote Sensing Applications, chinese Academy of Sciences, beijing 100101,{3. 2. Graduate University of chinese Academy of Sciences, beijing 10003.,{3. 3. Department of Geography, University of Maryland, College Park, MD 20742, USA 4. Forest Remote Sensing Lab, Research institute of Forest resource and Information Technology, chinese Academy of For-estry, beijing 100091,{3. 1. State Key Laboratory of Remote Sensing Science Institute of Remote Sensing Applications Chinese Academy of Sciences Beijing 100101 China 2. Graduate University of chinese Academy of Sciences Beijing 100039 China 3. Department of Geography University of Maryland College Park MD 20742 USA 4. Forest Remote Sensing Lab Research Institute of Forest Resource and Information Technology Chinese Academy of Forestry Beijing 100091 China

Because of the cloudy conditions during the rice growth period, rice is one of the agri-cultural crops most suited to monitoring with the SAR instruments. Backscatter response measured by SAR is correlated with rice conditions, including height, density, biomass and structure, which are variable at different growing stages. In this paper, multi-date ENVISAT ASAR Alternating Polarization Mode (APMode) imageries were acquired during the rice crop growing cycle. At the same time, the rice parameters were measured in field. A continuous canopy model was used to compute the back-scattering from rice fields during the growth cycle, and the relationship between rice parameters and radar backscattering coefficients from both ASAR and modeling was analyzed. The effects of polari-zation, incidence angle and polarization on radar backscattering coefficients were analyzed. It was found that simulated radar backscatter has similar trends as ASAR data. This will be meaningful for the further research of rice parameters estimation from ASAR data. Different features show signifi-cantly different signatures in ASAR images and they follow some certain laws, so rice area can be accurately mapped by using multi-temporal SAR images, then rice yield can be estimated.

关键词： rice, ASAR, radar backscattering, model.

Environmental characteristics of Mid-Holocene recorded by lacustrine sediments from Lake Daihai, north environment sensitive zone, china

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Science china Earth Sciences 2006年第9期49卷 968-981页

作者： SUN Qianli1,2, ZHOU Jie1, SHEN Ji3. CHEN Peng1,2, WU Feng1,2 & XIE Xiuping1,2 1. State Key Lab of Loess and Quaternary Geology, institute of Earth Environment, chinese Academy of Sciences, Xi’an 710075, china 2. Graduate University of chinese Academy of Sciences, beijing 10003., china 3. Nanjing institute of Geography and Limnology, chinese Academy of Sciences, Nanjing 210008, china 1. State Key Lab of Loess and Quaternary Geology Institute of Earth Environment Chinese Academy of Sciences Xi’an 710075 China 2. Graduate University of chinese Academy of Sciences Beijing 100039 China 3. Nanjing institute of Geography and Limnology Chinese Academy of Sciences Nanjing 210008 China

Climate proxies, such as total organic carbon and nitrogen (TOC, TN), carbonate content (CaCO3., grain-size and pollen of the sediment core retrieved from enclosed Lake Daihai which lies in the north china environment sensitive zone are analyzed to reconstruct the environment evolution of the area based on high-resolution radiocarbon chronology. The results reveal that the TOC and TN contents of the sediments correlate well with pollen percentage and pollen flux variations during the Holocene, and both reach their peak values simultaneously at 6.7―3.5 ka BP (calendar age, 7.6―3.6 ka BP). Since 6.7 ka BP, both the CaCO3.and organic matter contents of the core have simultaneous variations, and their high values also occur during 6.7―3.5 ka BP. While during 9.0―6.7 ka BP (calendar age, 10―7.6 ka BP) relatively lower level of organic matter content and pollen flux corre- spond to the higher level of carbonate content. The above relations suggest that during 6.7―3.5 ka BP, the productivity and effective precipitation were greatly improved in the lake drainage area, and this would probably strengthen the hydrodynamic conditions, enhancing organic matter, pollen and carbonate inputs from terrestrial sources. Such processes would account for the enrichment of both organic matter and carbonate in the sediments. While during 9.0―6.7 ka BP, the lower level of or- ganic matter, pollen flux but high carbonate content show depressed productivity and declined vege- tation coverage. The higher carbonate content at this stage would have probably resulted from the higher evaporation ratio of the lake water under relatively drier climate conditions. Therefore, it is in- ferred that during 6.7―3.5 ka BP, the climate was more humid with abundant rainfalls and vegetation was more flourishing in the Lake Daihai area. This can be seen as Holocene Climate Optimum (HCO). As a result, this has evident discrepancies with the traditional notion that the HCO occurs at Early Holocene or early Mid

关键词： Lake Daihai, Mid-Holocene, lacustrine sediments, environmental characteristics.